Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041954.1

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Forward (+)

480 .. 701

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041954.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atggcagtcgaggatcctaatacttttgatccagattccgaaccatttgtggaggttgatccaaccgggcgttttggaaggtatgatgttctccttggtaagggtgctgtgaagaaggtgtatagggcatttgatcagcagcaaggtaacgaggtggcatggaataaggtgtggttaaggaaattgagcgacgatccagtgctatcgaatcatctggactca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

74

Amino Acids

8.41

Weight (kDa)

4.72

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	8, 21, 23, 53, 188
AfiI	CCNNNNNNNGG	1 cut(s)	100
AlwI	GGATC	5 cut(s)	8, 21, 23, 53, 188
ApeKI	GCWGC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	151
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	67
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	100
Bsp143I	GATC	5 cut(s)	13, 28, 58, 133, 193
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	5 cut(s)	8, 21, 23, 53, 188
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	5 cut(s)	13, 28, 58, 133, 193
BssT1I	CCWWGG	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstKTI	GATC	5 cut(s)	16, 31, 61, 136, 196
BstMBI	GATC	5 cut(s)	13, 28, 58, 133, 193
BstSCI	CCNGG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	204
CviAII	CATG	1 cut(s)	159
DpnI	GATC	5 cut(s)	15, 30, 60, 135, 195
DpnII	GATC	5 cut(s)	13, 28, 58, 133, 193
Eco130I	CCWWGG	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	162
FaiI	YATR	3 cut(s)	84, 123, 160
FatI	CATG	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	140
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	1 cut(s)	162
HinfI	GANTC	3 cut(s)	35, 208, 218
HpaII	CCGG	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	32, 215
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	72, 109
Hsp92II	CATG	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	13, 28, 58, 133, 193
LpnPI	CCDG	4 cut(s)	45, 79, 200, 210
Lsp1109I	GCAGC	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	5 cut(s)	15, 30, 60, 135, 195
MboI	GATC	5 cut(s)	13, 28, 58, 133, 193
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	4, 46, 145
MseI	TTAA	1 cut(s)	176
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	67
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	5 cut(s)	13, 28, 58, 133, 193
NlaIII	CATG	1 cut(s)	162
NlaIV	GGNNCC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	35, 208
PkrI	GCNGC	1 cut(s)	141
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	5 cut(s)	13, 28, 58, 133, 193
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	6 cut(s)	57, 83, 120, 148, 156, 171
SgeI	CNNG	9 cut(s)	22, 44, 78, 79, 107, 155, 163, 171, 209
Sse9I	AATT	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	94
TaqI	TCGA	2 cut(s)	9, 206
TasI	AATT	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	35, 208
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	1 cut(s)	139
TspRI	CASTG	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.