Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Forward (+)

66680452 .. 66686202

Gene Structure 5751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAACAAGCTTGATGCTCAACTGGAGATTTTCATCATACACAACAATACGCTCTCAATCATTGACGGTGGTATTGGCATGACCAAAGCTGGCAGGAAAAAGAACTTGGTGACAAGGTTGGTGCTCTCCTCGTCCACGGCGTTGGGTTTAGAGTCGAGTCAAAGGCGCCCCGACGACTACACTAAAAGGTGTTGGCACGCTCGCGCACTCAAAAGAGATTGTTTGCTATCCAGACTGGTTTTTGAGCCAAGCATTTTGGCACGCGCGGCGCAACGAGAAGAGTTTGTACCTGGACCCATCCCGGAGAATGCAAGCATCGAAGAAAAGTTGACCATCATGCAGGCCAACATTGAGAACTTTTGGGAACATTCGAGCAAGTCATATAAGGAGTCTAAACGAGCTACTCTCGAGAAGTTCCACTGTTTCGATTATCTCGGGAGGGGTCCTATCTTGCTGAACACGGGGTTTATCGATCGTTACTATTGCTATCGGTCTCGCTTATCGCAAAACGGACGAAGGTTAGAGGGAAGACCGGGTGTGCCGACCTTCAACGCTCCGATGCCTAAGTCGGTATCGTATAAGATAATGATAATGGAAAGTGATAGTAAACATTTACCTCTTTGGGTTGTTGGAGATGACCTTAATGCGGCAGCTTTATGGGAGCTTGGTTCCGTTTCTTTCGGTGTGGGATGCTCGGGACTCCGGATATCGCCTAGAGGGGTATCCGGACCCCCGACGGGGGCTTTCCTCACTTGTGTATTGGTGATTCGAGTCTTGTGCTTTCGACACTTGTGCACGGGAGGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.04

Weight (kDa)

9.4

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	165
AccII	CGCG	3 cut(s)	204, 264, 266
AccIII	TCCGGA	2 cut(s)	702, 725
AciI	CCGC	2 cut(s)	266, 647
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	2 cut(s)	288, 805
AfiI	CCNNNNNNNGG	4 cut(s)	646, 737, 738, 739
AgsI	TTSAA	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	5 cut(s)	10, 89, 401, 653, 664
AluI	AGCT	5 cut(s)	10, 89, 401, 653, 664
Alw21I	GWGCWC	2 cut(s)	126, 797
Alw26I	GTCTC	1 cut(s)	498
Alw44I	GTGCAC	1 cut(s)	793
Ama87I	CYCGRG	3 cut(s)	407, 434, 694
Aor13HI	TCCGGA	2 cut(s)	702, 725
AoxI	GGCC	1 cut(s)	342
ApaLI	GTGCAC	1 cut(s)	793
ApeKI	GCWGC	1 cut(s)	650
AspLEI	GCGC	4 cut(s)	168, 206, 266, 271
AspS9I	GGNCC	3 cut(s)	293, 443, 728
AsuC2I	CCSGG	2 cut(s)	302, 534
AsuHPI	GGTGA	2 cut(s)	121, 775
AvaI	CYCGRG	3 cut(s)	407, 434, 694
AvaII	GGWCC	3 cut(s)	293, 443, 728
BaeGI	GKGCMC	1 cut(s)	797
BanI	GGYRCC	1 cut(s)	165
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
BbsI	GAAGAC	1 cut(s)	535
Bbv12I	GWGCWC	2 cut(s)	126, 797
BbvI	GCAGC	1 cut(s)	662
BccI	CCATC	2 cut(s)	305, 341
BceAI	ACGGC	1 cut(s)	153
BcgI	CGANNNNNNTGC	4 cut(s)	759, 774, 793, 808
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	733
BcnI	CCSGG	2 cut(s)	302, 534
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	1 cut(s)	714
BfoI	RGCGCY	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	733
BisI	GCNGC	3 cut(s)	267, 648, 651
BlsI	GCNGC	3 cut(s)	268, 649, 652
Bme1390I	CCNGG	3 cut(s)	291, 302, 534
Bme18I	GGWCC	3 cut(s)	293, 443, 728
BmeT110I	CYCGRG	3 cut(s)	407, 434, 694
BmgT120I	GGNCC	3 cut(s)	293, 443, 728
BmiI	GGNNCC	5 cut(s)	167, 295, 444, 670, 730
BmrFI	CCNGG	3 cut(s)	291, 302, 534
BmsI	GCATC	4 cut(s)	4, 324, 549, 680
BpiI	GAAGAC	1 cut(s)	535
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
BpmI	CTGGAG	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	302, 534
Bsa29I	ATCGAT	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	807
BsaBI	GATNNNNATC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	2 cut(s)	702, 725
Bsc4I	CCNNNNNNNGG	4 cut(s)	646, 737, 738, 739
Bse1I	ACTGG	2 cut(s)	27, 240
Bse8I	GATNNNNATC	1 cut(s)	32
BseAI	TCCGGA	2 cut(s)	702, 725
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	297, 695
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	4 cut(s)	646, 737, 738, 739
BseNI	ACTGG	2 cut(s)	27, 240
BseRI	GAGGAG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	797
BseXI	GCAGC	1 cut(s)	662
Bsh1236I	CGCG	3 cut(s)	204, 264, 266
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	471
BsiEI	CGRYCG	1 cut(s)	475
BsiHKAI	GWGCWC	2 cut(s)	126, 797
BsiHKCI	CYCGRG	3 cut(s)	407, 434, 694
BsiSI	CCGG	4 cut(s)	302, 533, 703, 726
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	4 cut(s)	646, 737, 738, 739
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	711
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	498
BsoBI	CYCGRG	3 cut(s)	407, 434, 694
Bsp1286I	GDGCHC	2 cut(s)	126, 797
Bsp13I	TCCGGA	2 cut(s)	702, 725
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	2 cut(s)	266, 647
BspANI	GGCC	1 cut(s)	344
BspDI	ATCGAT	1 cut(s)	471
BspEI	TCCGGA	2 cut(s)	702, 725
BspFNI	CGCG	3 cut(s)	204, 264, 266
BspLI	GGNNCC	5 cut(s)	167, 295, 444, 670, 730
BspT107I	GGYRCC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	27, 240
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	68, 422
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	807
BstC8I	GCNNGC	6 cut(s)	91, 198, 202, 262, 313, 342
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	297, 695
BstFNI	CGCG	3 cut(s)	204, 264, 266
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	4 cut(s)	168, 206, 266, 271
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	1 cut(s)	472
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	3 cut(s)	289, 300, 532
BstSLI	GKGCMC	1 cut(s)	797
BstUI	CGCG	3 cut(s)	204, 264, 266
BstV1I	GCAGC	1 cut(s)	662
BstV2I	GAAGAC	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	344
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	297, 695
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	6 cut(s)	91, 198, 202, 262, 313, 342
CfoI	GCGC	4 cut(s)	168, 206, 266, 271
Cfr13I	GGNCC	3 cut(s)	293, 443, 728
ClaI	ATCGAT	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	287, 804
CviAII	CATG	2 cut(s)	79, 337
CviJI	RGCY	8 cut(s)	10, 89, 247, 344, 401, 653, 664, 743
CviKI_1	RGCY	8 cut(s)	10, 89, 247, 344, 401, 653, 664, 743
CviQI	GTAC	2 cut(s)	287, 804
DdeI	CTNAG	1 cut(s)	564
DinI	GGCGCC	1 cut(s)	167
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	498
Eco32I	GATATC	1 cut(s)	708
Eco47I	GGWCC	3 cut(s)	293, 443, 728
Eco88I	CYCGRG	3 cut(s)	407, 434, 694
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	708
EgeI	GGCGCC	1 cut(s)	167
EheI	GGCGCC	1 cut(s)	167
FaeI	CATG	2 cut(s)	82, 340
FaiI	YATR	7 cut(s)	38, 80, 338, 382, 384, 579, 658
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	2 cut(s)	78, 336
Fnu4HI	GCNGC	3 cut(s)	267, 648, 651
FokI	GGATG	2 cut(s)	284, 702
Fsp4HI	GCNGC	3 cut(s)	267, 648, 651
FspBI	CTAG	1 cut(s)	714
GlaI	GCGC	4 cut(s)	167, 205, 265, 270
GluI	GCNGC	3 cut(s)	267, 648, 651
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	4 cut(s)	302, 533, 703, 726
HhaI	GCGC	4 cut(s)	168, 206, 266, 271
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	82, 340
Hin6I	GCGC	4 cut(s)	166, 204, 264, 269
HinP1I	GCGC	4 cut(s)	166, 204, 264, 269
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	6 cut(s)	152, 157, 389, 699, 766, 771
HpaII	CCGG	4 cut(s)	302, 533, 703, 726
HphI	GGTGA	2 cut(s)	121, 775
Hpy166II	GTNNAC	4 cut(s)	135, 330, 608, 795
Hpy188I	TCNGA	1 cut(s)	558
Hpy188III	TCNNGA	7 cut(s)	231, 407, 409, 436, 696, 703, 726
Hpy8I	GTNNAC	4 cut(s)	135, 330, 608, 795
Hpy99I	CGWCG	2 cut(s)	176, 739
HpyAV	CCTTC	2 cut(s)	510, 556
HpyCH4III	ACNGT	2 cut(s)	68, 422
HpyCH4IV	ACGT	1 cut(s)	806
HpyCH4V	TGCA	3 cut(s)	311, 340, 795
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	1 cut(s)	806
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	82, 340
HspAI	GCGC	4 cut(s)	166, 204, 264, 269
KasI	GGCGCC	1 cut(s)	165
Kpn2I	TCCGGA	2 cut(s)	702, 725
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	2 cut(s)	559, 661
Lsp1109I	GCAGC	1 cut(s)	662
LweI	GCATC	4 cut(s)	4, 324, 549, 680
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	1 cut(s)	806
MaeIII	GTNAC	2 cut(s)	109, 476
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	3 cut(s)	290, 332, 540
MhlI	GDGCHC	2 cut(s)	126, 797
Mly113I	GGCGCC	1 cut(s)	166
MlyI	GAGTC	5 cut(s)	161, 166, 398, 693, 780
MmeI	TCCRAC	1 cut(s)	610
MnlI	CCTC	7 cut(s)	139, 432, 517, 627, 710, 758, 794
MroI	TCCGGA	2 cut(s)	702, 725
MseI	TTAA	1 cut(s)	642
MspI	CCGG	4 cut(s)	302, 533, 703, 726
MspR9I	CCNGG	3 cut(s)	291, 302, 534
MteI	GCGCNGCGC	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	3 cut(s)	204, 264, 266
MwoI	GCNNNNNNNGC	1 cut(s)	266
NarI	GGCGCC	1 cut(s)	166
NciI	CCSGG	2 cut(s)	302, 534
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	82, 340
NlaIV	GGNNCC	5 cut(s)	167, 295, 444, 670, 730
NmuCI	GTSAC	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 803
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	766
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	268, 649, 652
Ple19I	CGATCG	1 cut(s)	475
PleI	GAGTC	5 cut(s)	160, 165, 397, 693, 779
PluTI	GGCGCC	1 cut(s)	169
PpsI	GAGTC	5 cut(s)	160, 165, 397, 693, 779
Ppu21I	YACGTR	1 cut(s)	807
PpuMI	RGGWCCY	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	5 cut(s)	167, 295, 444, 670, 730
PspPI	GGNCC	3 cut(s)	293, 443, 728
PspPPI	RGGWCCY	1 cut(s)	443
PvuI	CGATCG	1 cut(s)	475
RsaI	GTAC	2 cut(s)	288, 805
RsaNI	GTAC	2 cut(s)	287, 804
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	3 cut(s)	267, 648, 651
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	3 cut(s)	293, 443, 728
SchI	GAGTC	5 cut(s)	161, 166, 398, 693, 780
ScrFI	CCNGG	3 cut(s)	291, 302, 534
SduI	GDGCHC	2 cut(s)	126, 797
SfaNI	GCATC	4 cut(s)	4, 324, 549, 680
SfoI	GGCGCC	1 cut(s)	167
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	3 cut(s)	293, 443, 728
SlaI	CTCGAG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SsiI	CCGC	2 cut(s)	266, 647
SspDI	GGCGCC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	289, 300, 532
TaaI	ACNGT	2 cut(s)	68, 422
TaiI	ACGT	1 cut(s)	809
TaqI	TCGA	8 cut(s)	155, 318, 371, 408, 426, 471, 769, 784
TaqII	GACCGA	1 cut(s)	480
TauI	GCSGC	2 cut(s)	269, 650
TfiI	GAWTC	1 cut(s)	766
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	1 cut(s)	425
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	17, 22
TspGWI	ACGGA	2 cut(s)	525, 661
TspRI	CASTG	1 cut(s)	425
VneI	GTGCAC	1 cut(s)	793
VpaK11BI	GGWCC	3 cut(s)	293, 443, 728
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.