Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

30020707 .. 30022943

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCCTCAGGATTTGCCGTCGGACCAGGAAACGGACGATGCCGAAGCTGAGTTCGTTGAAATTGATCCCTCTGGTCGTTACGGACGGTATAAAGAGGTTTTAGGCAAAGGGGCTTTCAAGAAAGTATATAGAGCGTTTGATGAATTGGAAGGAATTGAAGTAGCTTGGAACCAAGTTAAGGTGGCAGATCTATTGCGCAACTCTGAAGATTTGGAGCGCCTTTATTCGGAAGTTCATTTGCTCAAGACTTTGAAGCACAAGAACATTATTAAGTTTTACAACTCTTGGGTTGATACCAAGCATGAAAATATCAACTTCATTACAGAGATTTTCACTTCGGGAAACTTGAGGCAATACCGGAGGAAACATAAGCACGTTGATTTGAGGGCACTAAAAAAGTGGTCTAGGCAGATCTACAGAATGAGTTGTGGCCTGGGCCAGTCTCTCAACTGCATACTTAATTTCCTCATTTCAAAATTTGGTAGTTTGAGTTTATTTTTAACCATTCCGTTATGTTTACAGTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

176

Amino Acids

20.63

Weight (kDa)

8.69

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 139	5.2e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 138	1.3e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	197
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	31, 178, 226
AgsI	TTSAA	5 cut(s)	59, 118, 158, 253, 474
AjnI	CCWGG	2 cut(s)	24, 432
AluBI	AGCT	2 cut(s)	47, 164
AluI	AGCT	2 cut(s)	47, 164
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	2 cut(s)	430, 436
ApoI	RAATTY	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	198, 219
AspS9I	GGNCC	2 cut(s)	22, 436
AvaII	GGWCC	1 cut(s)	22
AxyI	CCTNAGG	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	26, 434
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	220
BglII	AGATCT	2 cut(s)	187, 411
Bme1390I	CCNGG	2 cut(s)	26, 434
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	22, 436
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	26, 434
BmsI	GCATC	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	227, 367
BsaJI	CCNNGG	1 cut(s)	433
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 178, 226
Bse1I	ACTGG	1 cut(s)	439
Bse21I	CCTNAGG	1 cut(s)	6
BseBI	CCWGG	2 cut(s)	26, 434
BseDI	CCNNGG	1 cut(s)	433
BseLI	CCNNNNNNNGG	3 cut(s)	31, 178, 226
BseMII	CTCAG	2 cut(s)	20, 39
BseNI	ACTGG	1 cut(s)	439
BseSI	GKGCMC	1 cut(s)	391
BshFI	GGCC	2 cut(s)	432, 438
BsiSI	CCGG	1 cut(s)	358
BslI	CCNNNNNNNGG	3 cut(s)	31, 178, 226
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	432, 438
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	64, 187, 411
BspANI	GGCC	2 cut(s)	432, 438
BspCNI	CTCAG	2 cut(s)	19, 40
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	3 cut(s)	64, 187, 411
Bst2UI	CCWGG	2 cut(s)	26, 434
Bst4CI	ACNGT	2 cut(s)	87, 522
BstDEI	CTNAG	2 cut(s)	6, 48
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	2 cut(s)	198, 219
BstKTI	GATC	3 cut(s)	67, 190, 414
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	3 cut(s)	64, 187, 411
BstNI	CCWGG	2 cut(s)	26, 434
BstSCI	CCNGG	2 cut(s)	24, 432
BstSFI	CTRYAG	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	391
BstX2I	RGATCY	2 cut(s)	187, 411
BstYI	RGATCY	2 cut(s)	187, 411
Bsu36I	CCTNAGG	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	432, 438
CfoI	GCGC	2 cut(s)	198, 219
Cfr13I	GGNCC	2 cut(s)	22, 436
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	5 cut(s)	47, 113, 164, 432, 438
CviKI_1	RGCY	5 cut(s)	47, 113, 164, 432, 438
DdeI	CTNAG	2 cut(s)	6, 48
DpnI	GATC	3 cut(s)	66, 189, 413
DpnII	GATC	3 cut(s)	64, 187, 411
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	24, 432
FaeI	CATG	1 cut(s)	305
FaiI	YATR	7 cut(s)	90, 127, 129, 303, 369, 455, 514
FatI	CATG	1 cut(s)	301
FspBI	CTAG	1 cut(s)	405
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	2 cut(s)	197, 218
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	432, 438
HapII	CCGG	1 cut(s)	358
HhaI	GCGC	2 cut(s)	198, 219
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	2 cut(s)	196, 217
HinP1I	GCGC	2 cut(s)	196, 217
HpaII	CCGG	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	3 cut(s)	22, 205, 229
Hpy188III	TCNNGA	4 cut(s)	8, 118, 244, 339
Hpy8I	GTNNAC	1 cut(s)	518
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	2 cut(s)	87, 522
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	1 cut(s)	453
HpyF3I	CTNAG	2 cut(s)	6, 48
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	2 cut(s)	196, 217
Kzo9I	GATC	3 cut(s)	64, 187, 411
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	7 cut(s)	11, 38, 57, 371, 419, 446, 452
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	66, 189, 413
MboI	GATC	3 cut(s)	64, 187, 411
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	2 cut(s)	187, 411
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	5 cut(s)	60, 143, 153, 460, 476
MnlI	CCTC	7 cut(s)	15, 79, 88, 342, 354, 378, 476
MseI	TTAA	4 cut(s)	177, 270, 459, 500
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	2 cut(s)	26, 434
MvaI	CCWGG	2 cut(s)	26, 434
NdeII	GATC	3 cut(s)	64, 187, 411
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	170
NsbI	TGCGCA	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	24, 432
PspGI	CCWGG	2 cut(s)	24, 432
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	22, 436
PsuI	RGATCY	2 cut(s)	187, 411
SaqAI	TTAA	4 cut(s)	177, 270, 459, 500
Sau3AI	GATC	3 cut(s)	64, 187, 411
Sau96I	GGNCC	2 cut(s)	22, 436
ScrFI	CCNGG	2 cut(s)	26, 434
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	5 cut(s)	49, 99, 166, 183, 378
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	415
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	242, 346
SmoI	CTYRAG	2 cut(s)	242, 346
Sse9I	AATT	5 cut(s)	60, 143, 153, 460, 476
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	24, 432
TaaI	ACNGT	2 cut(s)	87, 522
TaiI	ACGT	1 cut(s)	378
TasI	AATT	5 cut(s)	60, 143, 153, 460, 476
Tru1I	TTAA	4 cut(s)	177, 270, 459, 500
Tru9I	TTAA	4 cut(s)	177, 270, 459, 500
TspDTI	ATGAA	4 cut(s)	156, 224, 307, 318
TspGWI	ACGGA	3 cut(s)	47, 96, 498
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	476
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.