Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

10727797 .. 10731959

Gene Structure 4163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGATGATGGGTTATTTGGGTCGTCATTTCCACCATTTGATTTGTTTCTCCTCCATCTCACAGTGTGTTTCAGAGAAAGAAGAACAACGACCAGAGCAATGGGCTGTTGGAGATGACATTAATATAGCAAATTTGTGGGAGCTTCGTCCCATTTCTTTCCTTGTGGGACGCTCGGGATCCCGATATCGCCCCGAGGGGTATCGGAACCCTTGGCCGGGAGCTTATCTCGCCGGTGTATTGGCGATACGAGTCTTGTGCTTCCGATACTTGTGCCTAGAAGGTATGTGCATACCAACAAGTCTCCTAAGTCCCCGGTCAAGAGTTCTCTTGGGTGGGGAGTTTGTCATTGGTAAAAGTATCGGAAGCTCAAGGCAAGTTTATGCCACGTGGCTTCCGTACAGCCACTACCCCCGCCCCCAAGTCCCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.36

Weight (kDa)

9.12

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	2 cut(s)	174, 187
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	133
AcvI	CACGTG	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	217, 218
AluBI	AGCT	3 cut(s)	145, 224, 369
AluI	AGCT	3 cut(s)	145, 224, 369
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	174, 187
Ama87I	CYCGRG	2 cut(s)	175, 194
AoxI	GGCC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	123
AsuC2I	CCSGG	2 cut(s)	219, 316
AvaI	CYCGRG	2 cut(s)	175, 194
BamHI	GGATCC	1 cut(s)	179
BbrPI	CACGTG	1 cut(s)	390
BccI	CCATC	2 cut(s)	4, 65
BcgI	CGANNNNNNTGC	4 cut(s)	240, 255, 274, 289
BcnI	CCSGG	2 cut(s)	219, 316
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	219, 316
BmeT110I	CYCGRG	2 cut(s)	175, 194
BmiI	GGNNCC	2 cut(s)	181, 209
BmrFI	CCNGG	2 cut(s)	219, 316
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	2 cut(s)	219, 316
BsaAI	YACGTR	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	195, 212, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 218
Bse118I	RCCGGY	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	195, 212, 314
BseLI	CCNNNNNNNGG	2 cut(s)	217, 218
BseMI	GCAATG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	217
BsiHKCI	CYCGRG	2 cut(s)	175, 194
BsiSI	CCGG	3 cut(s)	218, 234, 316
BslFI	GGGAC	4 cut(s)	135, 183, 297, 410
BslI	CCNNNNNNNGG	2 cut(s)	217, 218
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	4 cut(s)	135, 183, 297, 410
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	2 cut(s)	175, 194
Bsp143I	GATC	1 cut(s)	179
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	181, 209
BspPI	GGATC	2 cut(s)	174, 187
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	195, 212, 314
BssMI	GATC	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	308
BstKTI	GATC	1 cut(s)	182
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	217, 314
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	233
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	400
CviJI	RGCY	7 cut(s)	107, 145, 217, 224, 369, 394, 405
CviKI_1	RGCY	7 cut(s)	107, 145, 217, 224, 369, 394, 405
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
DraIII	CACNNNGTG	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	212
Eco32I	GATATC	1 cut(s)	188
Eco72I	CACGTG	1 cut(s)	390
Eco88I	CYCGRG	2 cut(s)	175, 194
EcoRV	GATATC	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaiI	YATR	4 cut(s)	128, 287, 293, 384
FaqI	GGGAC	4 cut(s)	135, 183, 297, 410
FauI	CCCGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	3 cut(s)	218, 234, 316
HgaI	GACGC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	3 cut(s)	218, 234, 316
Hpy188I	TCNGA	4 cut(s)	76, 207, 266, 365
Hpy188III	TCNNGA	3 cut(s)	177, 183, 321
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	142, 221
LpnPI	CCDG	4 cut(s)	108, 231, 247, 329
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	389
MalI	GATC	1 cut(s)	181
MboI	GATC	1 cut(s)	179
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	2 cut(s)	64, 190
MseI	TTAA	2 cut(s)	123, 433
MspI	CCGG	3 cut(s)	218, 234, 316
MspR9I	CCNGG	2 cut(s)	219, 316
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	2 cut(s)	219, 316
NdeII	GATC	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	181, 209
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PleI	GAGTC	1 cut(s)	260
PmaCI	CACGTG	1 cut(s)	390
PmlI	CACGTG	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	390
PshBI	ATTAAT	1 cut(s)	123
PspCI	CACGTG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	181, 209
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	123, 433
Sau3AI	GATC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	219, 316
SetI	ASST	5 cut(s)	147, 226, 286, 371, 392
SgrAI	CRCCGGYG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	1 cut(s)	415
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	217, 314
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	1 cut(s)	392
TasI	AATT	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	123, 433
Tru9I	TTAA	2 cut(s)	123, 433
TscAI	CASTG	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	71
VspI	ATTAAT	1 cut(s)	123
XapI	RAATTY	1 cut(s)	133
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.