Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

32369510 .. 32385431

Gene Structure 15922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00025750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCCGACATCTCTAAGCGTTACAAAGGACATGTGCCGTCGCTCGACTCTATACCACTATGCCATTATTACATGTTACGTACTCTAGTTCACCGTACTTTCGCACACGACAAACGAATGACAACGGCGCACGTGTCACCGGGGCATAACGTATGCGCCAAAAGACGCATGAAACCTCAACATAAATTAGCGATAGCGACAAAACACCAATTGAGAGTACGAACTCTTCACCCAAGCCAAGACTCCTCTAGAGGGGGACTTGGGCGGAGACTTGCTTATAAGCGGGAAAGGAGAAGTCCCGCTAGCGGTGTTGCCCTTAGCGGAGATTCGCTTACAAGGAGAAAAGTGAGCAGTTCCGCTAGTGGTGTTGCGCTCGGTACAAGGAGAAAAGTGAGCTTGCATGCGCAAGGAGAAAAGGAGGGAGAAGTTCCGCTAGCGGTGTTGAGCTTAGCGGGGGCTCGCTTGCAAGGAGAAAAGGGAGCAGTTCCGCTAGCGGTGTTGTGCTCGGCGGAGACTTCGTCCATTGGTAGTCTTCCTCTTCCATGGTTTCTTCGGCTAACACGAGCCCTTGCTATCTCGGGAGGGTACGATCTAGCTAAATCACGGGATGATCGACTGCCACTATCGCTATCGATTTCTTTTATCTTCCAAACGGACGAAGGTCGAGAAGACCGGGTGTGCCGGCCTTCAACTCTTCGATGCCTAAGTCGGTATCGATACAAGATAATGATAATGGAAAGAGATAGTAAACAGTTACCTCTCTTGGTTGTTGGAGATGCCCTTATTGTAGCAGATTTTGGGAGTCCGGCTCCTTTTCTTTTGGTGTGGGATGTTCGGGATCCCGATATCACCCCGTGGAGTATCGGGATCGCCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.2

Weight (kDa)

10.3

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
Acc16I	TGCGCA	1 cut(s)	405
AclWI	GGATC	3 cut(s)	833, 846, 875
AcvI	CACGTG	1 cut(s)	133
AdeI	CACNNNGTG	1 cut(s)	855
AfaI	GTAC	5 cut(s)	82, 97, 219, 379, 587
AfiI	CCNNNNNNNGG	2 cut(s)	252, 305
AflIII	ACRYGT	3 cut(s)	31, 72, 132
AgsI	TTSAA	1 cut(s)	690
AluBI	AGCT	3 cut(s)	396, 447, 596
AluI	AGCT	3 cut(s)	396, 447, 596
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	2 cut(s)	262, 506
AlwI	GGATC	3 cut(s)	833, 846, 875
Ama87I	CYCGRG	1 cut(s)	577
AoxI	GGCC	1 cut(s)	683
AspLEI	GCGC	4 cut(s)	130, 158, 373, 406
AsuC2I	CCSGG	2 cut(s)	141, 674
AsuHPI	GGTGA	4 cut(s)	83, 129, 221, 841
AsuNHI	GCTAGC	3 cut(s)	302, 433, 490
AvaI	CYCGRG	1 cut(s)	577
BamHI	GGATCC	1 cut(s)	838
BanII	GRGCYC	2 cut(s)	460, 568
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
BauI	CACGAG	1 cut(s)	561
BbrPI	CACGTG	1 cut(s)	133
BbsI	GAAGAC	2 cut(s)	524, 675
Bbv12I	GWGCWC	1 cut(s)	506
BceAI	ACGGC	2 cut(s)	22, 141
BcnI	CCSGG	2 cut(s)	141, 674
BcoDI	GTCTC	2 cut(s)	262, 506
BfaI	CTAG	8 cut(s)	86, 249, 303, 360, 434, 491, 593, 877
BlpI	GCTNAGC	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	141, 674
BmeT110I	CYCGRG	1 cut(s)	577
BmiI	GGNNCC	2 cut(s)	810, 840
BmrFI	CCNGG	2 cut(s)	141, 674
BmsI	GCATC	2 cut(s)	689, 766
BmtI	GCTAGC	3 cut(s)	306, 437, 494
BoxI	GACNNNNGTC	1 cut(s)	660
BpiI	GAAGAC	2 cut(s)	524, 675
BplI	GAGNNNNNCTC	2 cut(s)	793, 825
Bpu10I	CCTNAGC	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	448
BpuMI	CCSGG	2 cut(s)	141, 674
Bsa29I	ATCGAT	2 cut(s)	632, 715
BsaAI	YACGTR	2 cut(s)	80, 133
BsaJI	CCNNGG	3 cut(s)	140, 542, 854
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 305
Bse118I	RCCGGY	2 cut(s)	681, 872
BseCI	ATCGAT	2 cut(s)	632, 715
BseDI	CCNNGG	3 cut(s)	140, 542, 854
BseGI	GGATG	2 cut(s)	613, 835
BseLI	CCNNNNNNNGG	2 cut(s)	252, 305
BseRI	GAGGAG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	685
BshVI	ATCGAT	2 cut(s)	632, 715
BsiHKAI	GWGCWC	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	577
BsiSI	CCGG	5 cut(s)	140, 673, 682, 806, 873
BslFI	GGGAC	2 cut(s)	270, 282
BslI	CCNNNNNNNGG	2 cut(s)	252, 305
BsmAI	GTCTC	2 cut(s)	262, 506
BsmFI	GGGAC	2 cut(s)	270, 282
BsnI	GGCC	1 cut(s)	685
BsoBI	CYCGRG	1 cut(s)	577
Bsp1286I	GDGCHC	3 cut(s)	460, 506, 568
Bsp143I	GATC	4 cut(s)	589, 610, 838, 867
Bsp1720I	GCTNAGC	1 cut(s)	448
Bsp19I	CCATGG	1 cut(s)	542
BspANI	GGCC	1 cut(s)	685
BspDI	ATCGAT	2 cut(s)	632, 715
BspLI	GGNNCC	2 cut(s)	810, 840
BspOI	GCTAGC	3 cut(s)	306, 437, 494
BspPI	GGATC	3 cut(s)	833, 846, 875
BsrFI	RCCGGY	2 cut(s)	681, 872
BssAI	RCCGGY	2 cut(s)	681, 872
BssECI	CCNNGG	3 cut(s)	140, 542, 854
BssMI	GATC	4 cut(s)	589, 610, 838, 867
BssSI	CACGAG	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	542
Bst2BI	CACGAG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	95, 753
Bst6I	CTCTTC	3 cut(s)	231, 543, 699
BstBAI	YACGTR	2 cut(s)	80, 133
BstC8I	GCNNGC	9 cut(s)	304, 398, 402, 435, 460, 464, 492, 683, 874
BstDEI	CTNAG	4 cut(s)	15, 317, 448, 704
BstDSI	CCRYGG	2 cut(s)	542, 854
BstF5I	GGATG	2 cut(s)	613, 835
BstHHI	GCGC	4 cut(s)	130, 158, 373, 406
BstKTI	GATC	4 cut(s)	592, 613, 841, 870
BstMAI	GTCTC	2 cut(s)	262, 506
BstMBI	GATC	4 cut(s)	589, 610, 838, 867
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNSI	RCATGY	3 cut(s)	35, 76, 404
BstPAI	GACNNNNGTC	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	139, 672
BstSNI	TACGTA	1 cut(s)	80
BstV2I	GAAGAC	2 cut(s)	524, 675
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
Bsu15I	ATCGAT	2 cut(s)	632, 715
BsuRI	GGCC	1 cut(s)	685
BsuTUI	ATCGAT	2 cut(s)	632, 715
BtgI	CCRYGG	2 cut(s)	542, 854
BtsCI	GGATG	2 cut(s)	613, 835
Cac8I	GCNNGC	9 cut(s)	304, 398, 402, 435, 460, 464, 492, 683, 874
CfoI	GCGC	4 cut(s)	130, 158, 373, 406
Cfr10I	RCCGGY	2 cut(s)	681, 872
ClaI	ATCGAT	2 cut(s)	632, 715
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	5 cut(s)	81, 96, 218, 378, 586
CviAII	CATG	5 cut(s)	32, 73, 169, 401, 543
CviQI	GTAC	5 cut(s)	81, 96, 218, 378, 586
DdeI	CTNAG	4 cut(s)	15, 317, 448, 704
DpnI	GATC	4 cut(s)	591, 612, 840, 869
DpnII	GATC	4 cut(s)	589, 610, 838, 867
DraIII	CACNNNGTG	1 cut(s)	855
Eam1104I	CTCTTC	3 cut(s)	231, 543, 699
EarI	CTCTTC	3 cut(s)	231, 543, 699
EciI	GGCGGA	2 cut(s)	280, 524
Eco105I	TACGTA	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	542
Eco24I	GRGCYC	2 cut(s)	460, 568
Eco32I	GATATC	1 cut(s)	847
Eco72I	CACGTG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	577
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	542
EcoT38I	GRGCYC	2 cut(s)	460, 568
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	5 cut(s)	35, 76, 172, 404, 546
FaqI	GGGAC	2 cut(s)	270, 282
FatI	CATG	5 cut(s)	31, 72, 168, 400, 542
FauI	CCCGC	3 cut(s)	276, 307, 445
FokI	GGATG	2 cut(s)	620, 842
FriOI	GRGCYC	2 cut(s)	460, 568
FspBI	CTAG	8 cut(s)	86, 249, 303, 360, 434, 491, 593, 877
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	4 cut(s)	129, 157, 372, 405
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	5 cut(s)	140, 673, 682, 806, 873
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	4 cut(s)	130, 158, 373, 406
Hin1II	CATG	5 cut(s)	35, 76, 172, 404, 546
Hin6I	GCGC	4 cut(s)	128, 156, 371, 404
HinP1I	GCGC	4 cut(s)	128, 156, 371, 404
HinfI	GANTC	4 cut(s)	47, 242, 326, 802
HpaII	CCGG	5 cut(s)	140, 673, 682, 806, 873
HphI	GGTGA	4 cut(s)	83, 129, 221, 841
Hpy166II	GTNNAC	2 cut(s)	91, 749
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	6 cut(s)	249, 579, 665, 836, 842, 865
Hpy8I	GTNNAC	2 cut(s)	91, 749
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	653, 696
HpyCH4III	ACNGT	2 cut(s)	95, 753
HpyCH4IV	ACGT	3 cut(s)	79, 132, 150
HpyCH4V	TGCA	2 cut(s)	400, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	4 cut(s)	15, 317, 448, 704
HpySE526I	ACGT	3 cut(s)	79, 132, 150
Hsp92II	CATG	5 cut(s)	35, 76, 172, 404, 546
HspAI	GCGC	4 cut(s)	128, 156, 371, 404
KroI	GCCGGC	2 cut(s)	681, 872
KroNI	GCCGGC	2 cut(s)	683, 874
Kzo9I	GATC	4 cut(s)	589, 610, 838, 867
LmnI	GCTCC	2 cut(s)	479, 814
LpnPI	CCDG	4 cut(s)	153, 686, 695, 819
LweI	GCATC	2 cut(s)	689, 766
MaeI	CTAG	8 cut(s)	86, 249, 303, 360, 434, 491, 593, 877
MaeII	ACGT	3 cut(s)	79, 132, 150
MaeIII	GTNAC	4 cut(s)	20, 75, 135, 753
MalI	GATC	4 cut(s)	591, 612, 840, 869
MboI	GATC	4 cut(s)	589, 610, 838, 867
MboII	GAAGA	7 cut(s)	218, 524, 530, 542, 637, 680, 686
MfeI	CAATTG	1 cut(s)	209
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	3 cut(s)	460, 506, 568
MluCI	AATT	2 cut(s)	185, 209
MlyI	GAGTC	3 cut(s)	41, 236, 811
MmeI	TCCRAC	2 cut(s)	30, 751
MnlI	CCTC	7 cut(s)	186, 245, 256, 412, 546, 575, 768
MroNI	GCCGGC	2 cut(s)	681, 872
MspI	CCGG	5 cut(s)	140, 673, 682, 806, 873
MspR9I	CCNGG	2 cut(s)	141, 674
MunI	CAATTG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	625
NaeI	GCCGGC	2 cut(s)	683, 874
NciI	CCSGG	2 cut(s)	141, 674
NcoI	CCATGG	1 cut(s)	542
NdeII	GATC	4 cut(s)	589, 610, 838, 867
NgoMIV	GCCGGC	2 cut(s)	681, 872
NheI	GCTAGC	3 cut(s)	302, 433, 490
NlaIII	CATG	5 cut(s)	35, 76, 172, 404, 546
NlaIV	GGNNCC	2 cut(s)	810, 840
NmeAIII	GCCGAG	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	135
NsbI	TGCGCA	1 cut(s)	405
NspI	RCATGY	3 cut(s)	35, 76, 404
PaeI	GCATGC	1 cut(s)	404
PciI	ACATGT	2 cut(s)	31, 72
PcsI	WCGNNNNNNNCGW	2 cut(s)	559, 610
PdiI	GCCGGC	2 cut(s)	683, 874
PfeI	GAWTC	1 cut(s)	326
PflFI	GACNNNGTC	1 cut(s)	517
PleI	GAGTC	3 cut(s)	41, 236, 810
PmaCI	CACGTG	1 cut(s)	133
PmlI	CACGTG	1 cut(s)	133
PpsI	GAGTC	3 cut(s)	41, 236, 810
Ppu21I	YACGTR	2 cut(s)	80, 133
PscI	ACATGT	2 cut(s)	31, 72
PshAI	GACNNNNGTC	1 cut(s)	660
PsiI	TTATAA	1 cut(s)	279
PspCI	CACGTG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	810, 840
PsuI	RGATCY	1 cut(s)	838
PsyI	GACNNNGTC	1 cut(s)	517
RsaI	GTAC	5 cut(s)	82, 97, 219, 379, 587
RsaNI	GTAC	5 cut(s)	81, 96, 218, 378, 586
Sau3AI	GATC	4 cut(s)	589, 610, 838, 867
SchI	GAGTC	3 cut(s)	41, 236, 811
ScrFI	CCNGG	2 cut(s)	141, 674
SduI	GDGCHC	3 cut(s)	460, 506, 568
SetI	ASST	9 cut(s)	82, 135, 153, 178, 398, 449, 598, 664, 760
SfaNI	GCATC	2 cut(s)	689, 766
SnaBI	TACGTA	1 cut(s)	80
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	2 cut(s)	185, 209
SspMI	CTAG	8 cut(s)	86, 249, 303, 360, 434, 491, 593, 877
StyD4I	CCNGG	2 cut(s)	139, 672
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	95, 753
TaiI	ACGT	3 cut(s)	82, 135, 153
TaqI	TCGA	6 cut(s)	45, 613, 632, 664, 697, 715
TasI	AATT	2 cut(s)	185, 209
TfiI	GAWTC	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	668
Tth111I	GACNNNGTC	1 cut(s)	517
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	3 cut(s)	35, 76, 404
XspI	CTAG	8 cut(s)	86, 249, 303, 360, 434, 491, 593, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.