Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Forward (+)

12981425 .. 12990700

Gene Structure 9276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG073800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTGGAGGCTGAAGGTTTCAGAAGGAGGAAGAGATGGTAACCCATGGCTCACAAGTGTGAATAATCACATCGGGAGACAATTTTGGGAGTTCGACCCAAATCTCGGAACACTGGAAGAGCGAGCTCAGGTGGAAAAAACACGTCTTGAGTTTCGTAACAATCGTTTTCAATCCGAACATAGTTCTGATCTATTAATGAGACTTCAGTTTGCAAAGGAGAAAGAAAGTGATCGAATGGAGCTACCAGCTCAGAATGATCGAGACAAACCTAAGCGAGAAACAAAGAAAAGAAGCTGGAATGACGTGCTGTGGGGGTGTCTTCATAAGGTTGGGGAACCTTTTCTAATGAGATGGCCATTGTCTAAGCTCAGGCAAAAAGCTCTCACCACCGTAATGGACCACATACACTATGAGGATGAAAACACTCAGTATATCTGCATTGGACCTGTCAATAAGGGATATAATGGATCCCAATGCTGGGATGTTGCTTTGGCTGTTCAAGCAATCCTTTCTACCAACCTTGTGAATGAATATGGTTCCGTGCTTAAGAAGGCGCACTATTTCATCAAAAATACACAAAACAGCAATGGAGGGTTTGCATCATATGAACTCACAAGATCCTATGCCTGGTTGGAGATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

214

Amino Acids

25.1

Weight (kDa)

8.69

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	462, 475, 612
AcoI	YGGCCR	1 cut(s)	353
AcuI	CTGAAG	2 cut(s)	32, 188
AfiI	CCNNNNNNNGG	4 cut(s)	104, 477, 478, 627
AflII	CTTAAG	1 cut(s)	545
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	170, 500
AjiI	CACGTC	2 cut(s)	143, 304
AjnI	CCWGG	1 cut(s)	626
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	6 cut(s)	125, 241, 248, 294, 367, 380
AluI	AGCT	6 cut(s)	125, 241, 248, 294, 367, 380
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	3 cut(s)	70, 193, 255
AlwI	GGATC	3 cut(s)	462, 475, 612
AoxI	GGCC	1 cut(s)	353
AseI	ATTAAT	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	397, 443
AsuHPI	GGTGA	1 cut(s)	376
AvaII	GGWCC	2 cut(s)	397, 443
BalI	TGGCCA	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	2 cut(s)	29, 345
BciT130I	CCWGG	1 cut(s)	628
BcoDI	GTCTC	3 cut(s)	70, 193, 255
BfrI	CTTAAG	1 cut(s)	545
Bme1390I	CCNGG	1 cut(s)	628
Bme18I	GGWCC	2 cut(s)	397, 443
BmgBI	CACGTC	2 cut(s)	143, 304
BmgT120I	GGNCC	2 cut(s)	397, 443
BmiI	GGNNCC	3 cut(s)	336, 469, 538
BmrFI	CCNGG	1 cut(s)	628
BmsI	GCATC	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	311
Bpu10I	CCTNAGC	3 cut(s)	126, 270, 368
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	44
BsaXI	ACNNNNNCTCC	1 cut(s)	626
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 477, 478, 627
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	421, 487
BseLI	CCNNNNNNNGG	4 cut(s)	104, 477, 478, 627
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	4 cut(s)	140, 263, 382, 440
BseNI	ACTGG	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	477
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	127
BslI	CCNNNNNNNGG	4 cut(s)	104, 477, 478, 627
BsmAI	GTCTC	3 cut(s)	70, 193, 255
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	5 cut(s)	187, 229, 256, 467, 617
Bsp19I	CCATGG	1 cut(s)	44
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	4 cut(s)	139, 262, 381, 439
BspLI	GGNNCC	3 cut(s)	336, 469, 538
BspPI	GGATC	3 cut(s)	462, 475, 612
BspQI	GCTCTTC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	5 cut(s)	187, 229, 256, 467, 617
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	2 cut(s)	25, 111
BstAFI	CTTAAG	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	6 cut(s)	126, 249, 270, 363, 368, 426
BstDSI	CCRYGG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	421, 487
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	5 cut(s)	190, 232, 259, 470, 620
BstMAI	GTCTC	3 cut(s)	70, 193, 255
BstMBI	GATC	5 cut(s)	187, 229, 256, 467, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	628
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	626
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	2 cut(s)	467, 617
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	2 cut(s)	467, 617
BsuRI	GGCC	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	44
BtrI	CACGTC	2 cut(s)	143, 304
BtsCI	GGATG	2 cut(s)	421, 487
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	397, 443
CviAII	CATG	1 cut(s)	45
DdeI	CTNAG	6 cut(s)	126, 249, 270, 363, 368, 426
DpnI	GATC	5 cut(s)	189, 231, 258, 469, 619
DpnII	GATC	5 cut(s)	187, 229, 256, 467, 617
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	25, 111
EarI	CTCTTC	2 cut(s)	25, 111
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	397, 443
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	32, 188
Eco91I	GGTNACC	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	626
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	48
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FatI	CATG	1 cut(s)	44
FauNDI	CATATG	1 cut(s)	604
FokI	GGATG	2 cut(s)	428, 494
FriOI	GRGCYC	1 cut(s)	127
GlaI	GCGC	1 cut(s)	555
GsaI	CCCAGC	1 cut(s)	481
HaeIII	GGCC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HphI	GGTGA	1 cut(s)	376
Hpy188I	TCNGA	5 cut(s)	22, 107, 175, 187, 252
Hpy188III	TCNNGA	3 cut(s)	73, 146, 260
HpyAV	CCTTC	3 cut(s)	7, 17, 544
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	142, 303
HpyCH4V	TGCA	3 cut(s)	212, 438, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	6 cut(s)	126, 249, 270, 363, 368, 426
HpySE526I	ACGT	2 cut(s)	142, 303
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	554
Kzo9I	GATC	5 cut(s)	187, 229, 256, 467, 617
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	9 cut(s)	98, 113, 258, 280, 355, 459, 463, 613, 640
LweI	GCATC	1 cut(s)	608
MaeII	ACGT	2 cut(s)	142, 303
MaeIII	GTNAC	2 cut(s)	38, 155
MalI	GATC	5 cut(s)	189, 231, 258, 469, 619
MboI	GATC	5 cut(s)	187, 229, 256, 467, 617
MboII	GAAGA	3 cut(s)	42, 128, 311
MflI	RGATCY	2 cut(s)	467, 617
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	355
MluCI	AATT	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	3 cut(s)	20, 406, 584
Mox20I	TGGCCA	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	355
MseI	TTAA	2 cut(s)	194, 546
MslI	CAYNNNNRTG	2 cut(s)	56, 392
Msp20I	TGGCCA	1 cut(s)	355
MspCI	CTTAAG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	628
MwoI	GCNNNNNNNGC	1 cut(s)	500
NcoI	CCATGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	5 cut(s)	187, 229, 256, 467, 617
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	3 cut(s)	336, 469, 538
OliI	CACNNNNGTG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	339
PshBI	ATTAAT	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	3 cut(s)	336, 469, 538
PspPI	GGNCC	2 cut(s)	397, 443
PsuI	RGATCY	2 cut(s)	467, 617
RseI	CAYNNNNRTG	2 cut(s)	56, 392
SacI	GAGCTC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	194, 546
Sau3AI	GATC	5 cut(s)	187, 229, 256, 467, 617
Sau96I	GGNCC	2 cut(s)	397, 443
ScrFI	CCNGG	1 cut(s)	628
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	608
SinI	GGWCC	2 cut(s)	397, 443
SmiMI	CAYNNNNRTG	2 cut(s)	56, 392
SmlI	CTYRAG	2 cut(s)	146, 545
SmoI	CTYRAG	2 cut(s)	146, 545
Sse9I	AATT	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	626
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	145, 306
TaqI	TCGA	3 cut(s)	93, 232, 259
TasI	AATT	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	194, 546
Tru9I	TTAA	2 cut(s)	194, 546
TscAI	CASTG	1 cut(s)	117
TspDTI	ATGAA	5 cut(s)	311, 432, 543, 553, 621
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	545
VpaK11BI	GGWCC	2 cut(s)	397, 443
VspI	ATTAAT	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.