Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Forward (+)

12238510 .. 12239874

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTATAAATTAATACCTAAAAGTAGAAAAAAAGGAATGAATAGTGCTACTGCTTCTGAAGAGGATTTCTCTGAGTTTGTAGAGGTTGATCCTACTGGAAGATATGGAAGATACAATGAAGTTCTAGGCAAAGGAGCTTCAAAAACAGTGCCCAGTTATAGGGCCTTTGATGAGTATGAAGGGATTGAAGTGGCATGGAATCAAGTAAAGCTTTATGATTTTCTGAGAAACCCTGAGGATCTCGAGAGGCTATACCGCGAAATTCATCTGCTCAAAACCTTGAAACACAGCAATATCATGAAATTTTACTCTTCCTGGGTTGATACTGCCAAAAGAAACATTAACTTTGTTACTGAGATGTTTACTTCTGGTACTCTCAGACAGTATAGGTTAAAACACAAGAGAGTTAACATAAGAGCAGTGAAGCATTGGTGTAAGCAGATTTTGAAAGGGCTTCTCTATCTTCACAGCCATGACCCTCCTGTGATTCACAGAGATCGATCCAGTGTGACAACATTTTCATCAATGGGAACCAAGGTGAGGTCAAGATTGGTGATCTTGGCCTCGCTGCTGTCCTCCGTAAATCCCACGCTGATCGTTGTGTTGGAACACCGGAGTTCATGGCTCCAGAGGTTTACGAAGAGGAATACAATGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

220

Amino Acids

25.63

Weight (kDa)

9.99

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	39 - 166	8.2e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	39 - 166	6.2e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	3 cut(s)	83, 246, 495
AcsI	RAATTY	2 cut(s)	261, 302
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	159, 540
AgsI	TTSAA	4 cut(s)	141, 188, 283, 448
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	2 cut(s)	137, 211
AluI	AGCT	2 cut(s)	137, 211
AlwI	GGATC	3 cut(s)	83, 246, 495
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	162, 561
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	2 cut(s)	261, 302
AseI	ATTAAT	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	550, 565
AvaI	CYCGRG	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	316
BfaI	CTAG	1 cut(s)	125
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	2 cut(s)	532, 626
BmrFI	CCNGG	1 cut(s)	316
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	611
Bsa29I	ATCGAT	1 cut(s)	499
BsaJI	CCNNGG	2 cut(s)	315, 534
BsaWI	WCCGGW	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 540
Bse1I	ACTGG	3 cut(s)	100, 153, 504
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	316
BseCI	ATCGAT	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	315, 534
BseLI	CCNNNNNNNGG	2 cut(s)	159, 540
BseMII	CTCAG	5 cut(s)	63, 215, 225, 345, 391
BseNI	ACTGG	3 cut(s)	100, 153, 504
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	164, 563
BshVI	ATCGAT	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	159, 540
BsnI	GGCC	2 cut(s)	164, 563
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	6 cut(s)	88, 238, 496, 500, 555, 594
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	164, 563
BspCNI	CTCAG	5 cut(s)	64, 216, 226, 346, 390
BspDI	ATCGAT	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	532, 626
BspPI	GGATC	3 cut(s)	83, 246, 495
BsrI	ACTGG	3 cut(s)	100, 153, 504
BssECI	CCNNGG	2 cut(s)	315, 534
BssMI	GATC	6 cut(s)	88, 238, 496, 500, 555, 594
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	148, 384
Bst6I	CTCTTC	3 cut(s)	54, 316, 635
BstDEI	CTNAG	5 cut(s)	72, 224, 234, 354, 377
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	6 cut(s)	91, 241, 499, 503, 558, 597
BstMBI	GATC	6 cut(s)	88, 238, 496, 500, 555, 594
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	499
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	164, 563
BsuTUI	ATCGAT	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	153, 426, 511
CciI	TCATGA	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	4 cut(s)	195, 298, 473, 621
CviJI	RGCY	8 cut(s)	137, 164, 211, 250, 454, 471, 563, 625
CviKI_1	RGCY	8 cut(s)	137, 164, 211, 250, 454, 471, 563, 625
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	5 cut(s)	72, 224, 234, 354, 377
DpnI	GATC	6 cut(s)	90, 240, 498, 502, 557, 596
DpnII	GATC	6 cut(s)	88, 238, 496, 500, 555, 594
Eam1104I	CTCTTC	3 cut(s)	54, 316, 635
EarI	CTCTTC	3 cut(s)	54, 316, 635
Eco130I	CCWWGG	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	198, 301, 476, 624
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	4 cut(s)	194, 297, 472, 620
Fnu4HI	GCNGC	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	1 cut(s)	569
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	2 cut(s)	164, 563
HapII	CCGG	1 cut(s)	613
Hin1II	CATG	4 cut(s)	198, 301, 476, 624
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	199, 487
HpaI	GTTAAC	1 cut(s)	409
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	2 cut(s)	550, 565
Hpy166II	GTNNAC	3 cut(s)	363, 409, 636
Hpy188I	TCNGA	4 cut(s)	58, 73, 225, 380
Hpy188III	TCNNGA	5 cut(s)	242, 244, 298, 546, 628
Hpy8I	GTNNAC	3 cut(s)	363, 409, 636
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	148, 384
HpyF3I	CTNAG	5 cut(s)	72, 224, 234, 354, 377
Hsp92II	CATG	4 cut(s)	198, 301, 476, 624
KspAI	GTTAAC	1 cut(s)	409
Kzo9I	GATC	6 cut(s)	88, 238, 496, 500, 555, 594
LmnI	GCTCC	2 cut(s)	134, 630
Lsp1109I	GCAGC	1 cut(s)	555
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	349, 508
MalI	GATC	6 cut(s)	90, 240, 498, 502, 557, 596
MboI	GATC	6 cut(s)	88, 238, 496, 500, 555, 594
MboII	GAAGA	6 cut(s)	71, 111, 120, 303, 455, 652
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	3 cut(s)	8, 261, 302
MmeI	TCCRAC	1 cut(s)	585
MseI	TTAA	4 cut(s)	11, 342, 392, 408
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	258
NdeII	GATC	6 cut(s)	88, 238, 496, 500, 555, 594
NlaIII	CATG	4 cut(s)	198, 301, 476, 624
NlaIV	GGNNCC	2 cut(s)	532, 626
NmuCI	GTSAC	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	199, 487
PkrI	GCNGC	1 cut(s)	570
PshBI	ATTAAT	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	532, 626
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	11, 342, 392, 408
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	6 cut(s)	88, 238, 496, 500, 555, 594
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	9 cut(s)	19, 87, 139, 213, 281, 392, 540, 545, 635
Sfr274I	CTCGAG	1 cut(s)	242
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	8, 261, 302
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	148, 384
TaqI	TCGA	2 cut(s)	243, 499
TasI	AATT	3 cut(s)	8, 261, 302
TfiI	GAWTC	2 cut(s)	199, 487
Tru1I	TTAA	4 cut(s)	11, 342, 392, 408
Tru9I	TTAA	4 cut(s)	11, 342, 392, 408
TscAI	CASTG	3 cut(s)	153, 426, 511
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	7 cut(s)	53, 132, 192, 254, 314, 510, 609
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	3 cut(s)	153, 426, 511
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	2 cut(s)	261, 302
XhoI	CTCGAG	1 cut(s)	242
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.