Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001548.1

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Forward (+)

213096 .. 213584

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001548.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgtggaggctgaaggtttcagaaggaggaacatatggtaatccatggctcacaagtgtgaataatcacattgggagacaattctgggagtttgacccaaatcttggaacaccggaagagcgagctcaagtggacaaagcacgtcttgagtttcataacaatcgttttcgatccaaacatagttttgatctattaatgagacttcagtttgcaaaggagaaagaaagtgatcaaatggagctaccaactcaggtgaaattaaaaagtgaagaagaaattaatgaagaaatagtagcaaccacattgaggagggggttgagattttactcgactcttcaggctgaggatggtttatggcctggtgaccttggcggtcctttgtttcttctacctggcctggtacgtacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

136

Amino Acids

15.8

Weight (kDa)

5.94

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	104
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	1 cut(s)	165
AcuI	CTGAAG	3 cut(s)	32, 188, 320
AfaI	GTAC	2 cut(s)	402, 406
AfiI	CCNNNNNNNGG	2 cut(s)	104, 306
AjiI	CACGTC	1 cut(s)	143
AjnI	CCWGG	3 cut(s)	358, 391, 396
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	125, 241
AluI	AGCT	2 cut(s)	125, 241
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	70, 193
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	356, 394
AseI	ATTAAT	2 cut(s)	194, 279
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	265, 374
AvaII	GGWCC	1 cut(s)	374
BaeI	ACNNNNGTAYC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	342
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	3 cut(s)	360, 393, 398
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	70, 193
Bme1390I	CCNGG	3 cut(s)	360, 393, 398
Bme18I	GGWCC	1 cut(s)	374
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	374
BmrFI	CCNGG	3 cut(s)	360, 393, 398
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	111, 167
BsaAI	YACGTR	2 cut(s)	404, 408
BsaJI	CCNNGG	2 cut(s)	44, 367
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 306
BseBI	CCWGG	3 cut(s)	360, 393, 398
BseDI	CCNNGG	2 cut(s)	44, 367
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	104, 306
BseMII	CTCAG	2 cut(s)	263, 333
BseRI	GAGGAG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	358, 396
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	113
BsiWI	CGTACG	1 cut(s)	404
BslI	CCNNNNNNNGG	2 cut(s)	104, 306
BsmAI	GTCTC	2 cut(s)	70, 193
BsnI	GGCC	2 cut(s)	358, 396
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	170, 187, 229
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	2 cut(s)	358, 396
BspCNI	CTCAG	2 cut(s)	262, 334
BspPI	GGATC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	44, 367
BssMI	GATC	3 cut(s)	170, 187, 229
BssT1I	CCWWGG	2 cut(s)	44, 367
Bst2UI	CCWGG	3 cut(s)	360, 393, 398
Bst6I	CTCTTC	2 cut(s)	111, 339
BstBAI	YACGTR	2 cut(s)	404, 408
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	249, 342
BstDSI	CCRYGG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	3 cut(s)	173, 190, 232
BstMAI	GTCTC	2 cut(s)	70, 193
BstMBI	GATC	3 cut(s)	170, 187, 229
BstNI	CCWGG	3 cut(s)	360, 393, 398
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	3 cut(s)	358, 391, 396
BstSNI	TACGTA	2 cut(s)	404, 408
BsuRI	GGCC	2 cut(s)	358, 396
BtgI	CCRYGG	1 cut(s)	44
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	401, 405
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	7 cut(s)	10, 49, 125, 241, 341, 358, 396
CviKI_1	RGCY	7 cut(s)	10, 49, 125, 241, 341, 358, 396
CviQI	GTAC	2 cut(s)	401, 405
DdeI	CTNAG	2 cut(s)	249, 342
DpnI	GATC	3 cut(s)	172, 189, 231
DpnII	GATC	3 cut(s)	170, 187, 229
Eam1104I	CTCTTC	2 cut(s)	111, 339
EarI	CTCTTC	2 cut(s)	111, 339
Ecl136II	GAGCTC	1 cut(s)	125
Eco105I	TACGTA	2 cut(s)	404, 408
Eco130I	CCWWGG	2 cut(s)	44, 367
Eco24I	GRGCYC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	3 cut(s)	32, 188, 320
Eco91I	GGTNACC	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	362
EcoRII	CCWGG	3 cut(s)	358, 391, 396
EcoT14I	CCWWGG	2 cut(s)	44, 367
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	2 cut(s)	44, 367
FaeI	CATG	1 cut(s)	48
FaiI	YATR	6 cut(s)	34, 36, 46, 156, 180, 355
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	1 cut(s)	44
FauNDI	CATATG	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	229
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	358, 396
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	1 cut(s)	48
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	265, 374
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	7, 17
HpyCH4IV	ACGT	3 cut(s)	142, 403, 407
HpyCH4V	TGCA	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	249, 342
HpySE526I	ACGT	3 cut(s)	142, 403, 407
Hsp92II	CATG	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	170, 187, 229
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	9 cut(s)	70, 126, 236, 323, 345, 372, 378, 383, 405
MaeII	ACGT	3 cut(s)	142, 403, 407
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	3 cut(s)	172, 189, 231
MboI	GATC	3 cut(s)	170, 187, 229
MboII	GAAGA	6 cut(s)	128, 281, 284, 296, 326, 377
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	3 cut(s)	80, 257, 276
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	20, 300, 303, 337
MseI	TTAA	3 cut(s)	194, 260, 279
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	3 cut(s)	360, 393, 398
MvaI	CCWGG	3 cut(s)	360, 393, 398
NcoI	CCATGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	3 cut(s)	170, 187, 229
NlaIII	CATG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	111
Pfl23II	CGTACG	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Ppu21I	YACGTR	2 cut(s)	404, 408
PshBI	ATTAAT	2 cut(s)	194, 279
Psp124BI	GAGCTC	1 cut(s)	127
Psp6I	CCWGG	3 cut(s)	358, 391, 396
PspEI	GGTNACC	1 cut(s)	362
PspGI	CCWGG	3 cut(s)	358, 391, 396
PspLI	CGTACG	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	374
RsaI	GTAC	2 cut(s)	402, 406
RsaNI	GTAC	2 cut(s)	401, 405
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	194, 260, 279
Sau3AI	GATC	3 cut(s)	170, 187, 229
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	360, 393, 398
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	9 cut(s)	18, 127, 145, 243, 255, 369, 394, 406, 410
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	126, 146
SmoI	CTYRAG	2 cut(s)	126, 146
SnaBI	TACGTA	2 cut(s)	404, 408
Sse9I	AATT	3 cut(s)	80, 257, 276
SsiI	CCGC	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	3 cut(s)	358, 391, 396
StyI	CCWWGG	2 cut(s)	44, 367
TaiI	ACGT	3 cut(s)	145, 406, 410
TaqI	TCGA	2 cut(s)	169, 329
TasI	AATT	3 cut(s)	80, 257, 276
Tru1I	TTAA	3 cut(s)	194, 260, 279
Tru9I	TTAA	3 cut(s)	194, 260, 279
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	143, 297
Van91I	CCANNNNNTGG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	374
VspI	ATTAAT	2 cut(s)	194, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.