Rmu_co8434809.1_g000001

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8434809.1
OG0001409
Physical Location & Seq
Reverse (-)
1 .. 1445
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8434809.1_g000001.1.cds

Sequence Viewer

Length: 563 bp
atgtttggtactgcactaaattatgttagtttgaggttgcttggagaaggtgctgatgatggacaaggggcaatggaaatagcacgaaaatggatattagaccatggtggtgcgactgcaatcacttcatgggggaagatgtggctttcagtacttggggcatatgaatggtctggaaataatccactaccgccagaagtatggctatgtccttactctctcccagttcatccaggaaggatgtggtgtcattgtcgaatggtgtatttgcctatgtcttatctgtatgggaagagattcgttggaccaattacacctacaatccagtcattgagaaaggagctatatacagtcccataccatgaagttgattggaatgaagctcgtaatctatgtgcaaaggaagatctatactatccacacccaatggttcaggatattctgtgggcttctcttcactatgtacttgaaccagtttttatgcgttggccggcaaaaagattgagggagaaggctttggacactgttatgcagcacattcactatgaagatgaaaatactcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

188

Amino Acids

21.88

Weight (kDa)

6.44

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 488
AfaI GTAC 3 cut(s) 10, 153, 465
AgsI TTSAA 1 cut(s) 470
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 343, 383
AluI AGCT 2 cut(s) 343, 383
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 532
Asp700I GAANNNNTTC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 544
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 234
BglII AGATCT 1 cut(s) 406
BisI GCNGC 1 cut(s) 533
BlsI GCNGC 1 cut(s) 534
BmcAI AGTACT 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 3 cut(s) 224, 325, 473
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 229, 246
BseMI GCAATG 1 cut(s) 78
BseNI ACTGG 3 cut(s) 224, 325, 473
BseXI GCAGC 1 cut(s) 544
BshFI GGCC 1 cut(s) 490
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 1 cut(s) 490
Bsp143I GATC 1 cut(s) 406
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 1 cut(s) 191
BspANI GGCC 1 cut(s) 490
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 3 cut(s) 224, 325, 473
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 352, 526
Bst6I CTCTTC 2 cut(s) 287, 459
BstC8I GCNNGC 1 cut(s) 492
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 229, 246
BstKTI GATC 1 cut(s) 409
BstMBI GATC 1 cut(s) 406
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 406
BstXI CCANNNNNNTGG 1 cut(s) 201
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 1 cut(s) 490
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 229, 246
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 492
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 3 cut(s) 9, 152, 464
CviAII CATG 3 cut(s) 104, 129, 362
CviJI RGCY 7 cut(s) 145, 205, 343, 383, 449, 490, 515
CviKI_1 RGCY 7 cut(s) 145, 205, 343, 383, 449, 490, 515
CviQI GTAC 3 cut(s) 9, 152, 464
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 2 cut(s) 287, 459
EarI CTCTTC 2 cut(s) 287, 459
Eco130I CCWWGG 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 3 cut(s) 107, 132, 365
FaqI GGGAC 1 cut(s) 338
FatI CATG 3 cut(s) 103, 128, 361
FauNDI CATATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 533
FokI GGATG 2 cut(s) 216, 253
Fsp4HI GCNGC 1 cut(s) 533
GluI GCNGC 1 cut(s) 533
HaeIII GGCC 1 cut(s) 490
HapII CCGG 1 cut(s) 491
Hin1II CATG 3 cut(s) 107, 132, 365
HinfI GANTC 1 cut(s) 297
HpaII CCGG 1 cut(s) 491
Hpy188III TCNNGA 2 cut(s) 174, 434
HpyAV CCTTC 3 cut(s) 41, 231, 505
HpyCH4III ACNGT 2 cut(s) 352, 526
HpyCH4V TGCA 4 cut(s) 14, 119, 398, 532
Hsp92II CATG 3 cut(s) 107, 132, 365
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 9 cut(s) 159, 207, 219, 237, 246, 338, 419, 486, 504
Lsp1109I GCAGC 1 cut(s) 544
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 5 cut(s) 148, 304, 416, 446, 560
MflI RGATCY 1 cut(s) 406
MluCI AATT 2 cut(s) 19, 309
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 2 cut(s) 27, 498
MroNI GCCGGC 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 296
MslI CAYNNNNRTG 4 cut(s) 88, 108, 166, 527
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NaeI GCCGGC 1 cut(s) 492
NcoI CCATGG 1 cut(s) 103
NdeI CATATG 1 cut(s) 163
NdeII GATC 1 cut(s) 406
NgoMIV GCCGGC 1 cut(s) 490
NlaIII CATG 3 cut(s) 107, 132, 365
PdiI GCCGGC 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 297
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 1 cut(s) 305
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 3 cut(s) 10, 153, 465
RsaNI GTAC 3 cut(s) 9, 152, 464
RseI CAYNNNNRTG 4 cut(s) 88, 108, 166, 527
SatI GCNGC 1 cut(s) 533
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 305
ScaI AGTACT 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 234
SetI ASST 5 cut(s) 38, 52, 319, 345, 385
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 4 cut(s) 88, 108, 166, 527
Sse9I AATT 2 cut(s) 19, 309
SsiI CCGC 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 352, 526
TaqI TCGA 1 cut(s) 256
TasI AATT 2 cut(s) 19, 309
TatI WGTACW 2 cut(s) 151, 463
TfiI GAWTC 1 cut(s) 297
TscAI CASTG 1 cut(s) 529
TseI GCWGC 1 cut(s) 532
TspDTI ATGAA 6 cut(s) 117, 180, 218, 378, 393, 561
TspRI CASTG 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.