Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Forward (+)

507127 .. 512411

Gene Structure 5285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35858

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGTGGAAGCTGAAGATTGCGGAGGGAGGACCCTGGCTAAGGACACTAAACAATCACGTGGGTCGACAACACTGGGAGTTCGATCCAGATGCCGGAACACCAGAAGAACGAGCCGAAGTAGAGAGAGTTCGTGAGGAGTTTACGAGAAACCGCTTTCGGATCAAACAAAGTGCTGATCTTTTGATGAGAATGCAGCTTACTAAGGAAAACCCTAGTGGACCAATTCCTGCAGCAATTAAAGTGAAGGGAATAGAGGATATAACAGAGAAGACAGTGACAGCAACAATAAGAAGGTCTCTCGGCTTCTATTCCTCCCTCCAGGCCCATGATGGCCATTGGCCTGCTGAATCCGCCGGTCCCTTGTTCTTCATTCAACCTTTGGTTATAGCGTTGTACGTTACTGGAGCATTGTGTGCCGTTCTAGGACCTGAACACCAGAAGGAAATTATTCGTTACATCTACAATCATCAGAATGAAGATGGAGGTTGGGGACTACACATAGAAGGTCATAGCACGATGTTTGGGTCAGCGCTAAGCTACATTGCGTTGAGGCTGCTAGGAGAGGGTCCTGATGATGGGGAAGGCATGGCCGTGGCAAGAGCCAGGAAATGGATTCTTGATCATGGTGGTGCGGTTGGAATTCCATCTTGGGGAAAGTTTTGGCTTACGGTACTTGGCGTATATGATTGGTCAGGGTGCAACCCTTTGCCCCCTGAGTTCTGGCTTCTACCAAATATGTCCCCTATTCATCCAGGGAAGATGTTATGCTATTGTCGGTTGGTGTACATGCCTATGTCATACTTATACGGGAAGAGGTTTGTTGGCCAAATCACCGGATTGGTTCGATCACTGAGACGAGAGCTCTACACTGAGCCATACTTTGACATTAACTGGACTAAAGCCAGAAACACTGTTGCAAAGGAAGATTTGTATTATCCACACCCCCTGGTGCAAGATATGCTGTGGGGATTTCTTCACCATGTTGCTGAACCAATTCTGGCTCGTTGGCCCTTTTCTATCCTGAGAAAGAAGGCCCTAGAAGTAGCAATCGAGCACGTACACTATGAAGACGAGAACAGCAGATATCTTTGCATTGGAAGTGTAGAAAAGGTGTTATGTTTAATTGCTTGTTGGGTCGAAGATCCAAATTCGGAAGCGTACAAGCTTCACCTGGCTAGAATACCAGATTACTTTTGGATCGCTGAAGATGGCTTGAAATTTCAGAGTTTCGGTAGTCAGATGTGGGACGCAGCCTTTGCAATTCAGGCAATACTCTCTTGTGACCTAAATGAAGAGTATGGGACAACACTTCGAAAAGCGCACGACTTTGTGAAGGCTTCACAGGTTCGAGAAAACCCTGGTGACAACTTCGCAGCCATGTACCGACACATATCTAAAGGCGCATGGACATTCTCAATACACGACCATGGTTGGCAAGTCTCCGACTGCACTTCAGAAGGACTAAAGGTTGCACTCTTGCTCTCGCAAATGCCAGAGAAACTAGTTGGGGAAGGAATGGAAAGAGAATGTTTTTATGATGCTGTGAATGTCATTCTTTCTTTACAAAGCATCAGTGGCGGTTTCCCTGCTTGGGAGCCTCAAAGAGCATTTCGTTGGTTGGAGAAATTCAACCCCACAGAGTTCTTTGAAGATACTCTTATTGAACGAGAGTACGTAGAATGCACTGCATCAGCAGTTCAAGGTCTAGCACTCTTTAGAAGATTGTATCCCAACCATCGAAGAAAGGAAATAGACAGTTGCATATCAAGGGCAATTCGTTACATTGAAGAAACACAGAACCCTGATGGTTCATGGTACGGATGCTGGGGTATTTGCTACACATACGGTACCTGGTTTGGTGTAGGAGCACTAGCATCCTGTGGGAAGAAGTACCAGAATAGTCCCATATTGCGCAAAGCCTGTGCATTTTTGCTATCAAAGCAGCTACCCGATGGTGGATGGGGAGAGAGCTACCTTTCCAGTCAAAATAAGGTTTATACAAATCTAGAAGGCAACCGCGCTAATCTGGTACACACCGCATGGGCTTTATTGTCCCTCATCGATGCCGGGCAGGGTGATGTAGATCCAACCCCCATTCATCGTGGAATAAGGGTTTTGATCAATTCACAAATGGAGGATGGTGACTTCCCTCAACAGGAAATTACTGGAGTATTCATGAGAAATTGTACACTAAACTACTCCTCATATCGTAATATCTTCCCGAAATGGGCTCTCGGGAAGTATCGCCGACGCATTCTGATGCTTAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042299 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

757

Amino Acids

86.43

Weight (kDa)

6.56

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	97 - 359	1.2e-38	Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C	PF13243	412 - 750	2.9e-54	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1913
Acc65I	GGTACC	1 cut(s)	1847
AccB1I	GGYRCC	1 cut(s)	1847
AccB7I	CCANNNNNTGG	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	64
AccII	CGCG	1 cut(s)	2019
AciI	CCGC	7 cut(s)	20, 151, 351, 632, 1578, 2017, 2037
AclWI	GGATC	5 cut(s)	77, 167, 1136, 1205, 2078
AcoI	YGGCCR	3 cut(s)	331, 588, 823
AcsI	RAATTY	4 cut(s)	639, 1147, 1217, 1625
AcuI	CTGAAG	3 cut(s)	32, 1224, 1437
AcvI	CACGTG	1 cut(s)	58
AfeI	AGCGCT	1 cut(s)	531
AfiI	CCNNNNNNNGG	9 cut(s)	39, 92, 575, 609, 650, 1591, 1955, 2155, 2227
AgsI	TTSAA	7 cut(s)	374, 1216, 1630, 1649, 1664, 1700, 1787
AhlI	ACTAGT	1 cut(s)	1501
AjnI	CCWGG	8 cut(s)	32, 318, 602, 751, 945, 1170, 1357, 1850
AjuI	GAANNNNNNNTTGG	2 cut(s)	631, 663
AluBI	AGCT	7 cut(s)	10, 196, 537, 862, 1165, 1945, 1971
AluI	AGCT	7 cut(s)	10, 196, 537, 862, 1165, 1945, 1971
Alw21I	GWGCWC	3 cut(s)	864, 1056, 1870
Alw26I	GTCTC	3 cut(s)	300, 847, 1444
AlwI	GGATC	5 cut(s)	77, 167, 1136, 1205, 2078
Ama87I	CYCGRG	1 cut(s)	2234
Aor51HI	AGCGCT	1 cut(s)	531
AoxI	GGCC	7 cut(s)	321, 331, 338, 588, 823, 1007, 1032
ApeKI	GCWGC	6 cut(s)	193, 230, 553, 1250, 1373, 1942
ApoI	RAATTY	4 cut(s)	639, 1147, 1217, 1625
ArsI	GACNNNNNNTTYG	2 cut(s)	1238, 1270
Asp700I	GAANNNNTTC	2 cut(s)	447, 993
Asp718I	GGTACC	1 cut(s)	1847
AspLEI	GCGC	5 cut(s)	532, 1321, 1403, 1914, 2021
AspS9I	GGNCC	8 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033
AsuC2I	CCSGG	1 cut(s)	2068
AsuHPI	GGTGA	6 cut(s)	823, 968, 1160, 1373, 2087, 2153
AsuII	TTCGAA	1 cut(s)	1312
AvaI	CYCGRG	1 cut(s)	2234
AvaII	GGWCC	5 cut(s)	29, 218, 356, 425, 566
BalI	TGGCCA	2 cut(s)	333, 825
BanI	GGYRCC	1 cut(s)	1847
BanII	GRGCYC	2 cut(s)	864, 2233
BbrPI	CACGTG	1 cut(s)	58
BbsI	GAAGAC	2 cut(s)	275, 1074
Bbv12I	GWGCWC	3 cut(s)	864, 1056, 1870
BbvI	GCAGC	6 cut(s)	205, 242, 540, 1262, 1385, 1954
BceAI	ACGGC	2 cut(s)	401, 575
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	8 cut(s)	34, 320, 604, 753, 947, 1172, 1359, 1852
BciVI	GTATCC	1 cut(s)	1737
BclI	TGATCA	2 cut(s)	619, 2118
BcnI	CCSGG	1 cut(s)	2068
BcoDI	GTCTC	3 cut(s)	300, 847, 1444
BcuI	ACTAGT	1 cut(s)	1501
BfaI	CTAG	9 cut(s)	213, 422, 557, 1037, 1176, 1502, 1706, 1871, 2006
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	1737
BisI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
BlpI	GCTNAGC	1 cut(s)	533
BlsI	GCNGC	6 cut(s)	195, 232, 555, 1252, 1375, 1944
Bme1390I	CCNGG	9 cut(s)	34, 320, 604, 753, 947, 1172, 1359, 1852, 2068
Bme18I	GGWCC	5 cut(s)	29, 218, 356, 425, 566
BmeT110I	CYCGRG	1 cut(s)	2234
BmgT120I	GGNCC	8 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033
BmiI	GGNNCC	5 cut(s)	31, 358, 567, 1596, 1849
BmrFI	CCNGG	9 cut(s)	34, 320, 604, 753, 947, 1172, 1359, 1852, 2068
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	8 cut(s)	79, 1528, 1578, 1697, 1811, 1883, 2053, 2250
BmuI	ACTGGG	1 cut(s)	82
BpiI	GAAGAC	2 cut(s)	275, 1074
BpmI	CTGGAG	3 cut(s)	302, 423, 2187
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	533
Bpu14I	TTCGAA	1 cut(s)	1312
BpuMI	CCSGG	1 cut(s)	2068
Bsa29I	ATCGAT	1 cut(s)	2061
BsaAI	YACGTR	3 cut(s)	58, 1057, 1675
BsaBI	GATNNNNATC	1 cut(s)	2082
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	6 cut(s)	32, 591, 752, 945, 1357, 1426
BsaWI	WCCGGW	1 cut(s)	833
Bsc4I	CCNNNNNNNGG	9 cut(s)	39, 92, 575, 609, 650, 1591, 1955, 2155, 2227
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	5 cut(s)	77, 406, 896, 1980, 2170
Bse3DI	GCAATG	1 cut(s)	540
Bse8I	GATNNNNATC	1 cut(s)	2082
BseBI	CCWGG	8 cut(s)	34, 320, 604, 753, 947, 1172, 1359, 1852
BseCI	ATCGAT	1 cut(s)	2061
BseDI	CCNNGG	6 cut(s)	32, 591, 752, 945, 1357, 1426
BseGI	GGATG	5 cut(s)	748, 1826, 1874, 1964, 2143
BseJI	GATNNNNATC	1 cut(s)	2082
BseLI	CCNNNNNNNGG	9 cut(s)	39, 92, 575, 609, 650, 1591, 1955, 2155, 2227
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	4 cut(s)	705, 842, 861, 1013
BseNI	ACTGG	5 cut(s)	77, 406, 896, 1980, 2170
BseRI	GAGGAG	2 cut(s)	149, 2191
BseXI	GCAGC	6 cut(s)	205, 242, 540, 1262, 1385, 1954
BseYI	CCCAGC	1 cut(s)	1824
BsgI	GTGCAG	1 cut(s)	1432
Bsh1236I	CGCG	1 cut(s)	2019
BshFI	GGCC	7 cut(s)	323, 333, 340, 590, 825, 1009, 1034
BshNI	GGYRCC	1 cut(s)	1847
BshVI	ATCGAT	1 cut(s)	2061
BsiHKAI	GWGCWC	3 cut(s)	864, 1056, 1870
BsiHKCI	CYCGRG	1 cut(s)	2234
BsiSI	CCGG	4 cut(s)	93, 354, 834, 2067
BslFI	GGGAC	7 cut(s)	342, 504, 724, 1259, 1315, 1887, 2038
BslI	CCNNNNNNNGG	9 cut(s)	39, 92, 575, 609, 650, 1591, 1955, 2155, 2227
BsmAI	GTCTC	3 cut(s)	300, 847, 1444
BsmBI	CGTCTC	1 cut(s)	847
BsmFI	GGGAC	7 cut(s)	342, 504, 724, 1259, 1315, 1887, 2038
BsmI	GAATGC	3 cut(s)	195, 1685, 2253
BsnI	GGCC	7 cut(s)	323, 333, 340, 590, 825, 1009, 1034
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	2234
Bsp119I	TTCGAA	1 cut(s)	1312
Bsp1286I	GDGCHC	4 cut(s)	864, 1056, 1870, 2233
Bsp1407I	TGTACA	2 cut(s)	783, 2186
Bsp143I	GATC	9 cut(s)	82, 159, 175, 619, 845, 1141, 1197, 2083, 2118
Bsp1720I	GCTNAGC	1 cut(s)	533
Bsp19I	CCATGG	1 cut(s)	1426
BspACI	CCGC	7 cut(s)	20, 151, 351, 632, 1578, 2017, 2037
BspANI	GGCC	7 cut(s)	323, 333, 340, 590, 825, 1009, 1034
BspCNI	CTCAG	4 cut(s)	706, 843, 862, 1014
BspDI	ATCGAT	1 cut(s)	2061
BspFNI	CGCG	1 cut(s)	2019
BspHI	TCATGA	1 cut(s)	2175
BspLI	GGNNCC	5 cut(s)	31, 358, 567, 1596, 1849
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	5 cut(s)	77, 167, 1136, 1205, 2078
BspT104I	TTCGAA	1 cut(s)	1312
BspT107I	GGYRCC	1 cut(s)	1847
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	353
BsrGI	TGTACA	2 cut(s)	783, 2186
BsrI	ACTGG	5 cut(s)	77, 406, 896, 1980, 2170
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	6 cut(s)	32, 591, 752, 945, 1357, 1426
BssMI	GATC	9 cut(s)	82, 159, 175, 619, 845, 1141, 1197, 2083, 2118
BssT1I	CCWWGG	1 cut(s)	1426
Bst2UI	CCWGG	8 cut(s)	34, 320, 604, 753, 947, 1172, 1359, 1852
Bst4CI	ACNGT	5 cut(s)	274, 670, 913, 1757, 1847
Bst6I	CTCTTC	2 cut(s)	806, 1287
BstAPI	GCANNNNNTGC	3 cut(s)	413, 958, 1256
BstAUI	TGTACA	2 cut(s)	783, 2186
BstBAI	YACGTR	3 cut(s)	58, 1057, 1675
BstBI	TTCGAA	1 cut(s)	1312
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	7 cut(s)	38, 201, 533, 714, 851, 870, 1022
BstDSI	CCRYGG	2 cut(s)	591, 1426
BstENI	CCTNNNNNAGG	1 cut(s)	37
BstF5I	GGATG	5 cut(s)	748, 1826, 1874, 1964, 2143
BstFNI	CGCG	1 cut(s)	2019
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	5 cut(s)	532, 1321, 1403, 1914, 2021
BstKTI	GATC	9 cut(s)	85, 162, 178, 622, 848, 1144, 1200, 2086, 2121
BstMAI	GTCTC	3 cut(s)	300, 847, 1444
BstMBI	GATC	9 cut(s)	82, 159, 175, 619, 845, 1141, 1197, 2083, 2118
BstMWI	GCNNNNNNNGC	7 cut(s)	350, 413, 958, 1256, 1265, 1575, 1939
BstNI	CCWGG	8 cut(s)	34, 320, 604, 753, 947, 1172, 1359, 1852
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	9 cut(s)	32, 318, 602, 751, 945, 1170, 1357, 1850, 2066
BstSFI	CTRYAG	1 cut(s)	228
BstSNI	TACGTA	1 cut(s)	1675
BstUI	CGCG	1 cut(s)	2019
BstV1I	GCAGC	6 cut(s)	205, 242, 540, 1262, 1385, 1954
BstV2I	GAAGAC	2 cut(s)	275, 1074
BstX2I	RGATCY	2 cut(s)	1141, 2083
BstYI	RGATCY	2 cut(s)	1141, 2083
Bsu15I	ATCGAT	1 cut(s)	2061
BsuI	GTATCC	1 cut(s)	1737
BsuRI	GGCC	7 cut(s)	323, 333, 340, 590, 825, 1009, 1034
BsuTUI	ATCGAT	1 cut(s)	2061
BtgI	CCRYGG	2 cut(s)	591, 1426
BtsCI	GGATG	5 cut(s)	748, 1826, 1874, 1964, 2143
BtsI	GCAGTG	1 cut(s)	1683
BtsIMutI	CAGTG	7 cut(s)	70, 279, 848, 867, 909, 1579, 1683
Cac8I	GCNNGC	1 cut(s)	342
CciI	TCATGA	1 cut(s)	2175
CfoI	GCGC	5 cut(s)	532, 1321, 1403, 1914, 2021
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	8 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033
ClaI	ATCGAT	1 cut(s)	2061
CseI	GACGC	2 cut(s)	1256, 2259
CsiI	ACCWGGT	1 cut(s)	1850
DdeI	CTNAG	7 cut(s)	38, 201, 533, 714, 851, 870, 1022
DpnI	GATC	9 cut(s)	84, 161, 177, 621, 847, 1143, 1199, 2085, 2120
DpnII	GATC	9 cut(s)	82, 159, 175, 619, 845, 1141, 1197, 2083, 2118
EaeI	YGGCCR	3 cut(s)	331, 588, 823
Eam1104I	CTCTTC	2 cut(s)	806, 1287
EarI	CTCTTC	2 cut(s)	806, 1287
EciI	GGCGGA	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	862
Eco105I	TACGTA	1 cut(s)	1675
Eco130I	CCWWGG	1 cut(s)	1426
Eco24I	GRGCYC	2 cut(s)	864, 2233
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	1085
Eco47I	GGWCC	5 cut(s)	29, 218, 356, 425, 566
Eco47III	AGCGCT	1 cut(s)	531
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	3 cut(s)	32, 1224, 1437
Eco72I	CACGTG	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	2234
EcoICRI	GAGCTC	1 cut(s)	862
EcoNI	CCTNNNNNAGG	1 cut(s)	37
EcoO109I	RGGNCCY	4 cut(s)	29, 425, 566, 1033
EcoRI	GAATTC	1 cut(s)	639
EcoRII	CCWGG	8 cut(s)	32, 318, 602, 751, 945, 1170, 1357, 1850
EcoRV	GATATC	1 cut(s)	1085
EcoT14I	CCWWGG	1 cut(s)	1426
EcoT38I	GRGCYC	2 cut(s)	864, 2233
ErhI	CCWWGG	1 cut(s)	1426
Esp3I	CGTCTC	1 cut(s)	847
FalI	AAGNNNNNCTT	2 cut(s)	1641, 1673
FaqI	GGGAC	7 cut(s)	342, 504, 724, 1259, 1315, 1887, 2038
FbaI	TGATCA	2 cut(s)	619, 2118
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
FokI	GGATG	5 cut(s)	735, 1833, 1861, 1971, 2150
FriOI	GRGCYC	2 cut(s)	864, 2233
Fsp4HI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
FspBI	CTAG	9 cut(s)	213, 422, 557, 1037, 1176, 1502, 1706, 1871, 2006
FspI	TGCGCA	1 cut(s)	1913
GlaI	GCGC	5 cut(s)	531, 1320, 1402, 1913, 2020
GluI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
GsaI	CCCAGC	1 cut(s)	1828
GsuI	CTGGAG	3 cut(s)	302, 423, 2187
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	7 cut(s)	323, 333, 340, 590, 825, 1009, 1034
HapII	CCGG	4 cut(s)	93, 354, 834, 2067
HgaI	GACGC	2 cut(s)	1256, 2259
HhaI	GCGC	5 cut(s)	532, 1321, 1403, 1914, 2021
Hin6I	GCGC	5 cut(s)	530, 1319, 1401, 1912, 2019
HinP1I	GCGC	5 cut(s)	530, 1319, 1401, 1912, 2019
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	1163
HinfI	GANTC	2 cut(s)	347, 613
HpaII	CCGG	4 cut(s)	93, 354, 834, 2067
HphI	GGTGA	6 cut(s)	823, 968, 1160, 1373, 2087, 2153
Hpy166II	GTNNAC	7 cut(s)	65, 141, 218, 784, 1060, 2032, 2189
Hpy188I	TCNGA	8 cut(s)	159, 471, 1153, 1224, 1239, 1444, 1456, 2259
Hpy8I	GTNNAC	7 cut(s)	65, 141, 218, 784, 1060, 2032, 2189
Hpy99I	CGWCG	1 cut(s)	2253
HpyCH4III	ACNGT	5 cut(s)	274, 670, 913, 1757, 1847
HpyCH4IV	ACGT	4 cut(s)	57, 396, 1056, 1674
HpyF10VI	GCNNNNNNNGC	7 cut(s)	350, 413, 958, 1256, 1265, 1575, 1939
HpyF3I	CTNAG	7 cut(s)	38, 201, 533, 714, 851, 870, 1022
HpySE526I	ACGT	4 cut(s)	57, 396, 1056, 1674
HspAI	GCGC	5 cut(s)	530, 1319, 1401, 1912, 2019
KpnI	GGTACC	1 cut(s)	1851
Ksp22I	TGATCA	2 cut(s)	619, 2118
Kzo9I	GATC	9 cut(s)	82, 159, 175, 619, 845, 1141, 1197, 2083, 2118
LmnI	GCTCC	3 cut(s)	404, 1594, 1865
Lsp1109I	GCAGC	6 cut(s)	205, 242, 540, 1262, 1385, 1954
LweI	GCATC	8 cut(s)	79, 1528, 1578, 1697, 1811, 1883, 2053, 2250
MabI	ACCWGGT	1 cut(s)	1850
MaeI	CTAG	9 cut(s)	213, 422, 557, 1037, 1176, 1502, 1706, 1871, 2006
MaeII	ACGT	4 cut(s)	57, 396, 1056, 1674
MaeIII	GTNAC	7 cut(s)	274, 397, 452, 1280, 1361, 1778, 2141
MalI	GATC	9 cut(s)	84, 161, 177, 621, 847, 1143, 1199, 2085, 2120
MboI	GATC	9 cut(s)	82, 159, 175, 619, 845, 1141, 1197, 2083, 2118
MflI	RGATCY	2 cut(s)	1141, 2083
MhlI	GDGCHC	4 cut(s)	864, 1056, 1870, 2233
MlsI	TGGCCA	2 cut(s)	333, 825
MluNI	TGGCCA	2 cut(s)	333, 825
MmeI	TCCRAC	4 cut(s)	616, 1467, 1599, 2111
Mox20I	TGGCCA	2 cut(s)	333, 825
MroXI	GAANNNNTTC	2 cut(s)	447, 993
MscI	TGGCCA	2 cut(s)	333, 825
MseI	TTAA	4 cut(s)	237, 888, 1121, 2265
MslI	CAYNNNNRTG	6 cut(s)	471, 590, 627, 791, 1425, 2258
Msp20I	TGGCCA	2 cut(s)	333, 825
MspI	CCGG	4 cut(s)	93, 354, 834, 2067
MspR9I	CCNGG	9 cut(s)	34, 320, 604, 753, 947, 1172, 1359, 1852, 2068
Mva1269I	GAATGC	3 cut(s)	195, 1685, 2253
MvaI	CCWGG	8 cut(s)	34, 320, 604, 753, 947, 1172, 1359, 1852
MvnI	CGCG	1 cut(s)	2019
MwoI	GCNNNNNNNGC	7 cut(s)	350, 413, 958, 1256, 1265, 1575, 1939
NciI	CCSGG	1 cut(s)	2068
NcoI	CCATGG	1 cut(s)	1426
NdeII	GATC	9 cut(s)	82, 159, 175, 619, 845, 1141, 1197, 2083, 2118
NlaIV	GGNNCC	5 cut(s)	31, 358, 567, 1596, 1849
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	4 cut(s)	274, 1280, 1361, 2141
NsbI	TGCGCA	1 cut(s)	1913
NspI	RCATGY	1 cut(s)	790
NspV	TTCGAA	1 cut(s)	1312
PagI	TCATGA	1 cut(s)	2175
PctI	GAATGC	3 cut(s)	195, 1685, 2253
PdmI	GAANNNNTTC	2 cut(s)	447, 993
PfeI	GAWTC	2 cut(s)	347, 613
PflMI	CCANNNNNTGG	1 cut(s)	609
PkrI	GCNGC	6 cut(s)	195, 232, 555, 1252, 1375, 1944
PmaCI	CACGTG	1 cut(s)	58
PmlI	CACGTG	1 cut(s)	58
Ppu21I	YACGTR	3 cut(s)	58, 1057, 1675
PpuMI	RGGWCCY	3 cut(s)	29, 425, 566
Psp124BI	GAGCTC	1 cut(s)	864
Psp5II	RGGWCCY	3 cut(s)	29, 425, 566
Psp6I	CCWGG	8 cut(s)	32, 318, 602, 751, 945, 1170, 1357, 1850
PspCI	CACGTG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	1824
PspGI	CCWGG	8 cut(s)	32, 318, 602, 751, 945, 1170, 1357, 1850
PspN4I	GGNNCC	5 cut(s)	31, 358, 567, 1596, 1849
PspPI	GGNCC	8 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033
PspPPI	RGGWCCY	3 cut(s)	29, 425, 566
PsrI	GAACNNNNNNTAC	2 cut(s)	111, 143
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	1141, 2083
RseI	CAYNNNNRTG	6 cut(s)	471, 590, 627, 791, 1425, 2258
SacI	GAGCTC	1 cut(s)	864
SalI	GTCGAC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	237, 888, 1121, 2265
SatI	GCNGC	6 cut(s)	194, 231, 554, 1251, 1374, 1943
Sau3AI	GATC	9 cut(s)	82, 159, 175, 619, 845, 1141, 1197, 2083, 2118
Sau96I	GGNCC	8 cut(s)	29, 218, 322, 356, 425, 566, 1008, 1033
ScrFI	CCNGG	9 cut(s)	34, 320, 604, 753, 947, 1172, 1359, 1852, 2068
SduI	GDGCHC	4 cut(s)	864, 1056, 1870, 2233
SexAI	ACCWGGT	1 cut(s)	1850
SfaNI	GCATC	8 cut(s)	79, 1528, 1578, 1697, 1811, 1883, 2053, 2250
SfcI	CTRYAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	1312
SinI	GGWCC	5 cut(s)	29, 218, 356, 425, 566
SmiMI	CAYNNNNRTG	6 cut(s)	471, 590, 627, 791, 1425, 2258
SnaBI	TACGTA	1 cut(s)	1675
SpeI	ACTAGT	1 cut(s)	1501
SsiI	CCGC	7 cut(s)	20, 151, 351, 632, 1578, 2017, 2037
SspMI	CTAG	9 cut(s)	213, 422, 557, 1037, 1176, 1502, 1706, 1871, 2006
SstI	GAGCTC	1 cut(s)	864
StyD4I	CCNGG	9 cut(s)	32, 318, 602, 751, 945, 1170, 1357, 1850, 2066
StyI	CCWWGG	1 cut(s)	1426
TaaI	ACNGT	5 cut(s)	274, 670, 913, 1757, 1847
TaiI	ACGT	4 cut(s)	60, 399, 1059, 1677
TaqI	TCGA	9 cut(s)	64, 81, 844, 1050, 1137, 1312, 1348, 1738, 2061
TatI	WGTACW	2 cut(s)	783, 2186
TfiI	GAWTC	2 cut(s)	347, 613
Tru1I	TTAA	4 cut(s)	237, 888, 1121, 2265
Tru9I	TTAA	4 cut(s)	237, 888, 1121, 2265
TscAI	CASTG	7 cut(s)	77, 279, 855, 874, 916, 1579, 1690
TseFI	GTSAC	4 cut(s)	274, 1280, 1361, 2141
TseI	GCWGC	6 cut(s)	193, 230, 553, 1250, 1373, 1942
Tsp45I	GTSAC	4 cut(s)	274, 1280, 1361, 2141
TspDTI	ATGAA	8 cut(s)	358, 489, 737, 1080, 1305, 1800, 2087, 2164
TspGWI	ACGGA	1 cut(s)	1833
TspRI	CASTG	7 cut(s)	77, 279, 855, 874, 916, 1579, 1690
Van91I	CCANNNNNTGG	1 cut(s)	609
VpaK11BI	GGWCC	5 cut(s)	29, 218, 356, 425, 566
XagI	CCTNNNNNAGG	1 cut(s)	37
XapI	RAATTY	4 cut(s)	639, 1147, 1217, 1625
XbaI	TCTAGA	1 cut(s)	2005
XceI	RCATGY	1 cut(s)	790
XcmI	CCANNNNNNNNNTGG	2 cut(s)	326, 1191
XmiI	GTMKAC	1 cut(s)	64
XmnI	GAANNNNTTC	2 cut(s)	447, 993
XspI	CTAG	9 cut(s)	213, 422, 557, 1037, 1176, 1502, 1706, 1871, 2006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.