Rh4AG078500

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001409
Physical Location & Seq
Forward (+)
15973262 .. 15988307
15046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG078500.1

Sequence Viewer

Length: 528 bp
ATGTGGAGGCTGAAGGTTTCAGAAGGAGGAAGAGATGGTAATCCATGGCTCACAAGTGTGAATAATCACATCGGGAGACAATTCTGGGAGTTCGACCCGAATCTCGGAACACCGGAAGAGCGAGCTCAAGTGGAAAAAGCACGTCTTAAGTTTCATAACAATCGTTTTCGATCCAAACATAGTTCTGATCTATTAATGAGACTTCAGTTTGCAAAGGAGAAAGAAAGTGATCGAATGGAGCTACCAGCTCAGGTGAAAATAAAAAGTGAAGAAGAAATTAATGAAGAAGTAGTAGCAACCACATTGAGGAGGGGGTTGAGATTTTACTCGACTCTTCAGGCTGAGGATGGTTTATGGCCTAATGACCTTGGCGGTCCATTGTTTCTTCTACCTGGCTTGAACACAGGTTACATTATTGATGGTCCAAAGAAAAATATGAGAAGACATGACATGCATAACAGCAATGGAGGGTTTGCATCATATGAACTCACAAGATCCTATGCCTGGTTGGAGGTGATGAACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

175

Amino Acids

20.32

Weight (kDa)

6.99

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 372
AclWI GGATC 2 cut(s) 165, 489
AcuI CTGAAG 3 cut(s) 32, 188, 320
AfiI CCNNNNNNNGG 3 cut(s) 104, 306, 504
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 400
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 2 cut(s) 391, 503
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 3 cut(s) 125, 241, 248
AluI AGCT 3 cut(s) 125, 241, 248
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 70, 193
AlwI GGATC 2 cut(s) 165, 489
AoxI GGCC 1 cut(s) 356
AseI ATTAAT 2 cut(s) 194, 279
AspS9I GGNCC 2 cut(s) 374, 422
AsuHPI GGTGA 2 cut(s) 265, 526
AvaII GGWCC 2 cut(s) 374, 422
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 342
BccI CCATC 3 cut(s) 29, 341, 413
BciT130I CCWGG 2 cut(s) 393, 505
BcoDI GTCTC 2 cut(s) 70, 193
BfrI CTTAAG 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 393, 505
Bme18I GGWCC 2 cut(s) 374, 422
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 374, 422
BmrFI CCNGG 2 cut(s) 393, 505
BmsI GCATC 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 448
Bpu10I CCTNAGC 2 cut(s) 249, 342
BpuEI CTTGAG 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 44, 367
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 306, 504
Bse3DI GCAATG 1 cut(s) 469
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 2 cut(s) 393, 505
BseDI CCNNGG 2 cut(s) 44, 367
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 104, 306, 504
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 263, 333
BseRI GAGGAG 1 cut(s) 322
BshFI GGCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 104, 306, 504
BsmAI GTCTC 2 cut(s) 70, 193
BsnI GGCC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 4 cut(s) 170, 187, 229, 494
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 2 cut(s) 262, 334
BspPI GGATC 2 cut(s) 165, 489
BspQI GCTCTTC 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 44, 367
BssMI GATC 4 cut(s) 170, 187, 229, 494
BssT1I CCWWGG 2 cut(s) 44, 367
Bst2UI CCWGG 2 cut(s) 393, 505
Bst6I CTCTTC 3 cut(s) 25, 111, 339
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 249, 342
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 4 cut(s) 173, 190, 232, 497
BstMAI GTCTC 2 cut(s) 70, 193
BstMBI GATC 4 cut(s) 170, 187, 229, 494
BstNI CCWGG 2 cut(s) 393, 505
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 2 cut(s) 391, 503
BstV2I GAAGAC 1 cut(s) 448
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 374, 422
CviAII CATG 3 cut(s) 45, 446, 451
CviJI RGCY 8 cut(s) 10, 49, 125, 241, 248, 341, 358, 396
CviKI_1 RGCY 8 cut(s) 10, 49, 125, 241, 248, 341, 358, 396
DdeI CTNAG 2 cut(s) 249, 342
DpnI GATC 4 cut(s) 172, 189, 231, 496
DpnII GATC 4 cut(s) 170, 187, 229, 494
Eam1104I CTCTTC 3 cut(s) 25, 111, 339
EarI CTCTTC 3 cut(s) 25, 111, 339
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 44, 367
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 374, 422
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 3 cut(s) 32, 188, 320
EcoICRI GAGCTC 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 391, 503
EcoT14I CCWWGG 2 cut(s) 44, 367
EcoT22I ATGCAT 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 44, 367
FaeI CATG 3 cut(s) 48, 449, 454
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 3 cut(s) 44, 445, 450
FauNDI CATATG 1 cut(s) 481
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 113
Hin1II CATG 3 cut(s) 48, 449, 454
HinfI GANTC 2 cut(s) 100, 331
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 265, 526
Hpy188I TCNGA 3 cut(s) 22, 107, 187
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 7, 17
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 212, 454, 476
HpyF3I CTNAG 2 cut(s) 249, 342
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 3 cut(s) 48, 449, 454
Kzo9I GATC 4 cut(s) 170, 187, 229, 494
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 238
LweI GCATC 1 cut(s) 485
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 407
MalI GATC 4 cut(s) 172, 189, 231, 496
MboI GATC 4 cut(s) 170, 187, 229, 494
MboII GAAGA 8 cut(s) 42, 128, 281, 284, 296, 326, 377, 453
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 80, 276
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 6 cut(s) 20, 300, 303, 337, 461, 505
Mph1103I ATGCAT 1 cut(s) 456
MseI TTAA 4 cut(s) 147, 194, 279, 526
MslI CAYNNNNRTG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 393, 505
MvaI CCWGG 2 cut(s) 393, 505
NcoI CCATGG 1 cut(s) 44
NdeI CATATG 1 cut(s) 481
NdeII GATC 4 cut(s) 170, 187, 229, 494
NlaIII CATG 3 cut(s) 48, 449, 454
NsiI ATGCAT 1 cut(s) 456
NspI RCATGY 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 100
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PshBI ATTAAT 2 cut(s) 194, 279
Psp124BI GAGCTC 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 391, 503
PspGI CCWGG 2 cut(s) 391, 503
PspPI GGNCC 2 cut(s) 374, 422
PsrI GAACNNNNNNTAC 2 cut(s) 392, 424
PsuI RGATCY 1 cut(s) 494
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 4 cut(s) 147, 194, 279, 526
Sau3AI GATC 4 cut(s) 170, 187, 229, 494
Sau96I GGNCC 2 cut(s) 374, 422
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 2 cut(s) 393, 505
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 1 cut(s) 485
SinI GGWCC 2 cut(s) 374, 422
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 126, 146
SmoI CTYRAG 2 cut(s) 126, 146
Sse9I AATT 2 cut(s) 80, 276
SsiI CCGC 1 cut(s) 372
SstI GAGCTC 1 cut(s) 127
StyD4I CCNGG 2 cut(s) 391, 503
StyI CCWWGG 2 cut(s) 44, 367
TaiI ACGT 1 cut(s) 145
TaqI TCGA 4 cut(s) 93, 169, 232, 329
TasI AATT 2 cut(s) 80, 276
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 4 cut(s) 147, 194, 279, 526
Tru9I TTAA 4 cut(s) 147, 194, 279, 526
TspDTI ATGAA 3 cut(s) 143, 297, 498
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 374, 422
VspI ATTAAT 2 cut(s) 194, 279
XceI RCATGY 1 cut(s) 454
Zsp2I ATGCAT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.