MD17G1246700.v1.1

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
29471576 .. 29478570
6995 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1246700.v1.1.491

Sequence Viewer

Length: 141 bp
ATGCCCGCAAGGCTTTCTGGAACCAATTCAGACAAGCTGTCGGGGTGTGCAAAGGAGAATCCATGTGCCACTAATCTACCACAACTCAAAGTCAAAGATCAAGAAGAGGTGACAGAAGAGGCAGTGACAACCACATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

47

Amino Acids

4.92

Weight (kDa)

4.77

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AhdI GACNNNNNGTC 1 cut(s) 37
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 10
BmeRI GACNNNNNGTC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 22
BssMI GATC 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 99, 111
BstC8I GCNNGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 6
CviAII CATG 1 cut(s) 63
CviJI RGCY 2 cut(s) 13, 37
CviKI_1 RGCY 2 cut(s) 13, 37
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DriI GACNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 2 cut(s) 99, 111
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 2 cut(s) 99, 111
FaeI CATG 1 cut(s) 66
FaiI YATR 2 cut(s) 64, 139
FatI CATG 1 cut(s) 62
FauI CCCGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 66
HinfI GANTC 1 cut(s) 58
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 18, 101
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 66
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 1 cut(s) 3
MaeIII GTNAC 2 cut(s) 109, 124
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 116, 128
MluCI AATT 1 cut(s) 25
MnlI CCTC 2 cut(s) 100, 112
MroXI GAANNNNTTC 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 2 cut(s) 109, 124
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 97
SetI ASST 2 cut(s) 39, 111
SgeI CNNG 7 cut(s) 17, 21, 30, 46, 54, 75, 113
Sse9I AATT 1 cut(s) 25
SsiI CCGC 1 cut(s) 6
TasI AATT 1 cut(s) 25
TfiI GAWTC 1 cut(s) 58
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 2 cut(s) 109, 124
Tsp45I GTSAC 2 cut(s) 109, 124
TspRI CASTG 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.