Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Reverse (-)

10186775 .. 10193491

Gene Structure 6717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGTGGAAGCTGAAGATTGCGGAAGGAGGACCCTGGCTGAGAACACTAGACAATCACGTGGGTCGACAACACTGGGAGTTTGATCCAGATGAAGGAACACCAGAAGAGCGAGCACAAGTAGAAAGAGTTCGTGAGGAGTTCACAAGAAACCGCTTTCGGATCAAACAAAGTGCTGATCTTTTGATGAGAATGCAGCTTACAAAAGATAACCCTAGTGGACCAATTCCGGCAGCAATTAGAGTGAAGGGAATCGAGGATATAACAGAAAAGGCAGTGACAGTAACAATAAGAAGGTCTCTCAGCTTCTTTTCCTCCCTTCAGGCCCATGATGGCCATTGGCCTGCTGAATCTGCCGGTCCCTTGTTCTTCATTCAACCTTTGGTTATAGCGTTGTATGTCACTGGAGCACTGTGTGCGGTTCTAGGACCTGAACACCAGAAGGAAATAATTCGCTACATCTACAATCATCAGAATGAAGATGGAGGTTGGGGACTACACATAGAAGGTCACAGCACCATGTTCGGGTCAGCGTTAAGCTACATTGCATTGAGGCTGCTTGGAGAGGGTCCTGATGATGGGGAAGGCATGGCCGTGGCAAGAGCCAGGAAATGGATTCTGGATCATGGCGGTGCGGTTGGAATTCCATCTTGGGGAAAGTTTTGGCTTACGGTACTTGGCGTATATGAGTGGTCAGGGTGCAACCCTTTGCCCCCCGAGTTCTGGCTTCTACCGAACATCTTTCCTATTCATCCAGGGAAGATGTTATGCTATTGTCGGTTGGTGTACATGCCTATGTCATACTTATATGGGAAGAGGTTTGTTGGCCAAATCACCGGATTGGTTAAATCATTGAGACGAGAGCTCTACAATGAGCCATACCATCAAATTAACTGGTCTAAAGCCAGAAACACTGTTGCAAAGGAAGATCTGTATTATCCACACCCCCTAGTGCAAGATATGCTGTGGGGATTTCTTCACCATGTTGCTGAACCAGTTCTGGCTCGTTGGCCCTTTTCTATCCTGAGAGAGAAGGCCCTTAAAGTAGCAATCGAGCACGTACACTATGAAGACGAGAACAGCAGATATCTTTGCATTGGTAGTGTCGAAAAGGTGTTATGTTTGATAGCTTGTTGGGTCGAAGATCCAAATTCGGAAGCATACAAGCTTCACCTGGCCAGAATACCAGATTACTTTTGGGTTGCTGAAGACGGCTTGAAATTTCAGAGTTTCGGTAGTCAAATGTGGGACGCTGCCTTTTCCATTCAAGCAATACTCTCTTGTGACCTAAATGAAGAGTATGGGGCTACACTTCGAAAAGCGCACGACTTTGTGAAGGCTTCACAGATTCGAGAAAACCCTGGTGGCGACTACGCAGCAATGTACCGACACATATCTAAAGGTGCATGGACATTCTCAATACAGGACCATGGTTGGCAAGTCTCCGACTGCACTTCAGAAGGACTAAAGGTGGCACTCTTGCTCTCACAAATGCCAGAGAAACTAGTTGGAGAAGGAATGGAAGCAGATTGTTTTTATGACGCTGTGAATGTCATTCTTTCTTTACAAAGCATCAGTGGTGGTTTCCCTGCTTGGGAGCCTCAAAGAGCATTCAGTTGGTTGGAGAAATTCAACCCCACAGAGTTCTTCGAAGATACTCTTATTGAAAGAGAGTACGTAGAATGCACTTCATCAGCAGTTCAAGGTCTAGCACTCTTTAGAAGATTTTATCCCAACCACCGAAGACAAGAAATAGACAGTTGCATATCAAAAGCAATTAGTTACATCGAAGAAGCACAAAACCCTGATGGTTCATGGTACGGATGCTGGGGTATTTGCTACACATATGGTACCTGGTTTGGTGTAGGGGCATTAGCAGTCTGTGGGAAAAACTACCAGAATAGTCTCATATTGCGCAAAGCCTGTGCATTTTTGCTATCCAAGCAGCTACCCAATGGTGGATGGGGGGAGAGTTACCTTTCCAGTCAAAATAAGGTTTATACAAATCTAGAAGGCAACCGCGCTAATCTGGTGCACACTGCTTGGGCTTTATTGTCCCTCATGGATGCCGGGCAGGGTGATGTAGATCCAACTCCCATTCATCGTGGAATAATGGTGCTGATCAATTCGCAAATGGAGGATGGTGACTTCCCTCAACAGGAAATCACTGGAGTATTTTTCAGAAATTGCACACTAAACTACTCCTCATATCGTAACATCTTCCCAAAATGGGCTCTCGGGGAGTATCGCCGACGCCTTCTAATGTATACATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042299 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

758

Amino Acids

86.27

Weight (kDa)

6.0

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	96 - 359	2.4e-40	Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C	PF13243	412 - 750	3.9e-52	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1913
Acc65I	GGTACC	1 cut(s)	1847
AccB1I	GGYRCC	1 cut(s)	1847
AccB7I	CCANNNNNTGG	1 cut(s)	609
AccI	GTMKAC	2 cut(s)	64, 2264
AccII	CGCG	1 cut(s)	2019
AciI	CCGC	6 cut(s)	20, 151, 416, 627, 632, 2017
AclWI	GGATC	5 cut(s)	77, 167, 627, 1136, 2078
AcoI	YGGCCR	4 cut(s)	331, 588, 823, 1173
AcsI	RAATTY	4 cut(s)	639, 1147, 1217, 1625
AcuI	CTGAAG	4 cut(s)	32, 302, 1224, 1437
AcvI	CACGTG	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	2251
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	7 cut(s)	672, 785, 1059, 1382, 1673, 1817, 1849
AgsI	TTSAA	6 cut(s)	374, 1216, 1265, 1630, 1664, 1700
AhlI	ACTAGT	1 cut(s)	1501
AjnI	CCWGG	6 cut(s)	32, 602, 751, 1170, 1357, 1850
AjuI	GAANNNNNNNTTGG	2 cut(s)	631, 663
AluBI	AGCT	8 cut(s)	10, 196, 303, 537, 862, 1127, 1165, 1945
AluI	AGCT	8 cut(s)	10, 196, 303, 537, 862, 1127, 1165, 1945
Alw21I	GWGCWC	5 cut(s)	115, 409, 864, 1056, 2034
Alw26I	GTCTC	4 cut(s)	300, 847, 1444, 1907
Alw44I	GTGCAC	1 cut(s)	2030
AlwI	GGATC	5 cut(s)	77, 167, 627, 1136, 2078
Ama87I	CYCGRG	2 cut(s)	713, 2234
AoxI	GGCC	8 cut(s)	321, 331, 338, 588, 823, 1007, 1032, 1173
ApaLI	GTGCAC	1 cut(s)	2030
ApeKI	GCWGC	6 cut(s)	193, 230, 553, 1250, 1373, 1942
ApoI	RAATTY	4 cut(s)	639, 1147, 1217, 1625
Asp700I	GAANNNNTTC	3 cut(s)	126, 447, 993
Asp718I	GGTACC	1 cut(s)	1847
AspLEI	GCGC	3 cut(s)	1321, 1914, 2021
AspS9I	GGNCC	9 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033, 1423
AsuC2I	CCSGG	1 cut(s)	2068
AsuHPI	GGTGA	5 cut(s)	823, 968, 1160, 2087, 2153
AsuII	TTCGAA	2 cut(s)	1312, 1647
AvaI	CYCGRG	2 cut(s)	713, 2234
AvaII	GGWCC	6 cut(s)	29, 218, 356, 425, 566, 1423
BaeGI	GKGCMC	1 cut(s)	2034
BalI	TGGCCA	3 cut(s)	333, 825, 1175
BanI	GGYRCC	1 cut(s)	1847
BanII	GRGCYC	2 cut(s)	864, 2233
BbrPI	CACGTG	1 cut(s)	58
BbsI	GAAGAC	3 cut(s)	1074, 1212, 1747
Bbv12I	GWGCWC	5 cut(s)	115, 409, 864, 1056, 2034
BbvI	GCAGC	6 cut(s)	205, 242, 540, 1237, 1385, 1954
BccI	CCATC	8 cut(s)	323, 473, 569, 652, 888, 1799, 1953, 2132
BceAI	ACGGC	2 cut(s)	575, 1225
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BciT130I	CCWGG	6 cut(s)	34, 604, 753, 1172, 1359, 1852
BclI	TGATCA	1 cut(s)	2118
BcnI	CCSGG	1 cut(s)	2068
BcoDI	GTCTC	4 cut(s)	300, 847, 1444, 1907
BcuI	ACTAGT	1 cut(s)	1501
BfaI	CTAG	7 cut(s)	47, 213, 422, 947, 1502, 1706, 2006
BglII	AGATCT	1 cut(s)	925
BisI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
BlsI	GCNGC	6 cut(s)	195, 232, 555, 1252, 1375, 1944
Bme1390I	CCNGG	7 cut(s)	34, 604, 753, 1172, 1359, 1852, 2068
Bme18I	GGWCC	6 cut(s)	29, 218, 356, 425, 566, 1423
BmeT110I	CYCGRG	2 cut(s)	713, 2234
BmgT120I	GGNCC	9 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033, 1423
BmiI	GGNNCC	5 cut(s)	31, 358, 567, 1596, 1849
BmrFI	CCNGG	7 cut(s)	34, 604, 753, 1172, 1359, 1852, 2068
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	3 cut(s)	1578, 1811, 2053
BmuI	ACTGGG	1 cut(s)	82
BpiI	GAAGAC	3 cut(s)	1074, 1212, 1747
BpmI	CTGGAG	2 cut(s)	423, 2187
Bpu14I	TTCGAA	2 cut(s)	1312, 1647
BpuMI	CCSGG	1 cut(s)	2068
BsaAI	YACGTR	3 cut(s)	58, 1057, 1675
BsaBI	GATNNNNATC	1 cut(s)	2082
BsaHI	GRCGYC	1 cut(s)	2251
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	5 cut(s)	32, 591, 752, 1357, 1426
BsaWI	WCCGGW	1 cut(s)	833
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	6 cut(s)	77, 406, 896, 992, 1980, 2170
Bse3DI	GCAATG	2 cut(s)	540, 1383
Bse8I	GATNNNNATC	1 cut(s)	2082
BseBI	CCWGG	6 cut(s)	34, 604, 753, 1172, 1359, 1852
BseDI	CCNNGG	5 cut(s)	32, 591, 752, 1357, 1426
BseGI	GGATG	5 cut(s)	748, 1826, 1964, 2068, 2143
BseJI	GATNNNNATC	1 cut(s)	2082
BseMI	GCAATG	2 cut(s)	540, 1383
BseMII	CTCAG	3 cut(s)	29, 313, 1013
BseNI	ACTGG	6 cut(s)	77, 406, 896, 992, 1980, 2170
BseRI	GAGGAG	2 cut(s)	149, 2191
BseSI	GKGCMC	1 cut(s)	2034
BseXI	GCAGC	6 cut(s)	205, 242, 540, 1237, 1385, 1954
BseYI	CCCAGC	1 cut(s)	1824
BsgI	GTGCAG	1 cut(s)	1432
Bsh1236I	CGCG	1 cut(s)	2019
BshFI	GGCC	8 cut(s)	323, 333, 340, 590, 825, 1009, 1034, 1175
BshNI	GGYRCC	1 cut(s)	1847
BsiHKAI	GWGCWC	5 cut(s)	115, 409, 864, 1056, 2034
BsiHKCI	CYCGRG	2 cut(s)	713, 2234
BsiSI	CCGG	4 cut(s)	227, 354, 834, 2067
BslFI	GGGAC	4 cut(s)	342, 504, 1259, 2038
BsmAI	GTCTC	4 cut(s)	300, 847, 1444, 1907
BsmBI	CGTCTC	1 cut(s)	847
BsmFI	GGGAC	4 cut(s)	342, 504, 1259, 2038
BsmI	GAATGC	3 cut(s)	195, 1607, 1685
BsnI	GGCC	8 cut(s)	323, 333, 340, 590, 825, 1009, 1034, 1175
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	2 cut(s)	713, 2234
Bsp119I	TTCGAA	2 cut(s)	1312, 1647
Bsp1286I	GDGCHC	6 cut(s)	115, 409, 864, 1056, 2034, 2233
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	8 cut(s)	82, 159, 175, 619, 925, 1141, 2083, 2118
Bsp19I	CCATGG	1 cut(s)	1426
BspACI	CCGC	6 cut(s)	20, 151, 416, 627, 632, 2017
BspANI	GGCC	8 cut(s)	323, 333, 340, 590, 825, 1009, 1034, 1175
BspCNI	CTCAG	3 cut(s)	30, 312, 1014
BspFNI	CGCG	1 cut(s)	2019
BspLI	GGNNCC	5 cut(s)	31, 358, 567, 1596, 1849
BspPI	GGATC	5 cut(s)	77, 167, 627, 1136, 2078
BspQI	GCTCTTC	1 cut(s)	99
BspT104I	TTCGAA	2 cut(s)	1312, 1647
BspT107I	GGYRCC	1 cut(s)	1847
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	2 cut(s)	540, 1383
BsrFI	RCCGGY	1 cut(s)	353
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	6 cut(s)	77, 406, 896, 992, 1980, 2170
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	5 cut(s)	32, 591, 752, 1357, 1426
BssMI	GATC	8 cut(s)	82, 159, 175, 619, 925, 1141, 2083, 2118
BssNAI	GTATAC	1 cut(s)	2265
BssNI	GRCGYC	1 cut(s)	2251
BssT1I	CCWWGG	1 cut(s)	1426
Bst1107I	GTATAC	1 cut(s)	2265
Bst2UI	CCWGG	6 cut(s)	34, 604, 753, 1172, 1359, 1852
Bst4CI	ACNGT	5 cut(s)	280, 411, 670, 913, 1757
Bst6I	CTCTTC	3 cut(s)	99, 806, 1287
BstACI	GRCGYC	1 cut(s)	2251
BstAPI	GCANNNNNTGC	2 cut(s)	413, 958
BstAUI	TGTACA	1 cut(s)	783
BstBAI	YACGTR	3 cut(s)	58, 1057, 1675
BstBI	TTCGAA	2 cut(s)	1312, 1647
BstC8I	GCNNGC	2 cut(s)	111, 342
BstDEI	CTNAG	3 cut(s)	38, 299, 1022
BstDSI	CCRYGG	2 cut(s)	591, 1426
BstF5I	GGATG	5 cut(s)	748, 1826, 1964, 2068, 2143
BstFNI	CGCG	1 cut(s)	2019
BstHHI	GCGC	3 cut(s)	1321, 1914, 2021
BstKTI	GATC	8 cut(s)	85, 162, 178, 622, 928, 1144, 2086, 2121
BstMAI	GTCTC	4 cut(s)	300, 847, 1444, 1907
BstMBI	GATC	8 cut(s)	82, 159, 175, 619, 925, 1141, 2083, 2118
BstMWI	GCNNNNNNNGC	4 cut(s)	350, 413, 958, 1939
BstNI	CCWGG	6 cut(s)	34, 604, 753, 1172, 1359, 1852
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	7 cut(s)	32, 602, 751, 1170, 1357, 1850, 2066
BstSLI	GKGCMC	1 cut(s)	2034
BstSNI	TACGTA	1 cut(s)	1675
BstUI	CGCG	1 cut(s)	2019
BstV1I	GCAGC	6 cut(s)	205, 242, 540, 1237, 1385, 1954
BstV2I	GAAGAC	3 cut(s)	1074, 1212, 1747
BstX2I	RGATCY	3 cut(s)	925, 1141, 2083
BstYI	RGATCY	3 cut(s)	925, 1141, 2083
BstZ17I	GTATAC	1 cut(s)	2265
BsuRI	GGCC	8 cut(s)	323, 333, 340, 590, 825, 1009, 1034, 1175
BtgI	CCRYGG	2 cut(s)	591, 1426
BtsCI	GGATG	5 cut(s)	748, 1826, 1964, 2068, 2143
BtsI	GCAGTG	2 cut(s)	279, 2034
BtsIMutI	CAGTG	8 cut(s)	70, 279, 399, 407, 909, 1579, 2034, 2163
Cac8I	GCNNGC	2 cut(s)	111, 342
CfoI	GCGC	3 cut(s)	1321, 1914, 2021
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	9 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033, 1423
CseI	GACGC	3 cut(s)	1256, 1547, 2259
CsiI	ACCWGGT	1 cut(s)	1850
Csp6I	GTAC	7 cut(s)	671, 784, 1058, 1381, 1672, 1816, 1848
CviQI	GTAC	7 cut(s)	671, 784, 1058, 1381, 1672, 1816, 1848
DdeI	CTNAG	3 cut(s)	38, 299, 1022
DpnI	GATC	8 cut(s)	84, 161, 177, 621, 927, 1143, 2085, 2120
DpnII	GATC	8 cut(s)	82, 159, 175, 619, 925, 1141, 2083, 2118
DraIII	CACNNNGTG	1 cut(s)	413
EaeI	YGGCCR	4 cut(s)	331, 588, 823, 1173
Eam1104I	CTCTTC	3 cut(s)	99, 806, 1287
EarI	CTCTTC	3 cut(s)	99, 806, 1287
Ecl136II	GAGCTC	1 cut(s)	862
Eco105I	TACGTA	1 cut(s)	1675
Eco130I	CCWWGG	1 cut(s)	1426
Eco24I	GRGCYC	2 cut(s)	864, 2233
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	1085
Eco47I	GGWCC	6 cut(s)	29, 218, 356, 425, 566, 1423
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	4 cut(s)	32, 302, 1224, 1437
Eco72I	CACGTG	1 cut(s)	58
Eco88I	CYCGRG	2 cut(s)	713, 2234
EcoICRI	GAGCTC	1 cut(s)	862
EcoO109I	RGGNCCY	4 cut(s)	29, 425, 566, 1033
EcoRI	GAATTC	1 cut(s)	639
EcoRII	CCWGG	6 cut(s)	32, 602, 751, 1170, 1357, 1850
EcoRV	GATATC	1 cut(s)	1085
EcoT14I	CCWWGG	1 cut(s)	1426
EcoT38I	GRGCYC	2 cut(s)	864, 2233
ErhI	CCWWGG	1 cut(s)	1426
Esp3I	CGTCTC	1 cut(s)	847
FalI	AAGNNNNNCTT	2 cut(s)	1641, 1673
FaqI	GGGAC	4 cut(s)	342, 504, 1259, 2038
FauNDI	CATATG	1 cut(s)	1843
FbaI	TGATCA	1 cut(s)	2118
FblI	GTMKAC	2 cut(s)	64, 2264
Fnu4HI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
FokI	GGATG	5 cut(s)	735, 1833, 1971, 2075, 2150
FriOI	GRGCYC	2 cut(s)	864, 2233
Fsp4HI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
FspBI	CTAG	7 cut(s)	47, 213, 422, 947, 1502, 1706, 2006
FspI	TGCGCA	1 cut(s)	1913
GlaI	GCGC	3 cut(s)	1320, 1913, 2020
GluI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
GsaI	CCCAGC	1 cut(s)	1828
GsuI	CTGGAG	2 cut(s)	423, 2187
HaeIII	GGCC	8 cut(s)	323, 333, 340, 590, 825, 1009, 1034, 1175
HapII	CCGG	4 cut(s)	227, 354, 834, 2067
HgaI	GACGC	3 cut(s)	1256, 1547, 2259
HhaI	GCGC	3 cut(s)	1321, 1914, 2021
Hin1I	GRCGYC	1 cut(s)	2251
Hin6I	GCGC	3 cut(s)	1319, 1912, 2019
HinP1I	GCGC	3 cut(s)	1319, 1912, 2019
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	1163
HinfI	GANTC	4 cut(s)	249, 347, 613, 1345
HpaII	CCGG	4 cut(s)	227, 354, 834, 2067
HphI	GGTGA	5 cut(s)	823, 968, 1160, 2087, 2153
Hpy166II	GTNNAC	7 cut(s)	65, 141, 218, 784, 1060, 2032, 2265
Hpy188I	TCNGA	7 cut(s)	159, 471, 1153, 1224, 1444, 1456, 2180
Hpy188III	TCNNGA	8 cut(s)	86, 131, 569, 617, 1021, 1349, 2006, 2271
Hpy8I	GTNNAC	7 cut(s)	65, 141, 218, 784, 1060, 2032, 2265
Hpy99I	CGWCG	1 cut(s)	2253
HpyCH4III	ACNGT	5 cut(s)	280, 411, 670, 913, 1757
HpyCH4IV	ACGT	3 cut(s)	57, 1056, 1674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	350, 413, 958, 1939
HpyF3I	CTNAG	3 cut(s)	38, 299, 1022
HpySE526I	ACGT	3 cut(s)	57, 1056, 1674
Hsp92I	GRCGYC	1 cut(s)	2251
HspAI	GCGC	3 cut(s)	1319, 1912, 2019
KpnI	GGTACC	1 cut(s)	1851
Ksp22I	TGATCA	1 cut(s)	2118
Kzo9I	GATC	8 cut(s)	82, 159, 175, 619, 925, 1141, 2083, 2118
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	404, 1594
Lsp1109I	GCAGC	6 cut(s)	205, 242, 540, 1237, 1385, 1954
LweI	GCATC	3 cut(s)	1578, 1811, 2053
MabI	ACCWGGT	1 cut(s)	1850
MaeI	CTAG	7 cut(s)	47, 213, 422, 947, 1502, 1706, 2006
MaeII	ACGT	3 cut(s)	57, 1056, 1674
MaeIII	GTNAC	9 cut(s)	274, 280, 397, 506, 1280, 1778, 1970, 2141, 2210
MalI	GATC	8 cut(s)	84, 161, 177, 621, 927, 1143, 2085, 2120
MboI	GATC	8 cut(s)	82, 159, 175, 619, 925, 1141, 2083, 2118
MflI	RGATCY	3 cut(s)	925, 1141, 2083
MhlI	GDGCHC	6 cut(s)	115, 409, 864, 1056, 2034, 2233
MlsI	TGGCCA	3 cut(s)	333, 825, 1175
MluNI	TGGCCA	3 cut(s)	333, 825, 1175
MmeI	TCCRAC	5 cut(s)	616, 1467, 1486, 1599, 2111
Mox20I	TGGCCA	3 cut(s)	333, 825, 1175
MroXI	GAANNNNTTC	3 cut(s)	126, 447, 993
MscI	TGGCCA	3 cut(s)	333, 825, 1175
MseI	TTAA	4 cut(s)	533, 843, 888, 1038
MslI	CAYNNNNRTG	4 cut(s)	471, 590, 627, 791
Msp20I	TGGCCA	3 cut(s)	333, 825, 1175
MspI	CCGG	4 cut(s)	227, 354, 834, 2067
MspR9I	CCNGG	7 cut(s)	34, 604, 753, 1172, 1359, 1852, 2068
Mva1269I	GAATGC	3 cut(s)	195, 1607, 1685
MvaI	CCWGG	6 cut(s)	34, 604, 753, 1172, 1359, 1852
MvnI	CGCG	1 cut(s)	2019
MwoI	GCNNNNNNNGC	4 cut(s)	350, 413, 958, 1939
NciI	CCSGG	1 cut(s)	2068
NcoI	CCATGG	1 cut(s)	1426
NdeI	CATATG	1 cut(s)	1843
NdeII	GATC	8 cut(s)	82, 159, 175, 619, 925, 1141, 2083, 2118
NlaIV	GGNNCC	5 cut(s)	31, 358, 567, 1596, 1849
NmuCI	GTSAC	5 cut(s)	274, 397, 506, 1280, 2141
NsbI	TGCGCA	1 cut(s)	1913
NspI	RCATGY	1 cut(s)	790
NspV	TTCGAA	2 cut(s)	1312, 1647
PciSI	GCTCTTC	1 cut(s)	99
PctI	GAATGC	3 cut(s)	195, 1607, 1685
PdmI	GAANNNNTTC	3 cut(s)	126, 447, 993
PfeI	GAWTC	4 cut(s)	249, 347, 613, 1345
PflMI	CCANNNNNTGG	1 cut(s)	609
PkrI	GCNGC	6 cut(s)	195, 232, 555, 1252, 1375, 1944
PmaCI	CACGTG	1 cut(s)	58
PmlI	CACGTG	1 cut(s)	58
Ppu21I	YACGTR	3 cut(s)	58, 1057, 1675
PpuMI	RGGWCCY	3 cut(s)	29, 425, 566
Psp124BI	GAGCTC	1 cut(s)	864
Psp5II	RGGWCCY	3 cut(s)	29, 425, 566
Psp6I	CCWGG	6 cut(s)	32, 602, 751, 1170, 1357, 1850
PspCI	CACGTG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	1824
PspGI	CCWGG	6 cut(s)	32, 602, 751, 1170, 1357, 1850
PspN4I	GGNNCC	5 cut(s)	31, 358, 567, 1596, 1849
PspPI	GGNCC	9 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033, 1423
PspPPI	RGGWCCY	3 cut(s)	29, 425, 566
PsrI	GAACNNNNNNTAC	2 cut(s)	111, 143
PsuI	RGATCY	3 cut(s)	925, 1141, 2083
RsaI	GTAC	7 cut(s)	672, 785, 1059, 1382, 1673, 1817, 1849
RsaNI	GTAC	7 cut(s)	671, 784, 1058, 1381, 1672, 1816, 1848
RseI	CAYNNNNRTG	4 cut(s)	471, 590, 627, 791
SacI	GAGCTC	1 cut(s)	864
SalI	GTCGAC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	4 cut(s)	533, 843, 888, 1038
SatI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
Sau3AI	GATC	8 cut(s)	82, 159, 175, 619, 925, 1141, 2083, 2118
Sau96I	GGNCC	9 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033, 1423
ScrFI	CCNGG	7 cut(s)	34, 604, 753, 1172, 1359, 1852, 2068
SduI	GDGCHC	6 cut(s)	115, 409, 864, 1056, 2034, 2233
SexAI	ACCWGGT	1 cut(s)	1850
SfaNI	GCATC	3 cut(s)	1578, 1811, 2053
SfuI	TTCGAA	2 cut(s)	1312, 1647
SinI	GGWCC	6 cut(s)	29, 218, 356, 425, 566, 1423
SmiMI	CAYNNNNRTG	4 cut(s)	471, 590, 627, 791
SnaBI	TACGTA	1 cut(s)	1675
SpeI	ACTAGT	1 cut(s)	1501
SsiI	CCGC	6 cut(s)	20, 151, 416, 627, 632, 2017
SspMI	CTAG	7 cut(s)	47, 213, 422, 947, 1502, 1706, 2006
SstI	GAGCTC	1 cut(s)	864
StyD4I	CCNGG	7 cut(s)	32, 602, 751, 1170, 1357, 1850, 2066
StyI	CCWWGG	1 cut(s)	1426
TaaI	ACNGT	5 cut(s)	280, 411, 670, 913, 1757
TaiI	ACGT	3 cut(s)	60, 1059, 1677
TaqI	TCGA	9 cut(s)	64, 252, 1050, 1104, 1137, 1312, 1348, 1647, 1785
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	4 cut(s)	249, 347, 613, 1345
Tru1I	TTAA	4 cut(s)	533, 843, 888, 1038
Tru9I	TTAA	4 cut(s)	533, 843, 888, 1038
TscAI	CASTG	8 cut(s)	77, 279, 406, 414, 916, 1579, 2041, 2170
TseFI	GTSAC	5 cut(s)	274, 397, 506, 1280, 2141
TseI	GCWGC	6 cut(s)	193, 230, 553, 1250, 1373, 1942
Tsp45I	GTSAC	5 cut(s)	274, 397, 506, 1280, 2141
TspDTI	ATGAA	9 cut(s)	105, 358, 489, 737, 1080, 1305, 1677, 1800, 2087
TspGWI	ACGGA	1 cut(s)	1833
TspRI	CASTG	8 cut(s)	77, 279, 406, 414, 916, 1579, 2041, 2170
Van91I	CCANNNNNTGG	1 cut(s)	609
VneI	GTGCAC	1 cut(s)	2030
VpaK11BI	GGWCC	6 cut(s)	29, 218, 356, 425, 566, 1423
XapI	RAATTY	4 cut(s)	639, 1147, 1217, 1625
XbaI	TCTAGA	1 cut(s)	2005
XceI	RCATGY	1 cut(s)	790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1191
XmiI	GTMKAC	2 cut(s)	64, 2264
XmnI	GAANNNNTTC	3 cut(s)	126, 447, 993
XspI	CTAG	7 cut(s)	47, 213, 422, 947, 1502, 1706, 2006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.