Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008546.1

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Forward (+)

54550 .. 56345

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008546.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgtggaggctgaaggtttcagaaggaggaagagatggtaatccatggctcacaagtgtgaataatcacatcgggagacaattctgggagttcgacccgaatctcggaacacaggaagagcgagctcaagtggaaaaagcacgtcttaagtttcataacaatcgttttcgatccaaacatagttctgatctattaatgagacttcagtttgcaaaggagaaagaaagtgatcgaatggagctaccagctcaggtgaaaataaaaagtgaagaagaaattaatgaagaagtagtagcaaccacattgaggagggggttgagattttactcgactcttcaggctgaggatggtttatggcctgatgaccttggcggtccattgtttcttctacctggcttgttgtcggatgacctcctggacatcacagacggcgtcaccatccaggtgaaggctcagctgattggattctcagcgatgcgcggcgagctagcaggaaaccatggaagctcatcgagctccactttgaacccttcgtcgacgaatctagcagcttctaaactgctccacatcgtggcctggttccatccggcaacagaaacgccgccgtcaaagcttgatcgagcccggaggagggacgtccacactttttctggccttcaacccgaaagccactataagaacatgaagaagaagaaggagagtttatccttcgccacataccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

241

Amino Acids

27.3

Weight (kDa)

8.75

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	639
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	536
AccII	CGCG	1 cut(s)	480
AciI	CCGC	3 cut(s)	372, 480, 602
AclWI	GGATC	1 cut(s)	165
AcuI	CTGAAG	3 cut(s)	32, 188, 320
AcyI	GRCGYC	2 cut(s)	432, 636
AdeI	CACNNNGTG	1 cut(s)	571
AfiI	CCNNNNNNNGG	6 cut(s)	104, 306, 448, 571, 630, 631
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	526, 659
AjiI	CACGTC	1 cut(s)	143
AjnI	CCWGG	4 cut(s)	391, 414, 441, 575
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	9 cut(s)	125, 241, 248, 457, 487, 507, 516, 551, 613
AluI	AGCT	9 cut(s)	125, 241, 248, 457, 487, 507, 516, 551, 613
Alw21I	GWGCWC	2 cut(s)	127, 518
Alw26I	GTCTC	2 cut(s)	70, 193
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	3 cut(s)	356, 573, 652
ApeKI	GCWGC	1 cut(s)	548
AseI	ATTAAT	2 cut(s)	194, 279
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	3 cut(s)	265, 427, 457
AsuNHI	GCTAGC	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	3 cut(s)	127, 518, 625
Bbv12I	GWGCWC	2 cut(s)	127, 518
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	4 cut(s)	29, 341, 446, 591
BceAI	ACGGC	2 cut(s)	445, 589
BciT130I	CCWGG	4 cut(s)	393, 416, 443, 577
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	70, 193
BfaI	CTAG	2 cut(s)	488, 545
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	3 cut(s)	481, 549, 602
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	3 cut(s)	482, 550, 603
Bme1390I	CCNGG	5 cut(s)	393, 416, 443, 577, 625
Bme18I	GGWCC	1 cut(s)	374
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	5 cut(s)	393, 416, 443, 577, 625
BmsI	GCATC	1 cut(s)	465
BmtI	GCTAGC	1 cut(s)	491
Bpu10I	CCTNAGC	2 cut(s)	249, 342
Bpu1102I	GCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	39
BsaHI	GRCGYC	2 cut(s)	432, 636
BsaJI	CCNNGG	3 cut(s)	44, 367, 499
Bsc4I	CCNNNNNNNGG	6 cut(s)	104, 306, 448, 571, 630, 631
Bse1I	ACTGG	1 cut(s)	721
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	4 cut(s)	393, 416, 443, 577
BseDI	CCNNGG	3 cut(s)	44, 367, 499
BseGI	GGATG	4 cut(s)	352, 412, 438, 583
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	6 cut(s)	104, 306, 448, 571, 630, 631
BseMII	CTCAG	4 cut(s)	263, 333, 467, 483
BseNI	ACTGG	1 cut(s)	721
BseRI	GAGGAG	2 cut(s)	322, 643
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	358, 575, 654
BsiHKAI	GWGCWC	2 cut(s)	127, 518
BsiSI	CCGG	2 cut(s)	587, 625
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	6 cut(s)	104, 306, 448, 571, 630, 631
BsmAI	GTCTC	2 cut(s)	70, 193
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	3 cut(s)	358, 575, 654
Bsp1286I	GDGCHC	3 cut(s)	127, 518, 625
Bsp143I	GATC	4 cut(s)	170, 187, 229, 616
Bsp1720I	GCTNAGC	1 cut(s)	453
Bsp19I	CCATGG	2 cut(s)	44, 499
BspACI	CCGC	3 cut(s)	372, 480, 602
BspANI	GGCC	3 cut(s)	358, 575, 654
BspCNI	CTCAG	4 cut(s)	262, 334, 466, 482
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	581
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	721
BssECI	CCNNGG	3 cut(s)	44, 367, 499
BssMI	GATC	4 cut(s)	170, 187, 229, 616
BssNI	GRCGYC	2 cut(s)	432, 636
BssT1I	CCWWGG	3 cut(s)	44, 367, 499
Bst2UI	CCWGG	4 cut(s)	393, 416, 443, 577
Bst6I	CTCTTC	3 cut(s)	25, 111, 339
BstACI	GRCGYC	2 cut(s)	432, 636
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	123, 485, 489
BstDEI	CTNAG	4 cut(s)	249, 342, 453, 469
BstDSI	CCRYGG	2 cut(s)	44, 499
BstF5I	GGATG	4 cut(s)	352, 412, 438, 583
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	4 cut(s)	173, 190, 232, 619
BstMAI	GTCTC	2 cut(s)	70, 193
BstMBI	GATC	4 cut(s)	170, 187, 229, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	484, 513, 610
BstNI	CCWGG	4 cut(s)	393, 416, 443, 577
BstSCI	CCNGG	5 cut(s)	391, 414, 441, 575, 623
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	560
BsuRI	GGCC	3 cut(s)	358, 575, 654
BtgI	CCRYGG	2 cut(s)	44, 499
BtgZI	GCGATG	1 cut(s)	488
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	4 cut(s)	352, 412, 438, 583
Cac8I	GCNNGC	3 cut(s)	123, 485, 489
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	421
CviAII	CATG	3 cut(s)	45, 500, 682
DdeI	CTNAG	4 cut(s)	249, 342, 453, 469
DpnI	GATC	4 cut(s)	172, 189, 231, 618
DpnII	GATC	4 cut(s)	170, 187, 229, 616
DraIII	CACNNNGTG	1 cut(s)	571
Eam1104I	CTCTTC	3 cut(s)	25, 111, 339
EarI	CTCTTC	3 cut(s)	25, 111, 339
Ecl136II	GAGCTC	2 cut(s)	125, 516
Eco130I	CCWWGG	3 cut(s)	44, 367, 499
Eco24I	GRGCYC	3 cut(s)	127, 518, 625
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	2 cut(s)	125, 516
Eco57I	CTGAAG	3 cut(s)	32, 188, 320
EcoICRI	GAGCTC	2 cut(s)	125, 516
EcoRII	CCWGG	4 cut(s)	391, 414, 441, 575
EcoT14I	CCWWGG	3 cut(s)	44, 367, 499
EcoT38I	GRGCYC	3 cut(s)	127, 518, 625
ErhI	CCWWGG	3 cut(s)	44, 367, 499
FaeI	CATG	3 cut(s)	48, 503, 685
FaiI	YATR	8 cut(s)	46, 156, 180, 355, 501, 675, 683, 718
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	3 cut(s)	44, 499, 681
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	3 cut(s)	481, 549, 602
FokI	GGATG	4 cut(s)	359, 419, 425, 570
FriOI	GRGCYC	3 cut(s)	127, 518, 625
Fsp4HI	GCNGC	3 cut(s)	481, 549, 602
FspBI	CTAG	2 cut(s)	488, 545
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	3 cut(s)	481, 549, 602
HaeIII	GGCC	3 cut(s)	358, 575, 654
HapII	CCGG	2 cut(s)	587, 625
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	480
Hin1I	GRCGYC	2 cut(s)	432, 636
Hin1II	CATG	3 cut(s)	48, 503, 685
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	4 cut(s)	100, 331, 465, 541
HpaII	CCGG	2 cut(s)	587, 625
HphI	GGTGA	3 cut(s)	265, 427, 457
Hpy166II	GTNNAC	2 cut(s)	537, 640
Hpy188I	TCNGA	4 cut(s)	22, 107, 187, 406
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	2 cut(s)	537, 640
Hpy99I	CGWCG	2 cut(s)	538, 541
HpyAV	CCTTC	7 cut(s)	7, 17, 442, 540, 665, 688, 718
HpyCH4IV	ACGT	2 cut(s)	142, 636
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	484, 513, 610
HpyF3I	CTNAG	4 cut(s)	249, 342, 453, 469
HpySE526I	ACGT	2 cut(s)	142, 636
Hsp92I	GRCGYC	2 cut(s)	432, 636
Hsp92II	CATG	3 cut(s)	48, 503, 685
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	170, 187, 229, 616
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	3 cut(s)	238, 521, 567
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	488, 545
MaeII	ACGT	2 cut(s)	142, 636
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	4 cut(s)	172, 189, 231, 618
MboI	GATC	4 cut(s)	170, 187, 229, 616
MhlI	GDGCHC	3 cut(s)	127, 518, 625
MluCI	AATT	2 cut(s)	80, 276
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	7 cut(s)	20, 300, 303, 337, 422, 621, 624
MseI	TTAA	3 cut(s)	147, 194, 279
MslI	CAYNNNNRTG	2 cut(s)	56, 443
MspA1I	CMGCKG	1 cut(s)	457
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	2 cut(s)	587, 625
MspR9I	CCNGG	5 cut(s)	393, 416, 443, 577, 625
MvaI	CCWGG	4 cut(s)	393, 416, 443, 577
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	3 cut(s)	484, 513, 610
NciI	CCSGG	1 cut(s)	625
NcoI	CCATGG	2 cut(s)	44, 499
NdeII	GATC	4 cut(s)	170, 187, 229, 616
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	3 cut(s)	48, 503, 685
NlaIV	GGNNCC	1 cut(s)	581
NmuCI	GTSAC	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	111
PfeI	GAWTC	3 cut(s)	100, 465, 541
PflFI	GACNNNGTC	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	571
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	3 cut(s)	482, 550, 603
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PshBI	ATTAAT	2 cut(s)	194, 279
Psp124BI	GAGCTC	2 cut(s)	127, 518
Psp6I	CCWGG	4 cut(s)	391, 414, 441, 575
PspGI	CCWGG	4 cut(s)	391, 414, 441, 575
PspN4I	GGNNCC	1 cut(s)	581
PspPI	GGNCC	1 cut(s)	374
PsyI	GACNNNGTC	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	457
RseI	CAYNNNNRTG	2 cut(s)	56, 443
SacI	GAGCTC	2 cut(s)	127, 518
SalI	GTCGAC	1 cut(s)	535
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	147, 194, 279
SatI	GCNGC	3 cut(s)	481, 549, 602
Sau3AI	GATC	4 cut(s)	170, 187, 229, 616
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	5 cut(s)	393, 416, 443, 577, 625
SduI	GDGCHC	3 cut(s)	127, 518, 625
SfaNI	GCATC	1 cut(s)	465
SgrDI	CGTCGACG	1 cut(s)	535
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	56, 443
SmlI	CTYRAG	2 cut(s)	126, 146
SmoI	CTYRAG	2 cut(s)	126, 146
Sse9I	AATT	2 cut(s)	80, 276
SsiI	CCGC	3 cut(s)	372, 480, 602
SspMI	CTAG	2 cut(s)	488, 545
SstI	GAGCTC	2 cut(s)	127, 518
StyD4I	CCNGG	5 cut(s)	391, 414, 441, 575, 623
StyI	CCWWGG	3 cut(s)	44, 367, 499
TaiI	ACGT	2 cut(s)	145, 639
TaqI	TCGA	7 cut(s)	93, 169, 232, 329, 512, 536, 619
TasI	AATT	2 cut(s)	80, 276
TauI	GCSGC	2 cut(s)	483, 604
TfiI	GAWTC	3 cut(s)	100, 465, 541
Tru1I	TTAA	3 cut(s)	147, 194, 279
Tru9I	TTAA	3 cut(s)	147, 194, 279
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	3 cut(s)	143, 297, 698
Tth111I	GACNNNGTC	1 cut(s)	431
Van91I	CCANNNNNTGG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	374
VspI	ATTAAT	2 cut(s)	194, 279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XmiI	GTMKAC	1 cut(s)	536
XspI	CTAG	2 cut(s)	488, 545
ZraI	GACGTC	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.