Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Forward (+)

17338680 .. 17339224

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g19870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTGGAGGTTGAAGCTTTCAGAAGGCAGAGAGCCATGGCTTACAAGTGTGAACAATCACGTCGGAAGACAATATTGGGAGTTTGATCCAAACCTCGGAACACCGGAAGAGAGAGCTCAAGTGGACAAAGTTCGTCTTGAGTTTCACAAGAATCGTTTTCGCACAAAACATAGTTCCGATCTCCTAATGAGACTTCAGGAAGCAAGTGAAAAGAAGCAAGTAGTATCAGATCAGGTGAAAGACAGAAGTGGTGACGAGGAGGAAGTAATAAGCGAGGAAGCAGTGGGAATCACGTTGAGGAGGGCCTTGAGATATTACTCAACTCTGCAGGCTGACGATGGTTTCTGGCCTGGTGACTATGGTGGACCTTTGTTTCTTCTACCTGGCTTGGTAAGATTTCAATATTTAACCCCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

140

Amino Acids

16.27

Weight (kDa)

5.94

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	13, 401
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	349, 382
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AluBI	AGCT	2 cut(s)	16, 116
AluI	AGCT	2 cut(s)	16, 116
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	2 cut(s)	303, 347
AspS9I	GGNCC	2 cut(s)	303, 365
AsuHPI	GGTGA	3 cut(s)	247, 263, 365
AvaII	GGWCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	2 cut(s)	351, 384
BcoDI	GTCTC	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	326
Bme1390I	CCNGG	2 cut(s)	351, 384
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	303, 365
BmrFI	CCNGG	2 cut(s)	351, 384
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	3 cut(s)	102, 158, 328
BsaJI	CCNNGG	2 cut(s)	35, 94
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	351, 384
BseDI	CCNNGG	2 cut(s)	35, 94
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	272, 313
BshFI	GGCC	2 cut(s)	305, 349
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	305, 349
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	85, 178, 229
Bsp19I	CCATGG	1 cut(s)	35
BspANI	GGCC	2 cut(s)	305, 349
BspMAI	CTGCAG	1 cut(s)	330
BspPI	GGATC	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	35, 94
BssMI	GATC	3 cut(s)	85, 178, 229
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	351, 384
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	35
BstKTI	GATC	3 cut(s)	88, 181, 232
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	85, 178, 229
BstNI	CCWGG	2 cut(s)	351, 384
BstSCI	CCNGG	2 cut(s)	349, 382
BstSFI	CTRYAG	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	305, 349
BtgI	CCRYGG	1 cut(s)	35
BtrI	CACGTC	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	330
Cfr13I	GGNCC	2 cut(s)	303, 365
CviAII	CATG	1 cut(s)	36
CviJI	RGCY	8 cut(s)	16, 34, 40, 116, 305, 332, 349, 387
CviKI_1	RGCY	8 cut(s)	16, 34, 40, 116, 305, 332, 349, 387
DpnI	GATC	3 cut(s)	87, 180, 231
DpnII	GATC	3 cut(s)	85, 178, 229
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	349, 382
EcoT14I	CCWWGG	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	39
FaiI	YATR	3 cut(s)	37, 171, 360
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	305, 349
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	2 cut(s)	151, 288
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	3 cut(s)	247, 263, 365
Hpy166II	GTNNAC	3 cut(s)	52, 124, 365
Hpy188I	TCNGA	5 cut(s)	22, 65, 98, 178, 229
Hpy188III	TCNNGA	2 cut(s)	137, 197
Hpy8I	GTNNAC	3 cut(s)	52, 124, 365
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	17
HpyCH4IV	ACGT	2 cut(s)	60, 293
HpyCH4V	TGCA	1 cut(s)	328
HpySE526I	ACGT	2 cut(s)	60, 293
Hsp92II	CATG	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	85, 178, 229
LpnPI	CCDG	9 cut(s)	117, 182, 218, 314, 331, 336, 363, 369, 396
MaeII	ACGT	2 cut(s)	60, 293
MaeIII	GTNAC	2 cut(s)	251, 353
MalI	GATC	3 cut(s)	87, 180, 231
MboI	GATC	3 cut(s)	85, 178, 229
MboII	GAAGA	3 cut(s)	78, 119, 368
MhlI	GDGCHC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	6 cut(s)	104, 250, 253, 268, 291, 294
MseI	TTAA	1 cut(s)	407
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	351, 384
MvaI	CCWGG	2 cut(s)	351, 384
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	3 cut(s)	85, 178, 229
NlaIII	CATG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	251, 353
PfeI	GAWTC	2 cut(s)	151, 288
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	349, 382
PspGI	CCWGG	2 cut(s)	349, 382
PspPI	GGNCC	2 cut(s)	303, 365
PstI	CTGCAG	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	407
Sau3AI	GATC	3 cut(s)	85, 178, 229
Sau96I	GGNCC	2 cut(s)	303, 365
ScrFI	CCNGG	2 cut(s)	351, 384
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	9 cut(s)	11, 18, 63, 96, 118, 237, 296, 370, 385
SfcI	CTRYAG	1 cut(s)	326
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	3 cut(s)	117, 137, 307
SmoI	CTYRAG	3 cut(s)	117, 137, 307
SspI	AATATT	2 cut(s)	74, 404
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	349, 382
StyI	CCWWGG	1 cut(s)	35
TaiI	ACGT	2 cut(s)	63, 296
TfiI	GAWTC	2 cut(s)	151, 288
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	251, 353
Tsp45I	GTSAC	2 cut(s)	251, 353
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.