Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

60273063 .. 60275728

Gene Structure 2666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0481400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCGTCCAGTTTTGATCGGTGGGAGAAGGATCCATATTTCTCGGCGGCCGAGCAAGTTCAAGAATCTGCCGACAGGATGGAATCTACATATAGAACATGGATTCACGCCAAGAAAGACACTTCCAGTATGTGGAATCCGGACGAACTCTGCAGGGATCTCCGCACTACTCTTGGAACTACCAAATGGCAGTTAGATGAGTTTGCACGAGCAGTCAGGGCAAGTTATGCCAGAGGCCCAAGTGAAGACGCAAGAGACAGGCACCGCGAATTCATTGTTGCTATGGAGGACCAGATTTCTAAAGTTGAAAATGCATTACGGGAATCTGCCTTTTCTGAGGGCAAGACTTCTCTGCCTTGGGTGCGTTTGGACGAAGGAGAGTGTAACGAACTAGCTTCTTTTCTTTCTGGACTGACTGCTTCTCAAGAGAAAGTTCTTGCTAAGAGTAAGGATATTGAAAACCTACGAGTGACGGATAGAGAATCAGCACCAGATTGTTCAAAGAACTCATGCGGTTCAGGGGGTTCCCGGGAGGCTAGGGAGGAGAAGTTACATGGGCATAGGAGGACAGCTAGTGCTAGTGCTGATATTGGTTCCTGGAAGATTGCGGTCTATGATGATGGTCACTTACCATCTTCGTCTTCTATGATGATTGAACAACCTGTGCGAAAGATACCCAGTTTCTCTGGGTTTATTAGTTCCATGGAATCTGCATCGAAGTTGAAGTGGTCAAAGAATGGTTTTAGGAAGTGGAAGGCAGTGGACCGTCATGAAGACACTGATGCTGCATTGTTACCATCTACTCAGTTGACTAAGGGCATTGATGCTTGCTATGAAAGAAGCAAGAGCTGTTTGGATAGTGATTGCTATGATAAACAATTATATGGCTGGTATGGAGCTATACAGAGACAACTTCAACGATCTCAGTACTATGTGCAGTATAGTTGGCCTGCTCATGTAGCTTTTTGGATTGTTCTTCTCCTTTGCTTGATTTTTTTGATTGCATTCCGTGCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

339

Amino Acids

38.58

Weight (kDa)

6.42

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STX6_10_61_N	PF09177	11 - 103	1.2e-20	Syntaxin 6/10/61, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	132
AccII	CGCG	1 cut(s)	267
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	5 cut(s)	47, 163, 265, 513, 608
AclWI	GGATC	3 cut(s)	26, 39, 165
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	929
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	7 cut(s)	62, 308, 458, 501, 656, 724, 917
AjnI	CCWGG	1 cut(s)	596
AluBI	AGCT	5 cut(s)	395, 572, 849, 899, 962
AluI	AGCT	5 cut(s)	395, 572, 849, 899, 962
Alw26I	GTCTC	2 cut(s)	249, 901
AlwI	GGATC	3 cut(s)	26, 39, 165
Ama87I	CYCGRG	1 cut(s)	528
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	3 cut(s)	48, 235, 947
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	236, 289, 763
AsuC2I	CCSGG	2 cut(s)	529, 530
AvaI	CYCGRG	1 cut(s)	528
AvaII	GGWCC	2 cut(s)	289, 763
BamHI	GGATCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	3 cut(s)	252, 633, 780
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	4 cut(s)	73, 614, 640, 805
BciT130I	CCWGG	1 cut(s)	598
BcnI	CCSGG	2 cut(s)	529, 530
BcoDI	GTCTC	2 cut(s)	249, 901
BfaI	CTAG	4 cut(s)	392, 537, 573, 579
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	2 cut(s)	48, 786
BlsI	GCNGC	2 cut(s)	49, 787
BmcAI	AGTACT	1 cut(s)	929
Bme1390I	CCNGG	3 cut(s)	529, 530, 598
Bme18I	GGWCC	2 cut(s)	289, 763
BmeT110I	CYCGRG	1 cut(s)	528
BmgT120I	GGNCC	3 cut(s)	236, 289, 763
BmiI	GGNNCC	4 cut(s)	33, 263, 526, 595
BmrFI	CCNGG	3 cut(s)	529, 530, 598
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	3 cut(s)	722, 772, 814
BmuI	ACTGGG	1 cut(s)	672
BpiI	GAAGAC	3 cut(s)	252, 633, 780
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	2 cut(s)	529, 530
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	356, 528, 702
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	3 cut(s)	9, 126, 678
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	3 cut(s)	356, 528, 702
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	3 cut(s)	327, 818, 938
BseNI	ACTGG	3 cut(s)	9, 126, 678
BseRI	GAGGAG	1 cut(s)	557
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	772
BsgI	GTGCAG	1 cut(s)	956
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	50, 237, 949
BshNI	GGYRCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	140, 529
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	249, 901
BsmI	GAATGC	1 cut(s)	1004
BsnI	GGCC	3 cut(s)	50, 237, 949
BsoBI	CYCGRG	1 cut(s)	528
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	16, 31, 157, 920
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	5 cut(s)	47, 163, 265, 513, 608
BspANI	GGCC	3 cut(s)	50, 237, 949
BspCNI	CTCAG	3 cut(s)	328, 817, 937
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	4 cut(s)	33, 263, 526, 595
BspMAI	CTGCAG	1 cut(s)	155
BspPI	GGATC	3 cut(s)	26, 39, 165
BspT107I	GGYRCC	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	9, 126, 678
BssECI	CCNNGG	3 cut(s)	356, 528, 702
BssMI	GATC	4 cut(s)	16, 31, 157, 920
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	356, 702
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	1 cut(s)	767
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	227, 1010
BstC8I	GCNNGC	2 cut(s)	829, 951
BstDEI	CTNAG	5 cut(s)	336, 441, 804, 813, 924
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	4 cut(s)	19, 34, 160, 923
BstMAI	GTCTC	2 cut(s)	249, 901
BstMBI	GATC	4 cut(s)	16, 31, 157, 920
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 227, 361, 959, 1010
BstNI	CCWGG	1 cut(s)	598
BstSCI	CCNGG	3 cut(s)	527, 528, 596
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	3 cut(s)	252, 633, 780
BstX2I	RGATCY	2 cut(s)	31, 157
BstYI	RGATCY	2 cut(s)	31, 157
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	50, 237, 949
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	2 cut(s)	765, 777
Cac8I	GCNNGC	2 cut(s)	829, 951
CciI	TCATGA	1 cut(s)	769
Cfr13I	GGNCC	3 cut(s)	236, 289, 763
Cfr9I	CCCGGG	1 cut(s)	528
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	928
CviAII	CATG	6 cut(s)	99, 510, 554, 703, 770, 956
CviQI	GTAC	1 cut(s)	928
DdeI	CTNAG	5 cut(s)	336, 441, 804, 813, 924
DpnI	GATC	4 cut(s)	18, 33, 159, 922
DpnII	GATC	4 cut(s)	16, 31, 157, 920
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	356, 702
Eco47I	GGWCC	2 cut(s)	289, 763
Eco52I	CGGCCG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	596
EcoT14I	CCWWGG	2 cut(s)	356, 702
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	356, 702
FaeI	CATG	6 cut(s)	102, 513, 557, 706, 773, 959
FatI	CATG	6 cut(s)	98, 509, 553, 702, 769, 955
Fnu4HI	GCNGC	2 cut(s)	48, 786
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	48, 786
FspBI	CTAG	4 cut(s)	392, 537, 573, 579
GluI	GCNGC	2 cut(s)	48, 786
HaeIII	GGCC	3 cut(s)	50, 237, 949
HapII	CCGG	2 cut(s)	140, 529
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	102, 513, 557, 706, 773, 959
HincII	GTYRAC	1 cut(s)	810
HindII	GTYRAC	1 cut(s)	810
HinfI	GANTC	7 cut(s)	65, 83, 103, 136, 323, 482, 707
HpaII	CCGG	2 cut(s)	140, 529
Hpy166II	GTNNAC	2 cut(s)	763, 810
Hpy188I	TCNGA	2 cut(s)	337, 1019
Hpy188III	TCNNGA	5 cut(s)	62, 140, 408, 425, 770
Hpy8I	GTNNAC	2 cut(s)	763, 810
HpyAV	CCTTC	3 cut(s)	22, 368, 748
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4V	TGCA	8 cut(s)	153, 206, 314, 713, 788, 937, 1004, 1013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 227, 361, 959, 1010
HpyF3I	CTNAG	5 cut(s)	336, 441, 804, 813, 924
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	102, 513, 557, 706, 773, 959
Kpn2I	TCCGGA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	16, 31, 157, 920
LmnI	GCTCC	1 cut(s)	896
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	3 cut(s)	722, 772, 814
MaeI	CTAG	4 cut(s)	392, 537, 573, 579
MaeIII	GTNAC	5 cut(s)	383, 469, 549, 623, 792
MalI	GATC	4 cut(s)	18, 33, 159, 922
MboI	GATC	4 cut(s)	16, 31, 157, 920
MboII	GAAGA	6 cut(s)	257, 613, 627, 633, 785, 968
MflI	RGATCY	2 cut(s)	31, 157
MluCI	AATT	2 cut(s)	269, 878
MnlI	CCTC	6 cut(s)	227, 280, 331, 526, 535, 558
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	139
MspI	CCGG	2 cut(s)	140, 529
MspR9I	CCNGG	3 cut(s)	529, 530, 598
Mva1269I	GAATGC	1 cut(s)	1004
MvaI	CCWGG	1 cut(s)	598
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	5 cut(s)	218, 227, 361, 959, 1010
NciI	CCSGG	2 cut(s)	529, 530
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	4 cut(s)	16, 31, 157, 920
NlaIII	CATG	6 cut(s)	102, 513, 557, 706, 773, 959
NlaIV	GGNNCC	4 cut(s)	33, 263, 526, 595
NmeAIII	GCCGAG	2 cut(s)	23, 76
NmuCI	GTSAC	2 cut(s)	469, 623
NsiI	ATGCAT	1 cut(s)	316
PagI	TCATGA	1 cut(s)	769
PctI	GAATGC	1 cut(s)	1004
PfeI	GAWTC	7 cut(s)	65, 83, 103, 136, 323, 482, 707
PflMI	CCANNNNNTGG	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	49, 787
Psp6I	CCWGG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	4 cut(s)	33, 263, 526, 595
PspPI	GGNCC	3 cut(s)	236, 289, 763
PstI	CTGCAG	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	31, 157
RsaI	GTAC	1 cut(s)	929
RsaNI	GTAC	1 cut(s)	928
SatI	GCNGC	2 cut(s)	48, 786
Sau3AI	GATC	4 cut(s)	16, 31, 157, 920
Sau96I	GGNCC	3 cut(s)	236, 289, 763
ScaI	AGTACT	1 cut(s)	929
ScrFI	CCNGG	3 cut(s)	529, 530, 598
SetI	ASST	7 cut(s)	397, 465, 574, 664, 851, 901, 964
SfaNI	GCATC	3 cut(s)	722, 772, 814
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	289, 763
SmaI	CCCGGG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	2 cut(s)	269, 878
SsiI	CCGC	5 cut(s)	47, 163, 265, 513, 608
SspMI	CTAG	4 cut(s)	392, 537, 573, 579
StyD4I	CCNGG	3 cut(s)	527, 528, 596
StyI	CCWWGG	2 cut(s)	356, 702
TaaI	ACNGT	1 cut(s)	767
TaqI	TCGA	1 cut(s)	716
TasI	AATT	2 cut(s)	269, 878
TatI	WGTACW	1 cut(s)	927
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	7 cut(s)	65, 83, 103, 136, 323, 482, 707
TscAI	CASTG	2 cut(s)	765, 784
TseFI	GTSAC	2 cut(s)	469, 623
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	2 cut(s)	469, 623
TspDTI	ATGAA	3 cut(s)	262, 786, 849
TspGWI	ACGGA	2 cut(s)	488, 998
TspMI	CCCGGG	1 cut(s)	528
TspRI	CASTG	2 cut(s)	765, 784
Van91I	CCANNNNNTGG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	289, 763
XapI	RAATTY	1 cut(s)	269
XmaI	CCCGGG	1 cut(s)	528
XspI	CTAG	4 cut(s)	392, 537, 573, 579
ZrmI	AGTACT	1 cut(s)	929
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.