Rh4DG002100

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001409
Physical Location & Seq
Forward (+)
465350 .. 465577
228 bp
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UTR
Exon/CDS
Intron
Rh4DG002100.1

Sequence Viewer

Length: 228 bp
ATGTGGAAGCTGAAGATTGCGGAGGGAGGACCCTGGCTGAGGACACTAAACAACCACGTGGGTCGACAACACTGGGAGTTTGATCCAGATGCCGGAACACCAGAAGAACGAGCCGAAGTGGAGAGAGTTCGTGAGGAGTTTACGAGAAACCGCTTTCGGATCAAACAAAGTGCTGATCTTTTGATGAGAATGCAGGTATCGGTCTTTTATATATTATGCCACATATAA

Protein Analysis

75

Amino Acids

9.04

Weight (kDa)

7.98

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccI GTMKAC 1 cut(s) 64
AciI CCGC 2 cut(s) 20, 151
AclWI GGATC 2 cut(s) 77, 167
AcuI CTGAAG 1 cut(s) 32
AcvI CACGTG 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 39, 92
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AlwI GGATC 2 cut(s) 77, 167
AspS9I GGNCC 1 cut(s) 29
AvaII GGWCC 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 34
BfuAI ACCTGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 92
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 39, 92
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 39, 92
BsmI GAATGC 1 cut(s) 195
Bsp143I GATC 3 cut(s) 82, 159, 175
BspACI CCGC 2 cut(s) 20, 151
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 2 cut(s) 77, 167
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 3 cut(s) 82, 159, 175
Bst2UI CCWGG 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 38
BstENI CCTNNNNNAGG 1 cut(s) 37
BstKTI GATC 3 cut(s) 85, 162, 178
BstMBI GATC 3 cut(s) 82, 159, 175
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 29
CviJI RGCY 3 cut(s) 10, 37, 113
CviKI_1 RGCY 3 cut(s) 10, 37, 113
DdeI CTNAG 1 cut(s) 38
DpnI GATC 3 cut(s) 84, 161, 177
DpnII GATC 3 cut(s) 82, 159, 175
Eco47I GGWCC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 32
Eco72I CACGTG 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 32
FaiI YATR 5 cut(s) 210, 212, 217, 224, 226
FblI GTMKAC 1 cut(s) 64
HapII CCGG 1 cut(s) 93
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 2 cut(s) 65, 141
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 86, 131
Hpy8I GTNNAC 2 cut(s) 65, 141
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 57
Kzo9I GATC 3 cut(s) 82, 159, 175
LpnPI CCDG 7 cut(s) 19, 46, 58, 99, 106, 114, 179
LweI GCATC 1 cut(s) 79
MaeII ACGT 1 cut(s) 57
MalI GATC 3 cut(s) 84, 161, 177
MboI GATC 3 cut(s) 82, 159, 175
MboII GAAGA 2 cut(s) 25, 116
MnlI CCTC 4 cut(s) 16, 20, 33, 127
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 34
NdeII GATC 3 cut(s) 82, 159, 175
NlaIV GGNNCC 1 cut(s) 31
PctI GAATGC 1 cut(s) 195
PmaCI CACGTG 1 cut(s) 58
PmlI CACGTG 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 32
PspCI CACGTG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 29
PspPPI RGGWCCY 1 cut(s) 29
SalI GTCGAC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 82, 159, 175
Sau96I GGNCC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 34
SetI ASST 3 cut(s) 12, 60, 198
SfaNI GCATC 1 cut(s) 79
SinI GGWCC 1 cut(s) 29
SsiI CCGC 2 cut(s) 20, 151
StyD4I CCNGG 1 cut(s) 32
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 64
TaqII GACCGA 1 cut(s) 190
TscAI CASTG 1 cut(s) 77
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 29
XagI CCTNNNNNAGG 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.