Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000824.1

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Reverse (-)

5835 .. 7916

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000824.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgttatgctattgtcggttggtgtacatgcctatgtcatacttatacgggaagaggtttgttggccaaatcaccggattggttcgatcactaagacgagagctctacactgagccatactttgacattaactggactacagccagaaacattgttgcaaaggaagatttgtattatccacaccccctggtgcaagatatgctgtggggatttcttcaccatgttgctgaaccaattctggcgcgttggcccttttctatcctgagaaagaaggccctagaagtagcaatcgagcacgtacactatgaagacgagaacagcagatatctttgcattggaagtgtagaaaaggtgttatgtttgattgcttgttgggtcgaagatccaaattcggaagcgtacaagcttcacctggctagaataccagattacttttggatcgctgaagatggcttgaaatttcagagtttcggtagtcaaatgtgggacgcagcctttgcaattcaggcaatactctcttgtgacctaaatgaagagtatgggacaacacttcgaaaagcgcacgactttgtgaaggcttcacaggttcgagaaaaccctggtgacaacttcgcagctatgtaccgacacatatctaaaggcgcatggacattctcaatacaggaccatggttggcaagtctccgactgcacttccgaaggactaaaggtggcactcttgctctcgcaaatgccagagaaactagttgggaaaggaatggaaagcgaatgtttttatgatgctgtgaatgtcattctttctttacaagtaagaaccaattatctgagcattatagagagagagagagaaaatggaagagagagaaactattggagacttcacgcggagcccgtcaccggccgccggattccggtcaccggtcgccggaatccggccaactttcgcctgaatccggtcaccggttgccggaattcggtcaccaactgccgcccaccggaatttgctgaaaatctcaccggaaagtttttttgccaccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042299 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

346

Amino Acids

40.15

Weight (kDa)

7.14

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	244, 884
AciI	CCGC	3 cut(s)	884, 901, 988
AclWI	GGATC	2 cut(s)	377, 446
AcoI	YGGCCR	3 cut(s)	64, 898, 933
AcsI	RAATTY	4 cut(s)	388, 458, 970, 998
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	4 cut(s)	26, 300, 401, 623
AgeI	ACCGGT	2 cut(s)	917, 959
AgsI	TTSAA	1 cut(s)	457
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	3 cut(s)	186, 411, 598
AluBI	AGCT	3 cut(s)	103, 406, 617
AluI	AGCT	3 cut(s)	103, 406, 617
Alw21I	GWGCWC	2 cut(s)	105, 297
Alw26I	GTCTC	2 cut(s)	685, 868
AlwI	GGATC	2 cut(s)	377, 446
AoxI	GGCC	5 cut(s)	64, 248, 273, 898, 933
ApeKI	GCWGC	2 cut(s)	491, 614
ApoI	RAATTY	4 cut(s)	388, 458, 970, 998
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AsiGI	ACCGGT	2 cut(s)	917, 959
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	3 cut(s)	244, 562, 644
AspS9I	GGNCC	3 cut(s)	249, 274, 664
AsuHPI	GGTGA	9 cut(s)	64, 209, 401, 614, 886, 907, 949, 970, 1006
AsuII	TTCGAA	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	664
BalI	TGGCCA	1 cut(s)	66
BanII	GRGCYC	2 cut(s)	105, 891
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	2 cut(s)	105, 297
BbvI	GCAGC	2 cut(s)	503, 626
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	3 cut(s)	188, 413, 600
BcoDI	GTCTC	2 cut(s)	685, 868
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	3 cut(s)	278, 417, 743
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	4 cut(s)	492, 615, 901, 988
BlsI	GCNGC	4 cut(s)	493, 616, 902, 989
Bme1390I	CCNGG	3 cut(s)	188, 413, 600
Bme18I	GGWCC	1 cut(s)	664
BmgT120I	GGNCC	3 cut(s)	249, 274, 664
BmiI	GGNNCC	1 cut(s)	888
BmrFI	CCNGG	3 cut(s)	188, 413, 600
BmsI	GCATC	1 cut(s)	769
BpiI	GAAGAC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	186, 598, 667
BsaWI	WCCGGW	7 cut(s)	74, 910, 917, 952, 959, 994, 1016
Bse118I	RCCGGY	3 cut(s)	896, 917, 959
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	3 cut(s)	188, 413, 600
BseDI	CCNNGG	3 cut(s)	186, 598, 667
BseMII	CTCAG	3 cut(s)	102, 254, 815
BseNI	ACTGG	1 cut(s)	137
BseX3I	CGGCCG	1 cut(s)	898
BseXI	GCAGC	2 cut(s)	503, 626
BsgI	GTGCAG	1 cut(s)	673
Bsh1236I	CGCG	2 cut(s)	244, 884
Bsh1285I	CGRYCG	2 cut(s)	901, 922
BshFI	GGCC	5 cut(s)	66, 250, 275, 900, 935
BshTI	ACCGGT	2 cut(s)	917, 959
BsiEI	CGRYCG	2 cut(s)	901, 922
BsiHKAI	GWGCWC	2 cut(s)	105, 297
BslFI	GGGAC	2 cut(s)	500, 556
BsmAI	GTCTC	2 cut(s)	685, 868
BsmFI	GGGAC	2 cut(s)	500, 556
BsnI	GGCC	5 cut(s)	66, 250, 275, 900, 935
Bsp119I	TTCGAA	1 cut(s)	553
Bsp1286I	GDGCHC	3 cut(s)	105, 297, 891
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	86, 382, 438
Bsp19I	CCATGG	1 cut(s)	667
BspACI	CCGC	3 cut(s)	884, 901, 988
BspANI	GGCC	5 cut(s)	66, 250, 275, 900, 935
BspCNI	CTCAG	3 cut(s)	103, 255, 816
BspFNI	CGCG	2 cut(s)	244, 884
BspLI	GGNNCC	1 cut(s)	888
BspPI	GGATC	2 cut(s)	377, 446
BspT104I	TTCGAA	1 cut(s)	553
BsrFI	RCCGGY	3 cut(s)	896, 917, 959
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	3 cut(s)	896, 917, 959
BssECI	CCNNGG	3 cut(s)	186, 598, 667
BssMI	GATC	3 cut(s)	86, 382, 438
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	3 cut(s)	188, 413, 600
Bst6I	CTCTTC	3 cut(s)	47, 528, 850
BstAPI	GCANNNNNTGC	2 cut(s)	199, 497
BstAUI	TGTACA	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	298
BstBI	TTCGAA	1 cut(s)	553
BstDEI	CTNAG	4 cut(s)	92, 111, 263, 824
BstDSI	CCRYGG	1 cut(s)	667
BstEII	GGTNACC	3 cut(s)	913, 955, 976
BstFNI	CGCG	2 cut(s)	244, 884
BstHHI	GCGC	3 cut(s)	244, 562, 644
BstKTI	GATC	3 cut(s)	89, 385, 441
BstMAI	GTCTC	2 cut(s)	685, 868
BstMBI	GATC	3 cut(s)	86, 382, 438
BstMCI	CGRYCG	2 cut(s)	901, 922
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 497, 506
BstNI	CCWGG	3 cut(s)	188, 413, 600
BstNSI	RCATGY	1 cut(s)	31
BstPI	GGTNACC	3 cut(s)	913, 955, 976
BstSCI	CCNGG	3 cut(s)	186, 411, 598
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	2 cut(s)	244, 884
BstV1I	GCAGC	2 cut(s)	503, 626
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	898
BsuRI	GGCC	5 cut(s)	66, 250, 275, 900, 935
BtgI	CCRYGG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	108
CfoI	GCGC	3 cut(s)	244, 562, 644
Cfr10I	RCCGGY	3 cut(s)	896, 917, 959
Cfr13I	GGNCC	3 cut(s)	249, 274, 664
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	4 cut(s)	25, 299, 400, 622
CspAI	ACCGGT	2 cut(s)	917, 959
CviAII	CATG	4 cut(s)	28, 221, 645, 668
CviQI	GTAC	4 cut(s)	25, 299, 400, 622
DdeI	CTNAG	4 cut(s)	92, 111, 263, 824
DpnI	GATC	3 cut(s)	88, 384, 440
DpnII	GATC	3 cut(s)	86, 382, 438
EaeI	YGGCCR	3 cut(s)	64, 898, 933
EagI	CGGCCG	1 cut(s)	898
Eam1104I	CTCTTC	3 cut(s)	47, 528, 850
EarI	CTCTTC	3 cut(s)	47, 528, 850
Ecl136II	GAGCTC	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	898
Eco130I	CCWWGG	1 cut(s)	667
Eco24I	GRGCYC	2 cut(s)	105, 891
Eco32I	GATATC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	664
Eco52I	CGGCCG	1 cut(s)	898
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	465
Eco91I	GGTNACC	3 cut(s)	913, 955, 976
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	3 cut(s)	913, 955, 976
EcoRI	GAATTC	1 cut(s)	970
EcoRII	CCWGG	3 cut(s)	186, 411, 598
EcoRV	GATATC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	667
EcoT38I	GRGCYC	2 cut(s)	105, 891
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	4 cut(s)	31, 224, 648, 671
FaqI	GGGAC	2 cut(s)	500, 556
FatI	CATG	4 cut(s)	27, 220, 644, 667
Fnu4HI	GCNGC	4 cut(s)	492, 615, 901, 988
FriOI	GRGCYC	2 cut(s)	105, 891
Fsp4HI	GCNGC	4 cut(s)	492, 615, 901, 988
FspBI	CTAG	3 cut(s)	278, 417, 743
GlaI	GCGC	3 cut(s)	243, 561, 643
GluI	GCNGC	4 cut(s)	492, 615, 901, 988
HaeIII	GGCC	5 cut(s)	66, 250, 275, 900, 935
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	3 cut(s)	244, 562, 644
Hin1II	CATG	4 cut(s)	31, 224, 648, 671
Hin6I	GCGC	3 cut(s)	242, 560, 642
HinP1I	GCGC	3 cut(s)	242, 560, 642
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	3 cut(s)	907, 928, 949
HphI	GGTGA	9 cut(s)	64, 209, 401, 614, 886, 907, 949, 970, 1006
Hpy166II	GTNNAC	2 cut(s)	25, 301
Hpy188I	TCNGA	5 cut(s)	394, 465, 685, 697, 825
Hpy188III	TCNNGA	2 cut(s)	262, 590
Hpy8I	GTNNAC	2 cut(s)	25, 301
HpyAV	CCTTC	3 cut(s)	265, 568, 692
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	158, 193, 333, 500, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 497, 506
HpyF3I	CTNAG	4 cut(s)	92, 111, 263, 824
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	31, 224, 648, 671
HspAI	GCGC	3 cut(s)	242, 560, 642
Kzo9I	GATC	3 cut(s)	86, 382, 438
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	2 cut(s)	503, 626
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	3 cut(s)	278, 417, 743
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	6 cut(s)	521, 602, 892, 913, 955, 976
MalI	GATC	3 cut(s)	88, 384, 440
MboI	GATC	3 cut(s)	86, 382, 438
MboII	GAAGA	8 cut(s)	64, 176, 206, 320, 392, 458, 545, 867
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	3 cut(s)	105, 297, 891
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	7 cut(s)	234, 388, 458, 501, 817, 970, 998
MluNI	TGGCCA	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	66
MspR9I	CCNGG	3 cut(s)	188, 413, 600
MvaI	CCWGG	3 cut(s)	188, 413, 600
MvnI	CGCG	2 cut(s)	244, 884
MwoI	GCNNNNNNNGC	3 cut(s)	199, 497, 506
NcoI	CCATGG	1 cut(s)	667
NdeII	GATC	3 cut(s)	86, 382, 438
NlaIII	CATG	4 cut(s)	31, 224, 648, 671
NlaIV	GGNNCC	1 cut(s)	888
NmuCI	GTSAC	6 cut(s)	521, 602, 892, 913, 955, 976
NspI	RCATGY	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	888
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	907, 928, 949
PinAI	ACCGGT	2 cut(s)	917, 959
PkrI	GCNGC	4 cut(s)	493, 616, 902, 989
Ppu21I	YACGTR	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	3 cut(s)	186, 411, 598
PspEI	GGTNACC	3 cut(s)	913, 955, 976
PspGI	CCWGG	3 cut(s)	186, 411, 598
PspN4I	GGNNCC	1 cut(s)	888
PspPI	GGNCC	3 cut(s)	249, 274, 664
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	4 cut(s)	26, 300, 401, 623
RsaNI	GTAC	4 cut(s)	25, 299, 400, 622
RseI	CAYNNNNRTG	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	4 cut(s)	492, 615, 901, 988
Sau3AI	GATC	3 cut(s)	86, 382, 438
Sau96I	GGNCC	3 cut(s)	249, 274, 664
ScrFI	CCNGG	3 cut(s)	188, 413, 600
SduI	GDGCHC	3 cut(s)	105, 297, 891
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	553
SinI	GGWCC	1 cut(s)	664
SmiMI	CAYNNNNRTG	1 cut(s)	32
SpeI	ACTAGT	1 cut(s)	742
Sse9I	AATT	7 cut(s)	234, 388, 458, 501, 817, 970, 998
SsiI	CCGC	3 cut(s)	884, 901, 988
SspMI	CTAG	3 cut(s)	278, 417, 743
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	186, 411, 598
StyI	CCWWGG	1 cut(s)	667
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	5 cut(s)	85, 291, 378, 553, 589
TaqII	GACCGA	1 cut(s)	964
TasI	AATT	7 cut(s)	234, 388, 458, 501, 817, 970, 998
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	2 cut(s)	903, 990
TfiI	GAWTC	3 cut(s)	907, 928, 949
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	6 cut(s)	521, 602, 892, 913, 955, 976
TseI	GCWGC	2 cut(s)	491, 614
Tsp45I	GTSAC	6 cut(s)	521, 602, 892, 913, 955, 976
TspDTI	ATGAA	2 cut(s)	321, 546
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	4 cut(s)	388, 458, 970, 998
XceI	RCATGY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	278, 417, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.