Rmu_sc0001548.1_g000031

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001548.1
OG0001409
Physical Location & Seq
Forward (+)
124248 .. 130517
6270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001548.1_g000031.1.cds

Sequence Viewer

Length: 972 bp
atgtggaggctgaaggtttcagaaagaggaagagatggtaatccatggctcacaagtgtgaataatcacatcgggagacaattctgggagttcgacccgaatctcggaacaccggaagagcgtgctcaagtggaaaaagcacgtcttgattttcataacaatcgttttcaattcacacatagttctgatctattaatgagacttcagtttgcaaaggagaaagaaagtgatcgaatggagctaccagctcaggtgaaaataaaaagcgaagaagaaattaatgaagaagtagtaacaaccacattgaggagggggttgagattttactcgactcttcaggctgaggatggtttctggcctgttgactatggcggtcctttgtttcttctacctgggttggttattggattatccgtaacaggggcccttgatgcaatcttgccacacgagcattcaaaggagatccgccgatatctttataaccatcagaacaaagatggtggttggggactgcatatagaagggccaagtacaatgttttgtacagctctgtcctatgtgagtctgagattgctcggagaggagatggacggcggtgatggcgccatggagaaggcaagaaaatggattcttcaccgtggaggagttaccaccatcccatcatggggaaagatgtggctctcatatttcaggcggcggcgcggggcttgtctgatggaggcaggaggcatcttagaccgcttctgggcagcgatcgaggtcggaggagatctgggcagtgacctcacttgcaactgcaaggttctgggcagcgctgcaacctcgtggccggcgactccacccgactgcagattggtctgcccaacccctagcctccttatggcaagcagcgccgcgcctttgccgcttgagcagagttgcagcgtcaacgtccacactttagcgacattacggatttcctcttcagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

323

Amino Acids

36.19

Weight (kDa)

6.33

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 602
AccII CGCG 2 cut(s) 702, 896
AciI CCGC 9 cut(s) 372, 466, 594, 694, 697, 702, 739, 894, 905
AclWI GGATC 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 827
AcuI CTGAAG 4 cut(s) 32, 188, 320, 948
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 2 cut(s) 532, 544
AfeI AGCGCT 1 cut(s) 814
AfiI CCNNNNNNNGG 7 cut(s) 104, 306, 420, 664, 665, 745, 880
AgsI TTSAA 2 cut(s) 170, 456
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 391
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 3 cut(s) 241, 248, 548
AluI AGCT 3 cut(s) 241, 248, 548
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 70, 193
AlwI GGATC 1 cut(s) 457
Aor51HI AGCGCT 1 cut(s) 814
AoxI GGCC 4 cut(s) 356, 423, 524, 827
ApaI GGGCCC 1 cut(s) 427
ApeKI GCWGC 5 cut(s) 749, 810, 815, 888, 921
AseI ATTAAT 2 cut(s) 194, 279
AspLEI GCGC 5 cut(s) 605, 702, 815, 893, 898
AspS9I GGNCC 4 cut(s) 374, 423, 424, 524
AsuHPI GGTGA 3 cut(s) 265, 608, 626
AvaII GGWCC 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 1 cut(s) 427
BauI CACGAG 2 cut(s) 446, 823
Bbv12I GWGCWC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 5 cut(s) 761, 802, 822, 900, 933
BccI CCATC 9 cut(s) 29, 341, 491, 492, 580, 593, 662, 667, 709
BceAI ACGGC 1 cut(s) 607
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 70, 193
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 1 cut(s) 847
BfoI RGCGCY 3 cut(s) 606, 816, 894
BglII AGATCT 1 cut(s) 769
BisI GCNGC 9 cut(s) 695, 698, 750, 811, 816, 889, 894, 905, 922
BlsI GCNGC 9 cut(s) 696, 699, 751, 812, 817, 890, 895, 906, 923
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 4 cut(s) 374, 423, 424, 524
BmiI GGNNCC 3 cut(s) 424, 425, 604
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 2 cut(s) 421, 738
Bpu10I CCTNAGC 2 cut(s) 249, 342
BpuEI CTTGAG 2 cut(s) 111, 929
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 4 cut(s) 44, 392, 606, 637
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 7 cut(s) 104, 306, 420, 664, 665, 745, 880
Bse118I RCCGGY 1 cut(s) 829
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 4 cut(s) 44, 392, 606, 637
BseGI GGATG 2 cut(s) 352, 654
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 7 cut(s) 104, 306, 420, 664, 665, 745, 880
BseMII CTCAG 3 cut(s) 263, 333, 557
BseRI GAGGAG 4 cut(s) 322, 596, 657, 780
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 5 cut(s) 761, 802, 822, 900, 933
Bsh1236I CGCG 2 cut(s) 702, 896
Bsh1285I CGRYCG 1 cut(s) 756
BshFI GGCC 4 cut(s) 358, 425, 526, 829
BshNI GGYRCC 1 cut(s) 602
BsiEI CGRYCG 1 cut(s) 756
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 2 cut(s) 113, 830
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 7 cut(s) 104, 306, 420, 664, 665, 745, 880
BsmAI GTCTC 2 cut(s) 70, 193
BsmFI GGGAC 1 cut(s) 522
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 4 cut(s) 358, 425, 526, 829
Bsp120I GGGCCC 1 cut(s) 423
Bsp1286I GDGCHC 2 cut(s) 127, 427
Bsp1407I TGTACA 1 cut(s) 542
Bsp143I GATC 5 cut(s) 187, 229, 462, 753, 769
Bsp19I CCATGG 2 cut(s) 44, 606
BspACI CCGC 9 cut(s) 372, 466, 594, 694, 697, 702, 739, 894, 905
BspANI GGCC 4 cut(s) 358, 425, 526, 829
BspCNI CTCAG 3 cut(s) 262, 334, 558
BspFNI CGCG 2 cut(s) 702, 896
BspLI GGNNCC 3 cut(s) 424, 425, 604
BspMAI CTGCAG 1 cut(s) 851
BspPI GGATC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 602
BsrFI RCCGGY 1 cut(s) 829
BsrGI TGTACA 1 cut(s) 542
BssAI RCCGGY 1 cut(s) 829
BssECI CCNNGG 4 cut(s) 44, 392, 606, 637
BssMI GATC 5 cut(s) 187, 229, 462, 753, 769
BssNI GRCGYC 1 cut(s) 603
BssSI CACGAG 2 cut(s) 446, 823
BssT1I CCWWGG 2 cut(s) 44, 606
Bst2BI CACGAG 2 cut(s) 446, 823
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 4 cut(s) 25, 111, 339, 967
BstACI GRCGYC 1 cut(s) 603
BstAUI TGTACA 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 123, 831, 886
BstDEI CTNAG 4 cut(s) 249, 342, 566, 733
BstDSI CCRYGG 3 cut(s) 44, 606, 637
BstF5I GGATG 2 cut(s) 352, 654
BstFNI CGCG 2 cut(s) 702, 896
BstH2I RGCGCY 3 cut(s) 606, 816, 894
BstHHI GCGC 5 cut(s) 605, 702, 815, 893, 898
BstKTI GATC 5 cut(s) 190, 232, 465, 756, 772
BstMAI GTCTC 2 cut(s) 70, 193
BstMBI GATC 5 cut(s) 187, 229, 462, 753, 769
BstMCI CGRYCG 1 cut(s) 756
BstMWI GCNNNNNNNGC 6 cut(s) 431, 448, 600, 890, 904, 910
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 847
BstSLI GKGCMC 1 cut(s) 427
BstUI CGCG 2 cut(s) 702, 896
BstV1I GCAGC 5 cut(s) 761, 802, 822, 900, 933
BstX2I RGATCY 2 cut(s) 462, 769
BstYI RGATCY 2 cut(s) 462, 769
BsuRI GGCC 4 cut(s) 358, 425, 526, 829
BtgI CCRYGG 3 cut(s) 44, 606, 637
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 2 cut(s) 352, 654
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 1 cut(s) 784
Cac8I GCNNGC 3 cut(s) 123, 831, 886
CfoI GCGC 5 cut(s) 605, 702, 815, 893, 898
Cfr10I RCCGGY 1 cut(s) 829
Cfr13I GGNCC 4 cut(s) 374, 423, 424, 524
CseI GACGC 1 cut(s) 913
Csp6I GTAC 2 cut(s) 531, 543
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 3 cut(s) 45, 607, 663
CviQI GTAC 2 cut(s) 531, 543
DdeI CTNAG 4 cut(s) 249, 342, 566, 733
DinI GGCGCC 1 cut(s) 604
DpnI GATC 5 cut(s) 189, 231, 464, 755, 771
DpnII GATC 5 cut(s) 187, 229, 462, 753, 769
EaeI YGGCCR 1 cut(s) 827
Eam1104I CTCTTC 4 cut(s) 25, 111, 339, 967
EarI CTCTTC 4 cut(s) 25, 111, 339, 967
EciI GGCGGA 1 cut(s) 455
Eco130I CCWWGG 2 cut(s) 44, 606
Eco24I GRGCYC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 374
Eco47III AGCGCT 1 cut(s) 814
Eco57I CTGAAG 4 cut(s) 32, 188, 320, 948
EcoO109I RGGNCCY 2 cut(s) 423, 424
EcoRII CCWGG 1 cut(s) 391
EcoRV GATATC 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 44, 606
EcoT38I GRGCYC 1 cut(s) 427
EgeI GGCGCC 1 cut(s) 604
EheI GGCGCC 1 cut(s) 604
ErhI CCWWGG 2 cut(s) 44, 606
FaeI CATG 3 cut(s) 48, 610, 666
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 522
FatI CATG 3 cut(s) 44, 606, 662
FauI CCCGC 1 cut(s) 695
Fnu4HI GCNGC 9 cut(s) 695, 698, 750, 811, 816, 889, 894, 905, 922
FokI GGATG 2 cut(s) 359, 641
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 9 cut(s) 695, 698, 750, 811, 816, 889, 894, 905, 922
FspBI CTAG 1 cut(s) 870
GlaI GCGC 5 cut(s) 604, 701, 814, 892, 897
GluI GCNGC 9 cut(s) 695, 698, 750, 811, 816, 889, 894, 905, 922
HaeII RGCGCY 3 cut(s) 606, 816, 894
HaeIII GGCC 4 cut(s) 358, 425, 526, 829
HapII CCGG 2 cut(s) 113, 830
HgaI GACGC 1 cut(s) 913
HhaI GCGC 5 cut(s) 605, 702, 815, 893, 898
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 3 cut(s) 48, 610, 666
Hin6I GCGC 5 cut(s) 603, 700, 813, 891, 896
HinP1I GCGC 5 cut(s) 603, 700, 813, 891, 896
HincII GTYRAC 2 cut(s) 364, 928
HindII GTYRAC 2 cut(s) 364, 928
HinfI GANTC 5 cut(s) 100, 331, 562, 628, 835
HpaII CCGG 2 cut(s) 113, 830
HphI GGTGA 3 cut(s) 265, 608, 626
Hpy166II GTNNAC 3 cut(s) 364, 928, 934
Hpy188I TCNGA 9 cut(s) 22, 107, 187, 489, 567, 578, 714, 764, 967
Hpy188III TCNNGA 2 cut(s) 73, 146
Hpy8I GTNNAC 3 cut(s) 364, 928, 934
HpyAV CCTTC 3 cut(s) 7, 515, 607
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4IV ACGT 2 cut(s) 142, 930
HpyCH4V TGCA 8 cut(s) 212, 434, 514, 792, 798, 818, 849, 921
HpyF10VI GCNNNNNNNGC 6 cut(s) 431, 448, 600, 890, 904, 910
HpyF3I CTNAG 4 cut(s) 249, 342, 566, 733
HpySE526I ACGT 2 cut(s) 142, 930
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 3 cut(s) 48, 610, 666
HspAI GCGC 5 cut(s) 603, 700, 813, 891, 896
KasI GGCGCC 1 cut(s) 602
KroI GCCGGC 1 cut(s) 829
KroNI GCCGGC 1 cut(s) 831
Kzo9I GATC 5 cut(s) 187, 229, 462, 753, 769
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 5 cut(s) 761, 802, 822, 900, 933
LweI GCATC 2 cut(s) 421, 738
MaeI CTAG 1 cut(s) 870
MaeII ACGT 2 cut(s) 142, 930
MaeIII GTNAC 4 cut(s) 292, 415, 646, 779
MalI GATC 5 cut(s) 189, 231, 464, 755, 771
MboI GATC 5 cut(s) 187, 229, 462, 753, 769
MboII GAAGA 9 cut(s) 42, 128, 281, 284, 296, 326, 377, 623, 954
MflI RGATCY 2 cut(s) 462, 769
MhlI GDGCHC 2 cut(s) 127, 427
MluCI AATT 3 cut(s) 80, 170, 276
Mly113I GGCGCC 1 cut(s) 603
MlyI GAGTC 3 cut(s) 325, 571, 829
MmeI TCCRAC 1 cut(s) 742
MroNI GCCGGC 1 cut(s) 829
MseI TTAA 2 cut(s) 194, 279
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 2 cut(s) 113, 830
MspR9I CCNGG 1 cut(s) 393
MteI GCGCNGCGC 1 cut(s) 894
Mva1269I GAATGC 1 cut(s) 451
MvaI CCWGG 1 cut(s) 393
MvnI CGCG 2 cut(s) 702, 896
MwoI GCNNNNNNNGC 6 cut(s) 431, 448, 600, 890, 904, 910
NaeI GCCGGC 1 cut(s) 831
NarI GGCGCC 1 cut(s) 603
NcoI CCATGG 2 cut(s) 44, 606
NdeII GATC 5 cut(s) 187, 229, 462, 753, 769
NgoMIV GCCGGC 1 cut(s) 829
NlaIII CATG 3 cut(s) 48, 610, 666
NlaIV GGNNCC 3 cut(s) 424, 425, 604
NmuCI GTSAC 1 cut(s) 779
OliI CACNNNNGTG 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 830
PctI GAATGC 1 cut(s) 451
PdiI GCCGGC 1 cut(s) 831
PfeI GAWTC 2 cut(s) 100, 628
PkrI GCNGC 9 cut(s) 696, 699, 751, 812, 817, 890, 895, 906, 923
Ple19I CGATCG 1 cut(s) 756
PleI GAGTC 3 cut(s) 325, 570, 829
PluTI GGCGCC 1 cut(s) 606
PpsI GAGTC 3 cut(s) 325, 570, 829
PshBI ATTAAT 2 cut(s) 194, 279
PsiI TTATAA 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 3 cut(s) 424, 425, 604
PspOMI GGGCCC 1 cut(s) 423
PspPI GGNCC 4 cut(s) 374, 423, 424, 524
PstI CTGCAG 1 cut(s) 851
PsuI RGATCY 2 cut(s) 462, 769
PvuI CGATCG 1 cut(s) 756
RsaI GTAC 2 cut(s) 532, 544
RsaNI GTAC 2 cut(s) 531, 543
RseI CAYNNNNRTG 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 194, 279
SatI GCNGC 9 cut(s) 695, 698, 750, 811, 816, 889, 894, 905, 922
Sau3AI GATC 5 cut(s) 187, 229, 462, 753, 769
Sau96I GGNCC 4 cut(s) 374, 423, 424, 524
SchI GAGTC 3 cut(s) 325, 571, 829
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 2 cut(s) 127, 427
SfaNI GCATC 2 cut(s) 421, 738
SfcI CTRYAG 1 cut(s) 847
SfoI GGCGCC 1 cut(s) 604
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 126, 908
SmoI CTYRAG 2 cut(s) 126, 908
Sse9I AATT 3 cut(s) 80, 170, 276
SsiI CCGC 9 cut(s) 372, 466, 594, 694, 697, 702, 739, 894, 905
SspDI GGCGCC 1 cut(s) 602
SspMI CTAG 1 cut(s) 870
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 2 cut(s) 44, 606
TaaI ACNGT 1 cut(s) 638
TaiI ACGT 2 cut(s) 145, 933
TaqI TCGA 4 cut(s) 93, 232, 329, 756
TasI AATT 3 cut(s) 80, 170, 276
TatI WGTACW 2 cut(s) 530, 542
TauI GCSGC 4 cut(s) 697, 700, 896, 907
TfiI GAWTC 2 cut(s) 100, 628
Tru1I TTAA 2 cut(s) 194, 279
Tru9I TTAA 2 cut(s) 194, 279
TscAI CASTG 1 cut(s) 784
TseFI GTSAC 1 cut(s) 779
TseI GCWGC 5 cut(s) 749, 810, 815, 888, 921
Tsp45I GTSAC 1 cut(s) 779
TspDTI ATGAA 2 cut(s) 143, 297
TspGWI ACGGA 2 cut(s) 403, 967
TspRI CASTG 1 cut(s) 784
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 2 cut(s) 194, 279
XspI CTAG 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.