Rroxscaffold_6G00411430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002870
Physical Location & Seq
Forward (+)
33937086 .. 33937639
554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411430.1

Sequence Viewer

Length: 447 bp
ATGAACCAAACGAGGTTAGAGCTTCCTTGGCTAGATAATGTACTACTTGACTACACTTTCTTGAAATCTTCTTCAATTAAAACTTCTCAAGTGCTTTGGGTTTCATGGGAACTTCTGTCTCGAGAGGGGTGTGATCCAGCTAAACACGGGGTGCATCGGTCTGCTACTATCGCTATCATCTCACTTATATGCAAAACGGACGAAGGTCGGAGGGAAGACCGGGTGCGCCGGCCTTCAACGCTCCGATGCCTAAGTCGGTACCATTACAAGATAATGATAATGGAAAGTGATAGTAAACAGTTACCTCTTTGGGTTGTTGAAGATGACCTTAATGTAGCAGATTTGTGGGAGCTTGGTTGCGTTTCTTTCGATGTGGAACGCTTGGGGTTCCCGATATTGTCCCGAGGGGTATCGGGACCCTCAGCTGGGAGCTGTCCTTACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.88

Weight (kDa)

6.29

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AclWI GGATC 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 2 cut(s) 42, 260
AfiI CCNNNNNNNGG 2 cut(s) 425, 426
AgsI TTSAA 4 cut(s) 64, 75, 237, 320
AluBI AGCT 5 cut(s) 22, 140, 352, 425, 432
AluI AGCT 5 cut(s) 22, 140, 352, 425, 432
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 128
Ama87I CYCGRG 2 cut(s) 120, 402
AoxI GGCC 1 cut(s) 230
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 221
AvaI CYCGRG 2 cut(s) 120, 402
AvaII GGWCC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 421
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 2 cut(s) 120, 402
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 4 cut(s) 260, 389, 417, 418
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 2 cut(s) 163, 236
BoxI GACNNNNGTC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 421
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 26, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 426
Bse118I RCCGGY 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 26, 403
BseLI CCNNNNNNNGG 2 cut(s) 425, 426
BseMII CTCAG 1 cut(s) 435
BseYI CCCAGC 1 cut(s) 425
BshFI GGCC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 258
BsiHKCI CYCGRG 2 cut(s) 120, 402
BsiSI CCGG 2 cut(s) 220, 229
BslFI GGGAC 2 cut(s) 385, 429
BslI CCNNNNNNNGG 2 cut(s) 425, 426
BsmAI GTCTC 1 cut(s) 123
BsmFI GGGAC 2 cut(s) 385, 429
BsnI GGCC 1 cut(s) 232
BsoBI CYCGRG 2 cut(s) 120, 402
Bsp143I GATC 1 cut(s) 133
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 434
BspLI GGNNCC 4 cut(s) 260, 389, 417, 418
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 26, 403
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 251, 421
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 28, 170, 238
BstPAI GACNNNNGTC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 222
BsuRI GGCC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 230
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 2 cut(s) 41, 259
CviAII CATG 1 cut(s) 105
CviJI RGCY 7 cut(s) 22, 31, 140, 232, 352, 425, 432
CviKI_1 RGCY 7 cut(s) 22, 31, 140, 232, 352, 425, 432
CviQI GTAC 2 cut(s) 41, 259
DdeI CTNAG 2 cut(s) 251, 421
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DraIII CACNNNGTG 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 416
Eco88I CYCGRG 2 cut(s) 120, 402
EcoO109I RGGNCCY 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 1 cut(s) 108
FaiI YATR 4 cut(s) 106, 188, 190, 445
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 2 cut(s) 385, 429
FatI CATG 1 cut(s) 104
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 227
GsaI CCCAGC 1 cut(s) 429
HaeIII GGCC 1 cut(s) 232
HapII CCGG 2 cut(s) 220, 229
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 108
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HpaII CCGG 2 cut(s) 220, 229
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 2 cut(s) 210, 245
Hpy188III TCNNGA 6 cut(s) 61, 120, 122, 391, 402, 414
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 197, 243
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 154, 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 170, 238
HpyF3I CTNAG 2 cut(s) 251, 421
Hsp92II CATG 1 cut(s) 108
HspAI GCGC 1 cut(s) 226
KflI GGGWCCC 1 cut(s) 416
KpnI GGTACC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 228
KroNI GCCGGC 1 cut(s) 230
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 3 cut(s) 246, 349, 429
LpnPI CCDG 4 cut(s) 150, 233, 242, 411
LweI GCATC 2 cut(s) 163, 236
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 300
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 4 cut(s) 60, 63, 227, 332
MluCI AATT 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 6 cut(s) 6, 118, 204, 315, 398, 430
MroNI GCCGGC 1 cut(s) 228
MseI TTAA 2 cut(s) 78, 330
MslI CAYNNNNRTG 1 cut(s) 187
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 220, 229
MspR9I CCNGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 28, 170, 238
NaeI GCCGGC 1 cut(s) 230
NciI CCSGG 1 cut(s) 221
NdeII GATC 1 cut(s) 133
NgoMIV GCCGGC 1 cut(s) 228
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 4 cut(s) 260, 389, 417, 418
PaeR7I CTCGAG 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 416
PshAI GACNNNNGTC 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 416
PspFI CCCAGC 1 cut(s) 425
PspN4I GGNNCC 4 cut(s) 260, 389, 417, 418
PspPI GGNCC 1 cut(s) 416
PspPPI RGGWCCY 1 cut(s) 416
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 42, 260
RsaNI GTAC 2 cut(s) 41, 259
RseI CAYNNNNRTG 1 cut(s) 187
SaqAI TTAA 2 cut(s) 78, 330
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 221
SetI ASST 9 cut(s) 17, 24, 142, 208, 307, 330, 354, 427, 434
SfaNI GCATC 2 cut(s) 163, 236
Sfr274I CTCGAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 416
SlaI CTCGAG 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 187
SmlI CTYRAG 2 cut(s) 87, 120
SmoI CTYRAG 2 cut(s) 87, 120
Sse9I AATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 121, 369
TaqII GACCGA 1 cut(s) 147
TasI AATT 1 cut(s) 75
TatI WGTACW 1 cut(s) 40
Tru1I TTAA 2 cut(s) 78, 330
Tru9I TTAA 2 cut(s) 78, 330
TspDTI ATGAA 2 cut(s) 17, 93
TspGWI ACGGA 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 416
XhoI CTCGAG 1 cut(s) 120
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.