Rmu_sc0006483.1_g000012

Protein TIC 20-I, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006483.1
Physical Location & Seq
Reverse (-)
75955 .. 79189
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006483.1_g000012.1.cds

Sequence Viewer

Length: 1188 bp
atggagttctcttcagaaggctatgccgcttctgcacctttatgctacattgagcccatttttcagtggggatcatggcagcctttacgcacaatccccacactacaaaggcgaggcagatctagtatgccccctcaagcatctaaggatgtcccatacagttttcagttccctcccatgatgaagaagccaaagtggtggtggtggacattagcatgtctcccctacttaatgctcccacacgagacatggatgcatgctgagacagcctatcagctgcaccctttcctggaagactttgagttcttcacatacccatttcttggcgccgttgggagtttgcccagctggttcttgatggcatactttttcgttgcatatcttggaattgtaaggaaaaaggagtgccctcacttcttcagatttcatgtggtgatgggcatactgttggtgattgccttgcaggtgatagggactgtgagccgttggatgccacttgctatttactggggtaaattcgggatgcacttctggacagccgttgcatttgcttacctatttacagcgttggagacttggagtgcatacactgtgctcttgctggtaggggtggcaaaaatccccagcggggaggagctccattggatattcacccctaatggggggagaattcgggaacaaatggggaatagggatggggatccccaatccccgctatctaagattggggatgaggcggggatggtgtggactagggcaaaaacccagcccaaattacgccttagaaggcaacccaaagagaagaggcccagcaagccaggattgacgcaagcccagaccaccattccaccacgcctgcagcctcctgtgcagcacagcccacgagttcctctacgagccgctccgccacgggccggctaccacgtaccagttgttccgccacagagtctcaccacgatccgcgctacccaagagtcctaccaagagccgcaccgtcgcgctccaccactccagcactaccccgaactcctccccacgagccccatcttcgcccaaacgctccacgatccactggatctggaacgtcctgtccctgcacaagaactgccacaccacaccccgaaaagtctcccaaacctatcatcaaaaccgccagcaataccacaagtcaaacatcctctgtcctga

Protein Analysis

395

Amino Acids

45.22

Weight (kDa)

9.7

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 323
AccBSI CCGCTC 1 cut(s) 902
AccII CGCG 2 cut(s) 963, 999
AclWI GGATC 6 cut(s) 79, 695, 708, 952, 1061, 1083
AcsI RAATTY 2 cut(s) 515, 669
AcuI CTGAAG 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 1 cut(s) 927
AfiI CCNNNNNNNGG 7 cut(s) 289, 323, 628, 660, 661, 662, 914
AjnI CCWGG 2 cut(s) 288, 817
AloI GAACNNNNNNTCC 2 cut(s) 1074, 1106
AluBI AGCT 3 cut(s) 277, 348, 637
AluI AGCT 3 cut(s) 277, 348, 637
Alw21I GWGCWC 2 cut(s) 597, 639
Alw26I GTCTC 6 cut(s) 224, 239, 257, 566, 953, 1133
AlwI GGATC 6 cut(s) 79, 695, 708, 952, 1061, 1083
AoxI GGCC 2 cut(s) 806, 912
ApeKI GCWGC 4 cut(s) 79, 277, 859, 871
ApoI RAATTY 2 cut(s) 515, 669
AspLEI GCGC 3 cut(s) 329, 965, 1001
AspS9I GGNCC 2 cut(s) 807, 912
AsuHPI GGTGA 5 cut(s) 445, 463, 478, 643, 943
BaeGI GKGCMC 1 cut(s) 410
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 3 cut(s) 57, 639, 1043
BauI CACGAG 3 cut(s) 242, 882, 1036
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 597, 639
BbvI GCAGC 4 cut(s) 91, 264, 871, 883
BccI CCATC 5 cut(s) 352, 430, 689, 736, 1052
BceAI ACGGC 3 cut(s) 314, 468, 524
BciT130I CCWGG 2 cut(s) 290, 819
BcoDI GTCTC 6 cut(s) 224, 239, 257, 566, 953, 1133
BfaI CTAG 2 cut(s) 123, 753
BfmI CTRYAG 1 cut(s) 857
BfoI RGCGCY 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 454
BglII AGATCT 1 cut(s) 119
BisI GCNGC 7 cut(s) 27, 80, 278, 860, 872, 900, 989
BlsI GCNGC 7 cut(s) 28, 81, 279, 861, 873, 901, 990
Bme1390I CCNGG 2 cut(s) 290, 819
BmgT120I GGNCC 2 cut(s) 807, 912
BmiI GGNNCC 2 cut(s) 328, 702
BmrFI CCNGG 2 cut(s) 290, 819
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 4 cut(s) 149, 243, 480, 513
BmuI ACTGGG 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 995
BpuEI CTTGAG 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 925
BsaBI GATNNNNATC 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 908
Bsc4I CCNNNNNNNGG 7 cut(s) 289, 323, 628, 660, 661, 662, 914
Bse118I RCCGGY 1 cut(s) 914
Bse1I ACTGG 3 cut(s) 512, 929, 1077
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 2 cut(s) 290, 819
BseDI CCNNGG 1 cut(s) 908
BseGI GGATG 8 cut(s) 154, 258, 495, 528, 700, 736, 747, 1174
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 7 cut(s) 289, 323, 628, 660, 661, 662, 914
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 3 cut(s) 512, 929, 1077
BseRI GAGGAG 2 cut(s) 647, 1019
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 4 cut(s) 91, 264, 871, 883
BseYI CCCAGC 4 cut(s) 344, 623, 765, 809
BsgI GTGCAG 4 cut(s) 18, 263, 890, 1080
Bsh1236I CGCG 2 cut(s) 963, 999
BshFI GGCC 2 cut(s) 808, 914
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 2 cut(s) 597, 639
BsiSI CCGG 1 cut(s) 915
BslFI GGGAC 3 cut(s) 137, 487, 1076
BslI CCNNNNNNNGG 7 cut(s) 289, 323, 628, 660, 661, 662, 914
BsmAI GTCTC 6 cut(s) 224, 239, 257, 566, 953, 1133
BsmFI GGGAC 3 cut(s) 137, 487, 1076
BsnI GGCC 2 cut(s) 808, 914
Bsp1286I GDGCHC 5 cut(s) 57, 410, 597, 639, 1043
Bsp143I GATC 6 cut(s) 71, 119, 700, 957, 1066, 1075
BspANI GGCC 2 cut(s) 808, 914
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 2 cut(s) 963, 999
BspLI GGNNCC 2 cut(s) 328, 702
BspMAI CTGCAG 1 cut(s) 861
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 6 cut(s) 79, 695, 708, 952, 1061, 1083
BspT107I GGYRCC 1 cut(s) 326
BsrBI CCGCTC 1 cut(s) 902
BsrFI RCCGGY 1 cut(s) 914
BsrI ACTGG 3 cut(s) 512, 929, 1077
BssAI RCCGGY 1 cut(s) 914
BssECI CCNNGG 1 cut(s) 908
BssMI GATC 6 cut(s) 71, 119, 700, 957, 1066, 1075
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 3 cut(s) 242, 882, 1036
Bst2BI CACGAG 3 cut(s) 242, 882, 1036
Bst2UI CCWGG 2 cut(s) 290, 819
Bst4CI ACNGT 5 cut(s) 161, 447, 478, 592, 995
Bst6I CTCTTC 2 cut(s) 16, 797
BstACI GRCGYC 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 925
BstC8I GCNNGC 6 cut(s) 258, 815, 831, 857, 916, 1155
BstDEI CTNAG 4 cut(s) 144, 261, 720, 782
BstDSI CCRYGG 1 cut(s) 908
BstF5I GGATG 8 cut(s) 154, 258, 495, 528, 700, 736, 747, 1174
BstFNI CGCG 2 cut(s) 963, 999
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 3 cut(s) 329, 965, 1001
BstKTI GATC 6 cut(s) 74, 122, 703, 960, 1069, 1078
BstMAI GTCTC 6 cut(s) 224, 239, 257, 566, 953, 1133
BstMBI GATC 6 cut(s) 71, 119, 700, 957, 1066, 1075
BstMWI GCNNNNNNNGC 4 cut(s) 32, 266, 814, 868
BstNI CCWGG 2 cut(s) 290, 819
BstNSI RCATGY 2 cut(s) 219, 260
BstSCI CCNGG 2 cut(s) 288, 817
BstSFI CTRYAG 1 cut(s) 857
BstSLI GKGCMC 1 cut(s) 410
BstUI CGCG 2 cut(s) 963, 999
BstV1I GCAGC 4 cut(s) 91, 264, 871, 883
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 3 cut(s) 119, 700, 1075
BstXI CCANNNNNNTGG 1 cut(s) 198
BstYI RGATCY 3 cut(s) 119, 700, 1075
BsuRI GGCC 2 cut(s) 808, 914
BtgI CCRYGG 1 cut(s) 908
BtsCI GGATG 8 cut(s) 154, 258, 495, 528, 700, 736, 747, 1174
BtsIMutI CAGTG 3 cut(s) 71, 588, 1070
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 6 cut(s) 258, 815, 831, 857, 916, 1155
CfoI GCGC 3 cut(s) 329, 965, 1001
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 2 cut(s) 807, 912
CseI GACGC 1 cut(s) 835
Csp6I GTAC 1 cut(s) 926
CviAII CATG 6 cut(s) 75, 178, 216, 249, 257, 428
CviQI GTAC 1 cut(s) 926
DdeI CTNAG 4 cut(s) 144, 261, 720, 782
DinI GGCGCC 1 cut(s) 328
DpnI GATC 6 cut(s) 73, 121, 702, 959, 1068, 1077
DpnII GATC 6 cut(s) 71, 119, 700, 957, 1066, 1075
Eam1104I CTCTTC 2 cut(s) 16, 797
EarI CTCTTC 2 cut(s) 16, 797
EciI GGCGGA 2 cut(s) 894, 927
Ecl136II GAGCTC 1 cut(s) 637
Eco24I GRGCYC 3 cut(s) 57, 639, 1043
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 403
EcoICRI GAGCTC 1 cut(s) 637
EcoRI GAATTC 1 cut(s) 669
EcoRII CCWGG 2 cut(s) 288, 817
EcoT22I ATGCAT 1 cut(s) 258
EcoT38I GRGCYC 3 cut(s) 57, 639, 1043
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
FaeI CATG 6 cut(s) 78, 181, 219, 252, 260, 431
FaqI GGGAC 3 cut(s) 137, 487, 1076
FatI CATG 6 cut(s) 74, 177, 215, 248, 256, 427
FauI CCCGC 3 cut(s) 620, 720, 730
Fnu4HI GCNGC 7 cut(s) 27, 80, 278, 860, 872, 900, 989
FokI GGATG 8 cut(s) 161, 265, 502, 535, 707, 743, 754, 1161
FriOI GRGCYC 3 cut(s) 57, 639, 1043
Fsp4HI GCNGC 7 cut(s) 27, 80, 278, 860, 872, 900, 989
FspBI CTAG 2 cut(s) 123, 753
GlaI GCGC 3 cut(s) 328, 964, 1000
GluI GCNGC 7 cut(s) 27, 80, 278, 860, 872, 900, 989
GsaI CCCAGC 4 cut(s) 348, 627, 769, 813
GsuI CTGGAG 1 cut(s) 995
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 2 cut(s) 808, 914
HapII CCGG 1 cut(s) 915
HgaI GACGC 1 cut(s) 835
HhaI GCGC 3 cut(s) 329, 965, 1001
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 6 cut(s) 78, 181, 219, 252, 260, 431
Hin6I GCGC 3 cut(s) 327, 963, 999
HinP1I GCGC 3 cut(s) 327, 963, 999
HinfI GANTC 2 cut(s) 946, 974
HpaII CCGG 1 cut(s) 915
HphI GGTGA 5 cut(s) 445, 463, 478, 643, 943
Hpy166II GTNNAC 2 cut(s) 207, 750
Hpy188I TCNGA 2 cut(s) 16, 422
Hpy188III TCNNGA 6 cut(s) 355, 520, 532, 674, 1079, 1185
Hpy8I GTNNAC 2 cut(s) 207, 750
Hpy99I CGWCG 1 cut(s) 999
HpyAV CCTTC 2 cut(s) 11, 780
HpyCH4III ACNGT 5 cut(s) 161, 447, 478, 592, 995
HpyCH4IV ACGT 2 cut(s) 924, 1084
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 266, 814, 868
HpyF3I CTNAG 4 cut(s) 144, 261, 720, 782
HpySE526I ACGT 2 cut(s) 924, 1084
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 6 cut(s) 78, 181, 219, 252, 260, 431
HspAI GCGC 3 cut(s) 327, 963, 999
KasI GGCGCC 1 cut(s) 326
KroI GCCGGC 1 cut(s) 914
KroNI GCCGGC 1 cut(s) 916
Kzo9I GATC 6 cut(s) 71, 119, 700, 957, 1066, 1075
LmnI GCTCC 6 cut(s) 240, 634, 642, 907, 1006, 1065
Lsp1109I GCAGC 4 cut(s) 91, 264, 871, 883
LweI GCATC 4 cut(s) 149, 243, 480, 513
MaeI CTAG 2 cut(s) 123, 753
MaeII ACGT 2 cut(s) 924, 1084
MalI GATC 6 cut(s) 73, 121, 702, 959, 1068, 1077
MbiI CCGCTC 1 cut(s) 902
MboI GATC 6 cut(s) 71, 119, 700, 957, 1066, 1075
MboII GAAGA 7 cut(s) 3, 196, 298, 305, 409, 814, 1039
MflI RGATCY 3 cut(s) 119, 700, 1075
MhlI GDGCHC 5 cut(s) 57, 410, 597, 639, 1043
MluCI AATT 4 cut(s) 387, 515, 669, 773
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 2 cut(s) 955, 983
MmeI TCCRAC 2 cut(s) 467, 549
Mph1103I ATGCAT 1 cut(s) 258
MroNI GCCGGC 1 cut(s) 914
MseI TTAA 1 cut(s) 230
MslI CAYNNNNRTG 2 cut(s) 40, 214
MspA1I CMGCKG 3 cut(s) 277, 348, 627
MspI CCGG 1 cut(s) 915
MspR9I CCNGG 2 cut(s) 290, 819
MvaI CCWGG 2 cut(s) 290, 819
MvnI CGCG 2 cut(s) 963, 999
MwoI GCNNNNNNNGC 4 cut(s) 32, 266, 814, 868
NaeI GCCGGC 1 cut(s) 916
NarI GGCGCC 1 cut(s) 327
NdeII GATC 6 cut(s) 71, 119, 700, 957, 1066, 1075
NgoMIV GCCGGC 1 cut(s) 914
NlaIII CATG 6 cut(s) 78, 181, 219, 252, 260, 431
NlaIV GGNNCC 2 cut(s) 328, 702
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 2 cut(s) 219, 260
PaeI GCATGC 1 cut(s) 260
PaqCI CACCTGC 1 cut(s) 454
PdiI GCCGGC 1 cut(s) 916
PflMI CCANNNNNTGG 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 7 cut(s) 28, 81, 279, 861, 873, 901, 990
PleI GAGTC 2 cut(s) 954, 982
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 2 cut(s) 954, 982
Ppu21I YACGTR 1 cut(s) 925
Psp124BI GAGCTC 1 cut(s) 639
Psp6I CCWGG 2 cut(s) 288, 817
PspFI CCCAGC 4 cut(s) 344, 623, 765, 809
PspGI CCWGG 2 cut(s) 288, 817
PspN4I GGNNCC 2 cut(s) 328, 702
PspPI GGNCC 2 cut(s) 807, 912
PsrI GAACNNNNNNTAC 2 cut(s) 918, 950
PstI CTGCAG 1 cut(s) 861
PsuI RGATCY 3 cut(s) 119, 700, 1075
PvuII CAGCTG 2 cut(s) 277, 348
RsaI GTAC 1 cut(s) 927
RsaNI GTAC 1 cut(s) 926
RseI CAYNNNNRTG 2 cut(s) 40, 214
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 7 cut(s) 27, 80, 278, 860, 872, 900, 989
Sau3AI GATC 6 cut(s) 71, 119, 700, 957, 1066, 1075
Sau96I GGNCC 2 cut(s) 807, 912
SchI GAGTC 2 cut(s) 955, 983
ScrFI CCNGG 2 cut(s) 290, 819
SduI GDGCHC 5 cut(s) 57, 410, 597, 639, 1043
SetI ASST 9 cut(s) 40, 279, 350, 468, 558, 639, 927, 1087, 1140
SfaNI GCATC 4 cut(s) 149, 243, 480, 513
SfcI CTRYAG 1 cut(s) 857
SfoI GGCGCC 1 cut(s) 328
SmiMI CAYNNNNRTG 2 cut(s) 40, 214
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
SphI GCATGC 1 cut(s) 260
Sse9I AATT 4 cut(s) 387, 515, 669, 773
SspDI GGCGCC 1 cut(s) 326
SspMI CTAG 2 cut(s) 123, 753
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 2 cut(s) 288, 817
TaaI ACNGT 5 cut(s) 161, 447, 478, 592, 995
TaiI ACGT 2 cut(s) 927, 1087
TasI AATT 4 cut(s) 387, 515, 669, 773
TauI GCSGC 3 cut(s) 29, 902, 991
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 3 cut(s) 71, 595, 1077
TseI GCWGC 4 cut(s) 79, 277, 859, 871
TspDTI ATGAA 2 cut(s) 197, 416
TspRI CASTG 3 cut(s) 71, 595, 1077
Van91I CCANNNNNTGG 1 cut(s) 323
XapI RAATTY 2 cut(s) 515, 669
XceI RCATGY 2 cut(s) 219, 260
XcmI CCANNNNNNNNNTGG 2 cut(s) 198, 246
XspI CTAG 2 cut(s) 123, 753
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.