Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

14280340 .. 14281607

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG167100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCCTGAAGATTTGCCGTCGGATCAGGAAGCGGACGATGATGAGGCTGAGTTCACTAAGGTTGATCTCACTGGTCGTTACGGACGGAGGTCAGTTTTCATGGAGTTCTCTTCAGAAGGCTATGCCGCTTCTGCACCTTTGTGCTACATTGAGCCCATTTTTCAGTGGGGATCATGGCAGCCTTTACGCACAATCCCCACACTACAAAGGCGAGGCAGATCTAGTATGCCCCCTCAAGCATCTAAGGATGTCCCATACAGTTTTCAGTTCCCTCCCATGATGAAGAAGCCAAAGTGGTGGTGGTGGACATTAGCATGTCTCCCCTGCTTAATGCTCCCACACGAGACATGGATGCATGCTGAGACAGCCTATCAGCTGCACCCTTTCCTGGAAGACTTTGAGTTCTTCACATACCCATTTCTTGGCGCCGTTGGGAGTTTGCCCAGCTGGTTCTTGATGGCATACTTTTTCGTTGCATATCTTGGAATTGTAAGGAAAAAGGAGTGCCCTCACTTCTTCAGATTTCATGTGGTGATGGGCATACTGTTGGTGAATGCCTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCACTTGCTATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

202

Amino Acids

23.63

Weight (kDa)

5.94

Isoelectric Point (pI)

62.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	72 - 201	5.2e-41	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	422
AciI	CCGC	2 cut(s)	32, 126
AclWI	GGATC	2 cut(s)	30, 178
AcuI	CTGAAG	3 cut(s)	27, 96, 502
AcyI	GRCGYC	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	388, 422
AjnI	CCWGG	1 cut(s)	387
AleI	CACNNNNGTG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	376, 447
AluI	AGCT	2 cut(s)	376, 447
Alw26I	GTCTC	3 cut(s)	323, 338, 356
AlwI	GGATC	2 cut(s)	30, 178
ApeKI	GCWGC	2 cut(s)	178, 376
AspLEI	GCGC	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	544, 562, 577
BaeGI	GKGCMC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	190, 363
BccI	CCATC	2 cut(s)	451, 529
BceAI	ACGGC	2 cut(s)	413, 567
BciT130I	CCWGG	1 cut(s)	389
BcoDI	GTCTC	3 cut(s)	323, 338, 356
BfaI	CTAG	2 cut(s)	222, 607
BfoI	RGCGCY	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	553
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	3 cut(s)	126, 179, 377
BlsI	GCNGC	3 cut(s)	127, 180, 378
Bme1390I	CCNGG	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	3 cut(s)	248, 342, 579
BoxI	GACNNNNGTC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 422
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	389
BseGI	GGATG	3 cut(s)	253, 357, 594
BseLI	CCNNNNNNNGG	2 cut(s)	388, 422
BseMII	CTCAG	2 cut(s)	39, 351
BseNI	ACTGG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	190, 363
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	2 cut(s)	117, 362
BshNI	GGYRCC	1 cut(s)	425
BslFI	GGGAC	2 cut(s)	236, 586
BslI	CCNNNNNNNGG	2 cut(s)	388, 422
BsmAI	GTCTC	3 cut(s)	323, 338, 356
BsmFI	GGGAC	2 cut(s)	236, 586
BsmI	GAATGC	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	156, 509
Bsp143I	GATC	4 cut(s)	22, 64, 170, 218
BspACI	CCGC	2 cut(s)	32, 126
BspCNI	CTCAG	2 cut(s)	40, 352
BspLI	GGNNCC	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	2 cut(s)	30, 178
BspT107I	GGYRCC	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	4 cut(s)	22, 64, 170, 218
BssNI	GRCGYC	1 cut(s)	426
BssSI	CACGAG	1 cut(s)	341
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	3 cut(s)	260, 546, 577
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	4 cut(s)	48, 57, 243, 360
BstF5I	GGATG	3 cut(s)	253, 357, 594
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	4 cut(s)	25, 67, 173, 221
BstMAI	GTCTC	3 cut(s)	323, 338, 356
BstMBI	GATC	4 cut(s)	22, 64, 170, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 365
BstNI	CCWGG	1 cut(s)	389
BstNSI	RCATGY	2 cut(s)	318, 359
BstPAI	GACNNNNGTC	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	509
BstV1I	GCAGC	2 cut(s)	190, 363
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	218
BtsCI	GGATG	3 cut(s)	253, 357, 594
BtsIMutI	CAGTG	2 cut(s)	69, 170
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	428
CviAII	CATG	7 cut(s)	100, 174, 277, 315, 348, 356, 527
CviJI	RGCY	9 cut(s)	47, 120, 154, 181, 289, 368, 376, 447, 582
CviKI_1	RGCY	9 cut(s)	47, 120, 154, 181, 289, 368, 376, 447, 582
DdeI	CTNAG	4 cut(s)	48, 57, 243, 360
DinI	GGCGCC	1 cut(s)	427
DpnI	GATC	4 cut(s)	24, 66, 172, 220
DpnII	GATC	4 cut(s)	22, 64, 170, 218
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	156
Eco57I	CTGAAG	3 cut(s)	27, 96, 502
EcoRII	CCWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	427
EheI	GGCGCC	1 cut(s)	427
FaeI	CATG	7 cut(s)	103, 177, 280, 318, 351, 359, 530
FaqI	GGGAC	2 cut(s)	236, 586
FatI	CATG	7 cut(s)	99, 173, 276, 314, 347, 355, 526
Fnu4HI	GCNGC	3 cut(s)	126, 179, 377
FokI	GGATG	3 cut(s)	260, 364, 601
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	126, 179, 377
FspBI	CTAG	2 cut(s)	222, 607
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	126, 179, 377
GsaI	CCCAGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	429
HhaI	GCGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	7 cut(s)	103, 177, 280, 318, 351, 359, 530
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HphI	GGTGA	3 cut(s)	544, 562, 577
Hpy166II	GTNNAC	2 cut(s)	54, 306
Hpy188I	TCNGA	3 cut(s)	22, 115, 521
Hpy188III	TCNNGA	2 cut(s)	26, 454
Hpy8I	GTNNAC	2 cut(s)	54, 306
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	3 cut(s)	260, 546, 577
HpyCH4V	TGCA	5 cut(s)	134, 355, 379, 476, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 365
HpyF3I	CTNAG	4 cut(s)	48, 57, 243, 360
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	7 cut(s)	103, 177, 280, 318, 351, 359, 530
HspAI	GCGC	1 cut(s)	426
KasI	GGCGCC	1 cut(s)	425
Kzo9I	GATC	4 cut(s)	22, 64, 170, 218
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	9 cut(s)	11, 18, 57, 337, 374, 401, 433, 457, 548
Lsp1109I	GCAGC	2 cut(s)	190, 363
LweI	GCATC	3 cut(s)	248, 342, 579
MaeI	CTAG	2 cut(s)	222, 607
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	4 cut(s)	24, 66, 172, 220
MboI	GATC	4 cut(s)	22, 64, 170, 218
MboII	GAAGA	6 cut(s)	20, 102, 295, 397, 404, 508
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	156, 509
MluCI	AATT	1 cut(s)	486
Mly113I	GGCGCC	1 cut(s)	426
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	6 cut(s)	37, 81, 206, 243, 282, 519
Mph1103I	ATGCAT	1 cut(s)	357
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	2 cut(s)	139, 313
MspA1I	CMGCKG	2 cut(s)	376, 447
MspR9I	CCNGG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	131, 365
NarI	GGCGCC	1 cut(s)	426
NdeII	GATC	4 cut(s)	22, 64, 170, 218
NlaIII	CATG	7 cut(s)	103, 177, 280, 318, 351, 359, 530
NlaIV	GGNNCC	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	357
NspI	RCATGY	2 cut(s)	318, 359
OliI	CACNNNNGTG	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	553
PctI	GAATGC	1 cut(s)	559
PflMI	CCANNNNNTGG	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	127, 180, 378
PluTI	GGCGCC	1 cut(s)	429
PshAI	GACNNNNGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	218
PvuII	CAGCTG	2 cut(s)	376, 447
RseI	CAYNNNNRTG	2 cut(s)	139, 313
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	126, 179, 377
Sau3AI	GATC	4 cut(s)	22, 64, 170, 218
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	156, 509
SetI	ASST	6 cut(s)	63, 92, 139, 378, 449, 567
SfaNI	GCATC	3 cut(s)	248, 342, 579
SfoI	GGCGCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	2 cut(s)	139, 313
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	359
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	2 cut(s)	32, 126
SspDI	GGCGCC	1 cut(s)	425
SspMI	CTAG	2 cut(s)	222, 607
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	260, 546, 577
TasI	AATT	1 cut(s)	486
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	76, 170
TseI	GCWGC	2 cut(s)	178, 376
TspDTI	ATGAA	3 cut(s)	88, 296, 515
TspGWI	ACGGA	2 cut(s)	96, 100
TspRI	CASTG	2 cut(s)	76, 170
Van91I	CCANNNNNTGG	1 cut(s)	422
XceI	RCATGY	2 cut(s)	318, 359
XcmI	CCANNNNNNNNNTGG	2 cut(s)	297, 345
XspI	CTAG	2 cut(s)	222, 607
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.