Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Reverse (-)

29440822 .. 29448773

Gene Structure 7952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1246100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTGGAAGCTGAAGGTAGGGGCAGAGACAGTGGGAGGAGAAGGTGGCGGTCAATGGCTGAAGAGTGTGAACAACCGCTTGGGCCGCCAGGTGTGGGAGTTCCACCCAGAGACTGGAACCCCAGAAGAGCTTCAGCAAATTGAAGATGCCCGCAAGGCTTTCTGGAACCACCGTTTCGAAAGGCGGCACAGCTCGGACCTCCTCATGAGAATTCAGTTTGCAAAGGAGAATCCATGTGCCACTAATCTACCACAACTCAAAGTTAAAGATCAAGAAGAGGTGACGGAAGAGGCAGTGACAACCACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

5.92

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AciI	CCGC	5 cut(s)	48, 76, 85, 151, 184
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	3 cut(s)	32, 80, 116
AfiI	CCNNNNNNNGG	2 cut(s)	94, 113
AgsI	TTSAA	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	3 cut(s)	10, 130, 192
AluI	AGCT	3 cut(s)	10, 130, 192
Alw26I	GTCTC	2 cut(s)	20, 104
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	82, 196
AsuHPI	GGTGA	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	20, 104
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	2 cut(s)	85, 185
BlsI	GCNGC	2 cut(s)	86, 186
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	82, 196
BmiI	GGNNCC	2 cut(s)	118, 167
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 113
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	94, 113
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	51, 191
BshFI	GGCC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	94, 113
BsmAI	GTCTC	2 cut(s)	20, 104
BsnI	GGCC	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	5 cut(s)	48, 76, 85, 151, 184
BspANI	GGCC	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	118, 167
BspQI	GCTCTTC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	31, 173
Bst6I	CTCTTC	4 cut(s)	56, 120, 270, 282
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	20, 104
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 155
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	36, 300
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	82, 196
CviAII	CATG	2 cut(s)	205, 234
CviJI	RGCY	6 cut(s)	10, 58, 84, 130, 158, 192
CviKI_1	RGCY	6 cut(s)	10, 58, 84, 130, 158, 192
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	4 cut(s)	56, 120, 270, 282
EarI	CTCTTC	4 cut(s)	56, 120, 270, 282
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	3 cut(s)	32, 80, 116
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	208, 237
FaiI	YATR	3 cut(s)	206, 235, 310
FatI	CATG	2 cut(s)	204, 233
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	85, 185
Fsp4HI	GCNGC	2 cut(s)	85, 185
GluI	GCNGC	2 cut(s)	85, 185
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	208, 237
HinfI	GANTC	1 cut(s)	229
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	163, 205, 272
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	7, 35
HpyCH4III	ACNGT	2 cut(s)	31, 173
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 155
Hsp92II	CATG	2 cut(s)	208, 237
Kzo9I	GATC	1 cut(s)	268
LguI	GCTCTTC	1 cut(s)	120
LpnPI	CCDG	6 cut(s)	74, 99, 101, 120, 135, 148
LweI	GCATC	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	280, 295
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	5 cut(s)	73, 137, 155, 287, 299
MluCI	AATT	2 cut(s)	138, 210
MnlI	CCTC	5 cut(s)	29, 209, 212, 271, 283
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	84, 155
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	208, 237
NlaIV	GGNNCC	2 cut(s)	118, 167
NmuCI	GTSAC	2 cut(s)	280, 295
NspV	TTCGAA	1 cut(s)	177
PagI	TCATGA	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	86, 186
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	118, 167
PspPI	GGNCC	2 cut(s)	82, 196
PstNI	CAGNNNCTG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	85, 185
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	82, 196
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	8 cut(s)	12, 18, 46, 93, 132, 194, 201, 282
SfaNI	GCATC	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	2 cut(s)	138, 210
SsiI	CCGC	5 cut(s)	48, 76, 85, 151, 184
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	31, 173
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	138, 210
TauI	GCSGC	2 cut(s)	87, 187
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	36, 300
TseFI	GTSAC	2 cut(s)	280, 295
Tsp45I	GTSAC	2 cut(s)	280, 295
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	36, 300
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.