Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034052.1

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 609

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034052.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 380 bp

atataaggcttttgacgaagttgaaggtttagaggtggcatggagccaggtgcatgttgaggatgtgttgcagaccccggagcaactccagagattgtattcggaggtgcatctgctgaagtcgttgaagcatgaaaatattatcaagttctgtgactggtgggtcgatgataagaacaagaccatcaacattatcacagagttgttcacttctgggagcttgaggcagtatcgaaggaagcataaatgtgttgaattgaaggccatcaagaagtgggcaaggcagattcttcgaggcctgcactatctgcattctcacaatcctccaattattcatagagatttgaaatgcgacaacatatttgtcaatggaaatcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

126

Amino Acids

15.04

Weight (kDa)

8.79

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	138
AgsI	TTSAA	5 cut(s)	24, 128, 255, 260, 347
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
AoxI	GGCC	2 cut(s)	262, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AsuC2I	CCSGG	1 cut(s)	78
BccI	CCATC	2 cut(s)	192, 273
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BciT130I	CCWGG	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	78
Bme1390I	CCNGG	2 cut(s)	48, 78
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	48, 78
BmsI	GCATC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	264, 298
BsiSI	CCGG	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	264, 298
BspANI	GGCC	2 cut(s)	264, 298
BspLI	GGNNCC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	46, 76
BsuRI	GGCC	2 cut(s)	264, 298
BtsCI	GGATG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	300
CviAII	CATG	3 cut(s)	40, 54, 132
CviJI	RGCY	5 cut(s)	9, 46, 220, 264, 298
CviKI_1	RGCY	5 cut(s)	9, 46, 220, 264, 298
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	3 cut(s)	43, 57, 135
FaiI	YATR	7 cut(s)	4, 41, 55, 133, 244, 337, 360
FatI	CATG	3 cut(s)	39, 53, 131
FokI	GGATG	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	264, 298
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	3 cut(s)	43, 57, 135
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	2 cut(s)	89, 269
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	18, 229, 254
HpyCH4V	TGCA	5 cut(s)	53, 71, 110, 302, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	43, 57, 135
LmnI	GCTCC	3 cut(s)	43, 80, 217
LpnPI	CCDG	7 cut(s)	33, 60, 91, 102, 143, 199, 312
LweI	GCATC	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	282
MluCI	AATT	2 cut(s)	255, 328
MnlI	CCTC	6 cut(s)	26, 53, 98, 217, 288, 334
MslI	CAYNNNNRTG	1 cut(s)	247
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	48, 78
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	78
NlaIII	CATG	3 cut(s)	43, 57, 135
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	57
PceI	AGGCCT	1 cut(s)	298
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	48, 78
SetI	ASST	5 cut(s)	29, 37, 52, 109, 222
SfaNI	GCATC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	255, 328
SseBI	AGGCCT	1 cut(s)	298
SspI	AATATT	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	46, 76
TaqI	TCGA	3 cut(s)	166, 233, 293
TasI	AATT	2 cut(s)	255, 328
TfiI	GAWTC	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	148, 324
XceI	RCATGY	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.