Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002070.1

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Reverse (-)

198234 .. 198907

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002070.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgagacttcagtttgcaaaggagaaagaaagtgatcgaatggagctaccagctcaggtgaaaataaaaagtgaagaagaaattaatgaagaagtagtagcaaccacattgaggagggggttgagattttactcgactcttcaggctgaggatggtttatggcctgatgaccttggcggtccattgtttcttctacctggcttggcaccaacggcggagcggggctggccgaaagcctcccagacctcttctgggcagcgattgaggtcagaggcggtcggggttgcaggtttctgggcttccatggtttccggcgagctcgctgcacaccgccaagttttcgatcaccttcgccttcaccgcttgatcaaggctgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

126

Amino Acids

14.08

Weight (kDa)

6.85

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	205
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	6 cut(s)	177, 215, 220, 275, 331, 361
AcoI	YGGCCR	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	111, 252
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	3 cut(s)	46, 53, 319
AluI	AGCT	3 cut(s)	46, 53, 319
Alw21I	GWGCWC	1 cut(s)	321
AoxI	GGCC	2 cut(s)	161, 227
ApeKI	GCWGC	2 cut(s)	256, 323
AseI	ATTAAT	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	70, 338, 350
AvaII	GGWCC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	268, 310
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	228
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	198
BclI	TGATCA	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	2 cut(s)	257, 324
BlsI	GCNGC	2 cut(s)	258, 325
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	198
Bpu10I	CCTNAGC	2 cut(s)	54, 147
BsaJI	CCNNGG	2 cut(s)	172, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 252
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	172, 303
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	111, 252
BseMII	CTCAG	2 cut(s)	68, 138
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	268, 310
BsgI	GTGCAG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	163, 229
BshNI	GGYRCC	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	111, 252
BsnI	GGCC	2 cut(s)	163, 229
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	34, 343, 366
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	6 cut(s)	177, 215, 220, 275, 331, 361
BspANI	GGCC	2 cut(s)	163, 229
BspCNI	CTCAG	2 cut(s)	67, 139
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	172, 303
BssMI	GATC	3 cut(s)	34, 343, 366
BssT1I	CCWWGG	2 cut(s)	172, 303
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	144, 253
BstC8I	GCNNGC	3 cut(s)	227, 317, 321
BstDEI	CTNAG	2 cut(s)	54, 147
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	3 cut(s)	37, 346, 369
BstMBI	GATC	3 cut(s)	34, 343, 366
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 226, 360
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	268, 310
BsuRI	GGCC	2 cut(s)	163, 229
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	3 cut(s)	227, 317, 321
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	54, 147
DpnI	GATC	3 cut(s)	36, 345, 368
DpnII	GATC	3 cut(s)	34, 343, 366
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	2 cut(s)	144, 253
EarI	CTCTTC	2 cut(s)	144, 253
EciI	GGCGGA	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	172, 303
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	172, 303
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	2 cut(s)	172, 303
FaeI	CATG	1 cut(s)	307
FaiI	YATR	2 cut(s)	160, 305
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	213
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	257, 324
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	2 cut(s)	257, 324
GluI	GCNGC	2 cut(s)	257, 324
HaeIII	GGCC	2 cut(s)	163, 229
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	3 cut(s)	70, 338, 350
Hpy188I	TCNGA	2 cut(s)	271, 380
HpyAV	CCTTC	2 cut(s)	359, 365
HpyCH4V	TGCA	3 cut(s)	17, 287, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 226, 360
HpyF3I	CTNAG	2 cut(s)	54, 147
Hsp92II	CATG	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	3 cut(s)	34, 343, 366
LmnI	GCTCC	2 cut(s)	43, 217
Lsp1109I	GCAGC	2 cut(s)	268, 310
MalI	GATC	3 cut(s)	36, 345, 368
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	3 cut(s)	34, 343, 366
MboII	GAAGA	6 cut(s)	86, 89, 101, 131, 182, 240
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	7 cut(s)	105, 108, 142, 247, 256, 258, 265
MseI	TTAA	1 cut(s)	84
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	212, 226, 360
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	3 cut(s)	34, 343, 366
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	258, 325
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PshBI	ATTAAT	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	257, 324
Sau3AI	GATC	3 cut(s)	34, 343, 366
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	321
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	6 cut(s)	177, 215, 220, 275, 331, 361
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	2 cut(s)	172, 303
TaqI	TCGA	3 cut(s)	37, 134, 342
TasI	AATT	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	2 cut(s)	256, 323
TspDTI	ATGAA	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.