Rmu_sc0008678.1_g000005

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008678.1
OG0001409
Physical Location & Seq
Forward (+)
20549 .. 25776
5228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008678.1_g000005.1.cds

Sequence Viewer

Length: 849 bp
atgtggaagctgaaaattggggcagacacagtaagagaaggtggtgatcatcaatggctgaggagtgtgaacaatcacttgggacgccaagtttgggagtaccatccagagcttgggacccctgaagagcttcagcaaatcgaagatgctcgaaaaggtttatgggacaatcgatttgagaccaagcacagctctgatctcctcatgagaattcagtttgcaaaggagaacccatgtgtgactaatctaccacaactcaaagttagagatgcagaagaggtgacagacgaggtcgtggcaaccacattacgcagggccattaatttttattcaacaatccaggcacatgatggtcattggcctggggattatgggggtcccatgtttcgacttcctggtttgccgagcaagaaacgaagcccagaaatgccggagaagttgccggcgttgaagaacacggcaaagcagaaggaaaactcatgcagcttaatcgatgaccggagtcgccggaattcgttgaaactcgccggagcagacttggagcttcaggtcttcgattctccttcttcgttcaatgcatggacaatcagaggccacgggcgtgacgaagatggcgagacggagagaatgccagtggtccgccgctgtgctgtggccggacggagtagcgccagtcggatcctctttgctggtctccgggtcgcgtcagtcagagaaatctggttttctctctcggtcctactggatggatcatcggattacatgcctacttataggctttttcaaataatattcgatggttgtgatcagtcggtggatttatggatggctaggatctcgccacattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

282

Amino Acids

32.13

Weight (kDa)

6.72

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AccII CGCG 1 cut(s) 704
AciI CCGC 2 cut(s) 640, 643
AclWI GGATC 4 cut(s) 673, 686, 757, 842
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 2 cut(s) 210, 511
AcuI CTGAAG 3 cut(s) 116, 144, 530
AcyI GRCGYC 1 cut(s) 85
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 94, 113
AgsI TTSAA 5 cut(s) 333, 451, 520, 574, 785
AjnI CCWGG 3 cut(s) 339, 361, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AleI CACNNNNGTG 1 cut(s) 600
AluBI AGCT 6 cut(s) 10, 112, 130, 192, 486, 544
AluI AGCT 6 cut(s) 10, 112, 130, 192, 486, 544
Alw26I GTCTC 3 cut(s) 173, 611, 698
AlwI GGATC 4 cut(s) 673, 686, 757, 842
AoxI GGCC 4 cut(s) 315, 359, 592, 654
ApeKI GCWGC 1 cut(s) 483
ApoI RAATTY 2 cut(s) 210, 511
ArsI GACNNNNNNTTYG 4 cut(s) 75, 107, 158, 190
AseI ATTAAT 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 671
AspS9I GGNCC 5 cut(s) 117, 315, 377, 637, 736
AsuC2I CCSGG 1 cut(s) 698
AsuHPI GGTGA 2 cut(s) 56, 292
AvaII GGWCC 4 cut(s) 117, 377, 637, 736
BamHI GGATCC 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 544
BbvCI CCTCAGC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 495
BccI CCATC 6 cut(s) 111, 344, 605, 740, 791, 820
BceAI ACGGC 1 cut(s) 474
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 3 cut(s) 341, 363, 396
BclI TGATCA 2 cut(s) 46, 805
BcnI CCSGG 1 cut(s) 698
BcoDI GTCTC 3 cut(s) 173, 611, 698
BfaI CTAG 1 cut(s) 831
BfoI RGCGCY 1 cut(s) 672
BisI GCNGC 2 cut(s) 484, 643
BlsI GCNGC 2 cut(s) 485, 644
Bme1390I CCNGG 4 cut(s) 341, 363, 396, 698
Bme18I GGWCC 4 cut(s) 117, 377, 637, 736
BmgT120I GGNCC 5 cut(s) 117, 315, 377, 637, 736
BmiI GGNNCC 5 cut(s) 118, 119, 378, 379, 680
BmrFI CCNGG 4 cut(s) 341, 363, 396, 698
BmsI GCATC 2 cut(s) 136, 259
BoxI GACNNNNGTC 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 544
Bpu10I CCTNAGC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 698
Bsa29I ATCGAT 2 cut(s) 172, 492
BsaHI GRCGYC 1 cut(s) 85
BsaI GGTCTC 2 cut(s) 173, 698
BsaJI CCNNGG 2 cut(s) 362, 595
BsaWI WCCGGW 1 cut(s) 498
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 113
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 3 cut(s) 632, 672, 747
BseBI CCWGG 3 cut(s) 341, 363, 396
BseCI ATCGAT 2 cut(s) 172, 492
BseDI CCNNGG 2 cut(s) 362, 595
BseGI GGATG 3 cut(s) 103, 751, 831
BseLI CCNNNNNNNGG 2 cut(s) 94, 113
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 3 cut(s) 632, 672, 747
BseRI GAGGAG 2 cut(s) 76, 191
BseXI GCAGC 1 cut(s) 495
Bsh1236I CGCG 1 cut(s) 704
BshFI GGCC 4 cut(s) 317, 361, 594, 656
BshVI ATCGAT 2 cut(s) 172, 492
BsiSI CCGG 7 cut(s) 431, 443, 499, 508, 528, 657, 697
BslFI GGGAC 4 cut(s) 96, 130, 179, 363
BslI CCNNNNNNNGG 2 cut(s) 94, 113
BsmAI GTCTC 3 cut(s) 173, 611, 698
BsmBI CGTCTC 1 cut(s) 611
BsmFI GGGAC 4 cut(s) 96, 130, 179, 363
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 4 cut(s) 317, 361, 594, 656
Bso31I GGTCTC 2 cut(s) 173, 698
Bsp143I GATC 6 cut(s) 46, 196, 678, 749, 805, 834
BspACI CCGC 2 cut(s) 640, 643
BspANI GGCC 4 cut(s) 317, 361, 594, 656
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 2 cut(s) 172, 492
BspFNI CGCG 1 cut(s) 704
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 5 cut(s) 118, 119, 378, 379, 680
BspPI GGATC 4 cut(s) 673, 686, 757, 842
BspQI GCTCTTC 1 cut(s) 120
BspTNI GGTCTC 2 cut(s) 173, 698
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 3 cut(s) 632, 672, 747
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 362, 595
BssMI GATC 6 cut(s) 46, 196, 678, 749, 805, 834
BssNI GRCGYC 1 cut(s) 85
Bst2UI CCWGG 3 cut(s) 341, 363, 396
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 120, 270
BstACI GRCGYC 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 595
BstF5I GGATG 3 cut(s) 103, 751, 831
BstFNI CGCG 1 cut(s) 704
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 6 cut(s) 49, 199, 681, 752, 808, 837
BstMAI GTCTC 3 cut(s) 173, 611, 698
BstMBI GATC 6 cut(s) 46, 196, 678, 749, 805, 834
BstNI CCWGG 3 cut(s) 341, 363, 396
BstNSI RCATGY 1 cut(s) 766
BstPAI GACNNNNGTC 1 cut(s) 501
BstSCI CCNGG 4 cut(s) 339, 361, 394, 696
BstUI CGCG 1 cut(s) 704
BstV1I GCAGC 1 cut(s) 495
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 2 cut(s) 678, 834
BstYI RGATCY 2 cut(s) 678, 834
Bsu15I ATCGAT 2 cut(s) 172, 492
BsuRI GGCC 4 cut(s) 317, 361, 594, 656
BsuTUI ATCGAT 2 cut(s) 172, 492
BtgI CCRYGG 1 cut(s) 595
BtsCI GGATG 3 cut(s) 103, 751, 831
BtsIMutI CAGTG 1 cut(s) 639
Cac8I GCNNGC 1 cut(s) 444
CciI TCATGA 1 cut(s) 204
CfoI GCGC 1 cut(s) 671
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 5 cut(s) 117, 315, 377, 637, 736
ClaI ATCGAT 2 cut(s) 172, 492
CseI GACGC 2 cut(s) 93, 693
Csp6I GTAC 1 cut(s) 100
CviAII CATG 7 cut(s) 205, 234, 347, 382, 480, 579, 763
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 59
DpnI GATC 6 cut(s) 48, 198, 680, 751, 807, 836
DpnII GATC 6 cut(s) 46, 196, 678, 749, 805, 834
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 2 cut(s) 120, 270
EarI CTCTTC 2 cut(s) 120, 270
EciI GGCGGA 1 cut(s) 629
Eco31I GGTCTC 2 cut(s) 173, 698
Eco47I GGWCC 4 cut(s) 117, 377, 637, 736
Eco57I CTGAAG 3 cut(s) 116, 144, 530
EcoO109I RGGNCCY 2 cut(s) 117, 377
EcoRI GAATTC 2 cut(s) 210, 511
EcoRII CCWGG 3 cut(s) 339, 361, 394
EcoT22I ATGCAT 1 cut(s) 580
Esp3I CGTCTC 1 cut(s) 611
FaeI CATG 7 cut(s) 208, 237, 350, 385, 483, 582, 766
FaqI GGGAC 4 cut(s) 96, 130, 179, 363
FatI CATG 7 cut(s) 204, 233, 346, 381, 479, 578, 762
FbaI TGATCA 2 cut(s) 46, 805
Fnu4HI GCNGC 2 cut(s) 484, 643
FokI GGATG 3 cut(s) 90, 758, 838
Fsp4HI GCNGC 2 cut(s) 484, 643
FspBI CTAG 1 cut(s) 831
GlaI GCGC 1 cut(s) 670
GluI GCNGC 2 cut(s) 484, 643
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 4 cut(s) 317, 361, 594, 656
HapII CCGG 7 cut(s) 431, 443, 499, 508, 528, 657, 697
HgaI GACGC 2 cut(s) 93, 693
HhaI GCGC 1 cut(s) 671
Hin1I GRCGYC 1 cut(s) 85
Hin1II CATG 7 cut(s) 208, 237, 350, 385, 483, 582, 766
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HinfI GANTC 2 cut(s) 502, 557
HpaII CCGG 7 cut(s) 431, 443, 499, 508, 528, 657, 697
HphI GGTGA 2 cut(s) 56, 292
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 5 cut(s) 196, 590, 678, 713, 757
Hpy188III TCNNGA 2 cut(s) 107, 205
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 32, 463, 573
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 221, 272, 483, 578
HpyF3I CTNAG 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 85
Hsp92II CATG 7 cut(s) 208, 237, 350, 385, 483, 582, 766
HspAI GCGC 1 cut(s) 669
KflI GGGWCCC 2 cut(s) 117, 377
KroI GCCGGC 1 cut(s) 442
KroNI GCCGGC 1 cut(s) 444
Ksp22I TGATCA 2 cut(s) 46, 805
Kzo9I GATC 6 cut(s) 46, 196, 678, 749, 805, 834
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 530, 541
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 2 cut(s) 136, 259
MaeI CTAG 1 cut(s) 831
MaeIII GTNAC 3 cut(s) 238, 280, 602
MalI GATC 6 cut(s) 48, 198, 680, 751, 807, 836
MboI GATC 6 cut(s) 46, 196, 678, 749, 805, 834
MboII GAAGA 7 cut(s) 137, 155, 287, 463, 544, 558, 620
MflI RGATCY 2 cut(s) 678, 834
MluCI AATT 4 cut(s) 15, 210, 322, 511
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 6 cut(s) 54, 212, 271, 283, 584, 692
Mph1103I ATGCAT 1 cut(s) 580
MroNI GCCGGC 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 321, 488
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 1 cut(s) 645
MspI CCGG 7 cut(s) 431, 443, 499, 508, 528, 657, 697
MspR9I CCNGG 4 cut(s) 341, 363, 396, 698
Mva1269I GAATGC 1 cut(s) 633
MvaI CCWGG 3 cut(s) 341, 363, 396
MvnI CGCG 1 cut(s) 704
NaeI GCCGGC 1 cut(s) 444
NciI CCSGG 1 cut(s) 698
NdeII GATC 6 cut(s) 46, 196, 678, 749, 805, 834
NgoMIV GCCGGC 1 cut(s) 442
NlaIII CATG 7 cut(s) 208, 237, 350, 385, 483, 582, 766
NlaIV GGNNCC 5 cut(s) 118, 119, 378, 379, 680
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 3 cut(s) 238, 280, 602
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 1 cut(s) 766
OliI CACNNNNGTG 1 cut(s) 600
PagI TCATGA 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 2 cut(s) 603, 612
PctI GAATGC 1 cut(s) 633
PdiI GCCGGC 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 557
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 2 cut(s) 485, 644
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
PpuMI RGGWCCY 2 cut(s) 117, 377
PshAI GACNNNNGTC 1 cut(s) 501
PshBI ATTAAT 1 cut(s) 321
Psp5II RGGWCCY 2 cut(s) 117, 377
Psp6I CCWGG 3 cut(s) 339, 361, 394
PspGI CCWGG 3 cut(s) 339, 361, 394
PspN4I GGNNCC 5 cut(s) 118, 119, 378, 379, 680
PspPI GGNCC 5 cut(s) 117, 315, 377, 637, 736
PspPPI RGGWCCY 2 cut(s) 117, 377
PsuI RGATCY 2 cut(s) 678, 834
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 600
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 321, 488
SatI GCNGC 2 cut(s) 484, 643
Sau3AI GATC 6 cut(s) 46, 196, 678, 749, 805, 834
Sau96I GGNCC 5 cut(s) 117, 315, 377, 637, 736
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 4 cut(s) 341, 363, 396, 698
SfaNI GCATC 2 cut(s) 136, 259
SinI GGWCC 4 cut(s) 117, 377, 637, 736
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 4 cut(s) 15, 210, 322, 511
SsiI CCGC 2 cut(s) 640, 643
SspI AATATT 1 cut(s) 792
SspMI CTAG 1 cut(s) 831
StyD4I CCNGG 4 cut(s) 339, 361, 394, 696
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 7 cut(s) 141, 151, 172, 388, 492, 555, 795
TaqII GACCGA 1 cut(s) 724
TasI AATT 4 cut(s) 15, 210, 322, 511
TauI GCSGC 1 cut(s) 645
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 2 cut(s) 321, 488
Tru9I TTAA 2 cut(s) 321, 488
TscAI CASTG 1 cut(s) 639
TseFI GTSAC 3 cut(s) 238, 280, 602
TseI GCWGC 1 cut(s) 483
Tsp45I GTSAC 3 cut(s) 238, 280, 602
TspGWI ACGGA 2 cut(s) 635, 676
TspRI CASTG 1 cut(s) 639
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 4 cut(s) 117, 377, 637, 736
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 2 cut(s) 210, 511
XceI RCATGY 1 cut(s) 766
XcmI CCANNNNNNNNNTGG 2 cut(s) 110, 347
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 831
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.