Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Forward (+)

9180149 .. 9180508

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0113700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCATCAACAATGCAGGACGTCAAGGATCCCAATAAGAGGGCTGAGCTTGATGAGCGAGCAAAGAGGGGAGAGGAAGTTATTCCTCGTGGATTTGGTCGGAAGAGCGTTGAGGCTCAGCTCCACCTTGCTGAAGGACGTAAAAAGGGTGGACTGGGCACCAAGGACAAGTCCGGGGACGAGCGTGCTCGCGTGAGGATGGCATTCGGGTGCATCCACTTGAGGAGAAGGAGAAAAAACGAGGGTCATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009555 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010685 GO:0010686 GO:0016043 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0016871 GO:0019742 GO:0019745 GO:0031559 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110

Pfam Domains

Protein Families

Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

84

Amino Acids

9.57

Weight (kDa)

10.67

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	12 - 62	5.4e-13	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	1 cut(s)	192
AclWI	GGATC	2 cut(s)	23, 36
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	39
AluBI	AGCT	2 cut(s)	49, 121
AluI	AGCT	2 cut(s)	49, 121
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	23, 36
Asp700I	GAANNNNTTC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	190
BccI	CCATC	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	175
BlpI	GCTNAGC	2 cut(s)	45, 117
Bme1390I	CCNGG	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	30, 160
BmrFI	CCNGG	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	2 cut(s)	14, 222
BmuI	ACTGGG	1 cut(s)	164
Bpu1102I	GCTNAGC	2 cut(s)	45, 117
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	162, 174
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	162, 174
BseGI	GGATG	2 cut(s)	204, 213
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	36, 131
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	161, 190
Bsp143I	GATC	1 cut(s)	28
Bsp1720I	GCTNAGC	2 cut(s)	45, 117
BspCNI	CTCAG	2 cut(s)	37, 130
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	30, 160
BspPI	GGATC	2 cut(s)	23, 36
BspQI	GCTCTTC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	162, 174
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	60, 186, 190
BstDEI	CTNAG	2 cut(s)	45, 117
BstF5I	GGATG	2 cut(s)	204, 213
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	204, 213
Cac8I	GCNNGC	3 cut(s)	60, 186, 190
CviJI	RGCY	4 cut(s)	44, 49, 116, 121
CviKI_1	RGCY	4 cut(s)	44, 49, 116, 121
DdeI	CTNAG	2 cut(s)	45, 117
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaqI	GGGAC	1 cut(s)	191
FokI	GGATG	2 cut(s)	200, 211
HapII	CCGG	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	21
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	102
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	128, 222
HpyCH4IV	ACGT	2 cut(s)	21, 139
HpyCH4V	TGCA	2 cut(s)	16, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	2 cut(s)	45, 117
HpySE526I	ACGT	2 cut(s)	21, 139
Hsp92I	GRCGYC	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	28
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	3 cut(s)	2, 140, 187
LweI	GCATC	2 cut(s)	14, 222
MaeII	ACGT	2 cut(s)	21, 139
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	161, 190
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	8 cut(s)	33, 60, 67, 96, 106, 189, 216, 235
MroXI	GAANNNNTTC	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	208
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	1 cut(s)	28
NlaIV	GGNNCC	2 cut(s)	30, 160
PciSI	GCTCTTC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	30, 160
PsuI	RGATCY	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	2 cut(s)	161, 190
SetI	ASST	5 cut(s)	24, 51, 123, 129, 142
SfaNI	GCATC	2 cut(s)	14, 222
SmiMI	CAYNNNNRTG	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	2 cut(s)	24, 142
XmnI	GAANNNNTTC	1 cut(s)	81
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.