Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Forward (+)

18760001 .. 18760309

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTGGAAGCTAAAGATTGCAGAGGGAGGGAATCCATGGCTGCGGACGCTCAACAACCACGTCGGCCAGCAAGTCTGGGAGTTCGATCCCAAGCTCGGAACTCTGGCCGAGCTTAAGGAGGTCGAGAAGGCTTGCGAGCACTACCATAACCACCGCTTCGTTCACAAGCACAGCTCCGATCGGCTCATGCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009555 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010685 GO:0010686 GO:0016043 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0016871 GO:0019742 GO:0019745 GO:0031559 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110

Pfam Domains

Protein Families

Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

65

Amino Acids

7.76

Weight (kDa)

8.93

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	191
AciI	CCGC	2 cut(s)	43, 154
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	2 cut(s)	64, 105
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	4 cut(s)	10, 94, 112, 174
AluI	AGCT	4 cut(s)	10, 94, 112, 174
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	2 cut(s)	64, 105
ApeKI	GCWGC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	27
BfrI	CTTAAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	66, 107
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	2 cut(s)	66, 107
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	85, 178
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	2 cut(s)	43, 154
BspANI	GGCC	2 cut(s)	66, 107
BspPI	GGATC	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	85, 178
BssT1I	CCWWGG	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	68, 133, 137
BstDSI	CCRYGG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	88, 181
BstMBI	GATC	2 cut(s)	85, 178
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	66, 107
BtgI	CCRYGG	1 cut(s)	35
BtrI	CACGTC	1 cut(s)	61
Cac8I	GCNNGC	3 cut(s)	68, 133, 137
CfoI	GCGC	1 cut(s)	192
CseI	GACGC	1 cut(s)	55
CviAII	CATG	2 cut(s)	36, 187
CviJI	RGCY	9 cut(s)	10, 40, 66, 94, 107, 112, 131, 174, 184
CviKI_1	RGCY	9 cut(s)	10, 40, 66, 94, 107, 112, 131, 174, 184
DpnI	GATC	2 cut(s)	87, 180
DpnII	GATC	2 cut(s)	85, 178
EaeI	YGGCCR	2 cut(s)	64, 105
Eco130I	CCWWGG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	39, 190
FaiI	YATR	3 cut(s)	37, 147, 188
FatI	CATG	2 cut(s)	35, 186
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspAI	RTGCGCAY	1 cut(s)	191
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	66, 107
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	39, 190
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	98, 178
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	39, 190
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	85, 178
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	3 cut(s)	61, 80, 89
Lsp1109I	GCAGC	1 cut(s)	27
MaeII	ACGT	1 cut(s)	60
MalI	GATC	2 cut(s)	87, 180
MboI	GATC	2 cut(s)	85, 178
MhlI	GDGCHC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	16, 20, 112
MseI	TTAA	1 cut(s)	114
MspCI	CTTAAG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	85, 178
NlaIII	CATG	2 cut(s)	39, 190
NmeAIII	GCCGAG	1 cut(s)	133
NsbI	TGCGCA	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	42
Ple19I	CGATCG	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	85, 178
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	6 cut(s)	12, 63, 96, 114, 123, 176
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SsiI	CCGC	2 cut(s)	43, 154
StyI	CCWWGG	1 cut(s)	35
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	84, 123
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	1 cut(s)	40
Vha464I	CTTAAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.