Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Reverse (-)

61750221 .. 61751456

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG453700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTGGAAGCTGAAAATTGGGGCAGACACAGTAAGAGAAGGTGGTGATCATCAATGCCTGAGGAGTGTGAACAATCACTTGGGACGCCAAGTTTGGGAGTACCATCCAGAGCTTGGGACCCCTGAAGAGCTTCAGCAAATCGAAGATGCTCGAAAAGGTTTCTGGGACAATCGATTCGAGACCAAGCACAGCTCTGATCTCCTCATGAGAATTCAGTTTGCAAAGGAGAACCCATGTGGGACTAATCTACCACAACTCAAAGTTAGATATGCAGAAGAGGTTATTACACTTTCAATTACAGGAGCTCTAAATGCTGTGTTATCCATAGAGCATCAACGGGAGATGTGTAGATATCTCTATAATCATCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

123

Amino Acids

14.38

Weight (kDa)

6.29

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	2 cut(s)	116, 144
AcyI	GRCGYC	1 cut(s)	85
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	94, 113
AgsI	TTSAA	1 cut(s)	294
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	5 cut(s)	10, 112, 130, 192, 305
AluI	AGCT	5 cut(s)	10, 112, 130, 192, 305
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	210
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 158, 190
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	117
AxyI	CCTNAGG	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	307
BccI	CCATC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	118, 119
BmsI	GCATC	2 cut(s)	136, 340
Bsa29I	ATCGAT	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	85
BsaI	GGTCTC	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 113
Bse21I	CCTNAGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	172
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	94, 113
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	76, 191
BshVI	ATCGAT	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	307
BslFI	GGGAC	4 cut(s)	96, 130, 179, 253
BslI	CCNNNNNNNGG	2 cut(s)	94, 113
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	4 cut(s)	96, 130, 179, 253
Bso31I	GGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	46, 196
BspCNI	CTCAG	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	118, 119
BspQI	GCTCTTC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	173
BssMI	GATC	2 cut(s)	46, 196
BssNI	GRCGYC	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	120, 270
BstACI	GRCGYC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	49, 199
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	2 cut(s)	46, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	311
Bsu15I	ATCGAT	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	59
BsuTUI	ATCGAT	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	103
CciI	TCATGA	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	172
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	2 cut(s)	205, 234
CviJI	RGCY	5 cut(s)	10, 112, 130, 192, 305
CviKI_1	RGCY	5 cut(s)	10, 112, 130, 192, 305
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	2 cut(s)	48, 198
DpnII	GATC	2 cut(s)	46, 196
Eam1104I	CTCTTC	2 cut(s)	120, 270
EarI	CTCTTC	2 cut(s)	120, 270
Ecl136II	GAGCTC	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	305
Eco57I	CTGAAG	2 cut(s)	116, 144
Eco81I	CCTNAGG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	307
FaeI	CATG	2 cut(s)	208, 237
FaiI	YATR	5 cut(s)	206, 235, 270, 326, 360
FaqI	GGGAC	4 cut(s)	96, 130, 179, 253
FatI	CATG	2 cut(s)	204, 233
FbaI	TGATCA	1 cut(s)	46
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	307
HgaI	GACGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	208, 237
HinfI	GANTC	1 cut(s)	174
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	107, 178, 205
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	221, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	208, 237
KflI	GGGWCCC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 196
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	5 cut(s)	71, 120, 135, 148, 285
LweI	GCATC	2 cut(s)	136, 340
MalI	GATC	2 cut(s)	48, 198
MboI	GATC	2 cut(s)	46, 196
MboII	GAAGA	3 cut(s)	137, 155, 287
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	3 cut(s)	15, 210, 294
MnlI	CCTC	3 cut(s)	54, 212, 271
MroXI	GAANNNNTTC	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	2 cut(s)	46, 196
NlaIII	CATG	2 cut(s)	208, 237
NlaIV	GGNNCC	2 cut(s)	118, 119
PagI	TCATGA	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	174
PflMI	CCANNNNNTGG	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	307
Psp5II	RGGWCCY	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	118, 119
PspPI	GGNCC	1 cut(s)	117
PspPPI	RGGWCCY	1 cut(s)	117
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	46, 196
Sau96I	GGNCC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	8 cut(s)	12, 43, 114, 132, 160, 194, 282, 307
SfaNI	GCATC	2 cut(s)	136, 340
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	3 cut(s)	15, 210, 294
SstI	GAGCTC	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	4 cut(s)	141, 151, 172, 177
TasI	AATT	3 cut(s)	15, 210, 294
TfiI	GAWTC	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.