Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Forward (+)

36084371 .. 36092855

Gene Structure 8485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTTCGTTCATTCATTCATTGGTGTATTGGCATATCGCGTAACATTCATTCATTCATTTATTGGCATATCGCGTAACATTCGTTCATTCATTCATTGGATTGCACCTGGCACCGCAAGGGTTCACGAGGGACAGCATTGTGTTGTGTCGTCGGAATCGGCCCGCCAAATGTTTCGGTGGTCTCGGGAGGAGTCCGGTCCACCTGAACACAAAGTTGTATCGGTTTGTAGATATCGCTATCGATCTCTCTTATCGAAAACGAGACGAAGGTCAAAGGGAAGACCGGTTGTGCCGGCCTTCAACGCTCCGATGTCTAAGTTAGTATTGAGTAAGATAATGATAATGGAAAGCGATCATAAACGATTAACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

14.37

Weight (kDa)

11.29

Isoelectric Point (pI)

67.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccII	CGCG	2 cut(s)	39, 73
AciI	CCGC	2 cut(s)	114, 163
AgeI	ACCGGT	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	106
Alw26I	GTCTC	2 cut(s)	186, 256
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	2 cut(s)	159, 294
AsiGI	ACCGGT	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	160, 197
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	186, 256
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	160, 197
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	108
BoxI	GACNNNNGTC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	286
Bsa29I	ATCGAT	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	186
BsaWI	WCCGGW	2 cut(s)	194, 283
Bse118I	RCCGGY	2 cut(s)	283, 292
BseBI	CCWGG	1 cut(s)	108
BseCI	ATCGAT	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	203
Bsh1236I	CGCG	2 cut(s)	39, 73
BshFI	GGCC	2 cut(s)	161, 296
BshNI	GGYRCC	1 cut(s)	110
BshTI	ACCGGT	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	195, 284, 293
BslFI	GGGAC	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	186, 256
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	161, 296
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	242, 352
BspACI	CCGC	2 cut(s)	114, 163
BspANI	GGCC	2 cut(s)	161, 296
BspDI	ATCGAT	1 cut(s)	241
BspFNI	CGCG	2 cut(s)	39, 73
BspLI	GGNNCC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	186
BsrFI	RCCGGY	2 cut(s)	283, 292
BssAI	RCCGGY	2 cut(s)	283, 292
BssMI	GATC	2 cut(s)	242, 352
BssSI	CACGAG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	163, 294
BstDEI	CTNAG	1 cut(s)	315
BstFNI	CGCG	2 cut(s)	39, 73
BstKTI	GATC	2 cut(s)	245, 355
BstMAI	GTCTC	2 cut(s)	186, 256
BstMBI	GATC	2 cut(s)	242, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	108
BstPAI	GACNNNNGTC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	106
BstUI	CGCG	2 cut(s)	39, 73
BstV2I	GAAGAC	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	161, 296
BsuTUI	ATCGAT	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	163, 294
Cfr10I	RCCGGY	2 cut(s)	283, 292
Cfr13I	GGNCC	2 cut(s)	160, 197
ClaI	ATCGAT	1 cut(s)	241
CspAI	ACCGGT	1 cut(s)	283
CviJI	RGCY	2 cut(s)	161, 296
CviKI_1	RGCY	2 cut(s)	161, 296
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	244, 354
DpnII	GATC	2 cut(s)	242, 352
Eco31I	GGTCTC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	256
FaiI	YATR	3 cut(s)	34, 68, 357
FaqI	GGGAC	1 cut(s)	144
FauI	CCCGC	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	161, 296
HapII	CCGG	3 cut(s)	195, 284, 293
HinfI	GANTC	2 cut(s)	155, 191
HpaII	CCGG	3 cut(s)	195, 284, 293
Hpy166II	GTNNAC	2 cut(s)	124, 200
Hpy188I	TCNGA	2 cut(s)	154, 309
Hpy188III	TCNNGA	2 cut(s)	125, 185
Hpy8I	GTNNAC	2 cut(s)	124, 200
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	261, 307
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	315
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	242, 352
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	6 cut(s)	93, 120, 208, 216, 297, 306
MaeIII	GTNAC	2 cut(s)	40, 74
MalI	GATC	2 cut(s)	244, 354
MboI	GATC	2 cut(s)	242, 352
MboII	GAAGA	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	121, 181
MroNI	GCCGGC	1 cut(s)	292
MseI	TTAA	1 cut(s)	365
MspI	CCGG	3 cut(s)	195, 284, 293
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	39, 73
MwoI	GCNNNNNNNGC	1 cut(s)	302
NaeI	GCCGGC	1 cut(s)	294
NdeII	GATC	2 cut(s)	242, 352
NgoMIV	GCCGGC	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	155
PinAI	ACCGGT	1 cut(s)	283
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	2 cut(s)	160, 197
PsrI	GAACNNNNNNTAC	2 cut(s)	67, 99
SaqAI	TTAA	1 cut(s)	365
Sau3AI	GATC	2 cut(s)	242, 352
Sau96I	GGNCC	2 cut(s)	160, 197
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	3 cut(s)	109, 205, 272
SinI	GGWCC	1 cut(s)	197
SsiI	CCGC	2 cut(s)	114, 163
StyD4I	CCNGG	1 cut(s)	106
TaqI	TCGA	2 cut(s)	241, 254
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TspDTI	ATGAA	7 cut(s)	7, 37, 41, 45, 75, 79, 83
VpaK11BI	GGWCC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.