Rh2AG466900

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001409
Physical Location & Seq
Reverse (-)
68716659 .. 68723427
6769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG466900.1

Sequence Viewer

Length: 1584 bp
ATGTGGAAGCTGAAAATTGGGGCAGACACGGTAAGAGAAGGTGGTGATCATCAATGCCTGAGGAGTGTGAACAATCACTTGGGACGCCAAGTTTGGGAGTACCATCCAGAGCTTGGGACCCCTGAAGAGCTTCAGCAAATCGAAGATGCTCGAAAAGGTTTCTGGGACAATCGATTCGAGACCAAGCACAGCTCTGATCTCCTCATGAGAATTCAGTTTGCAAAGGAGAACCCATGTGGGACTAATCTACCACAACTCAAAGTTAGATATGCAGAAGAGGTGACAGAAGAGGTCGTAGCAACCACATTACGCAGGGCCATTAATTTTTATTCAACAATCCAGGCACATGATGGTCATTGGCCTGGGGATTATGGGGGTCCCATGTTTCTACTTCCTGGTTTGGTTATTACACTTTCAATTACAGGAGCTCTAAATGCTGTGTTATCCATAGAGCATCAATGGGAGATGTGTAGATATCTCTATAATCATCAGAATAAAGATGGGGAATGGGGTCTACATATTGAGGGCCCAAGTACCATGTTTGGTACTGCACTAAATTATGTTAGTTTGAGGTTGCTTGGAGAAGGTGCTGATGATGGACAAGGGGCAATGGAAATAGCACGAAAATGGATATTAGACCATGGTGGTGCGACTGCAATCACTTCATGGGGGAAGATGTGGCTTTCAGTACTTGGGGCATATGAATGGTCTGGAAATAATCCACTACCGCCAGAAGTATGGCTATGTCCTTACTCTCTCCCAGTTCATCCAGGAAGGATGTGGTGTCATTGTCGAATGGTGTATTTGCCTATGTCTTATCTGTATGGGAAGAGATTCGTTGGACCAATTACACCTACAATCCAGTCATTGAGAAAGGAGCTATATACAGTCCCATACCATGAAGTTGATTGGAATGAAGCTCGTAATCTATGTGCAAAGGAAGATCTATACTATCCACACCCAATGGTTCAGGATATTCTGTGGGCTTCTCTTCACTATGTACTTGAACCAGTTTTTATGCGTTGGCCGGCAAAAAGATTGAGGGAGAAGGCTTTGGACACTGTTATGCAGCACATTCACTATGAAGATGAAAATACTCGGTATATCTGCATTGGCCCTGTTAATAAGGTGTTAAATATGCTCTGTTGTTGGGCGGAGGATCCAAACTCAGAGGCATTCAAGTTGCATCTTCCAAGACTATATGATTATTTGTGGATCGCTGAAGATGGCATGAAAATGCAGGGCTACAATGGGAGCCAGGCATGGGATACTTCTTTTGCTGTGCAAGCAATAATATCTACTAACCTTGCTAAAGAATATGGACCTACTTTAAGAAAAGCACATGAATACATAAAAGATTCTCAGGTCTTAGAAGATTGTCCTGGTGATCTAAACTTTTGGTATCGACACATTTCAAAAGGTGCTTGGCCATTCTCAACAGCAGATCATGGATGGCCTATCTCTGACTGCACGGCGGAAGGACTGAAGGCTGCCTTATTATTATCAACACTTCCAACAGAAACAGTTGGGGAATCATTGGATATGAAGAAATTATATGATGCCGTTAATGTTACCCTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

527

Amino Acids

60.35

Weight (kDa)

5.72

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 105 - 405 8.2e-37 Squalene-hopene cyclase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 1 cut(s) 514
AciI CCGC 3 cut(s) 728, 1154, 1475
AclWI GGATC 3 cut(s) 1154, 1167, 1223
AcoI YGGCCR 2 cut(s) 1025, 1427
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 4 cut(s) 116, 144, 1242, 1505
AcyI GRCGYC 1 cut(s) 85
AfaI GTAC 5 cut(s) 101, 535, 547, 690, 1002
AfiI CCNNNNNNNGG 3 cut(s) 94, 113, 1264
AgsI TTSAA 5 cut(s) 333, 417, 1007, 1180, 1416
AjnI CCWGG 6 cut(s) 339, 361, 394, 769, 1257, 1381
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 7 cut(s) 10, 112, 130, 192, 428, 880, 920
AluI AGCT 7 cut(s) 10, 112, 130, 192, 428, 880, 920
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 3 cut(s) 1154, 1167, 1223
AoxI GGCC 7 cut(s) 315, 359, 526, 1025, 1114, 1427, 1454
ApaI GGGCCC 1 cut(s) 530
ApeKI GCWGC 2 cut(s) 1069, 1490
ApoI RAATTY 1 cut(s) 210
ArsI GACNNNNNNTTYG 4 cut(s) 75, 107, 158, 190
AseI ATTAAT 1 cut(s) 321
Asp700I GAANNNNTTC 2 cut(s) 129, 833
AspS9I GGNCC 8 cut(s) 117, 315, 377, 526, 527, 842, 1115, 1322
AsuHPI GGTGA 3 cut(s) 56, 292, 1397
AvaII GGWCC 4 cut(s) 117, 377, 842, 1322
AxyI CCTNAGG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 530
BalI TGGCCA 1 cut(s) 1429
BamHI GGATCC 1 cut(s) 1159
BanII GRGCYC 2 cut(s) 430, 530
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 1081, 1477
BccI CCATC 6 cut(s) 111, 344, 494, 590, 1220, 1446
BceAI ACGGC 2 cut(s) 1488, 1547
BciT130I CCWGG 6 cut(s) 341, 363, 396, 771, 1259, 1383
BciVI GTATCC 1 cut(s) 1261
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 1261
BglII AGATCT 1 cut(s) 943
BisI GCNGC 2 cut(s) 1070, 1491
BlsI GCNGC 2 cut(s) 1071, 1492
BmcAI AGTACT 1 cut(s) 690
Bme1390I CCNGG 6 cut(s) 341, 363, 396, 771, 1259, 1383
Bme18I GGWCC 4 cut(s) 117, 377, 842, 1322
BmgT120I GGNCC 8 cut(s) 117, 315, 377, 526, 527, 842, 1115, 1322
BmiI GGNNCC 7 cut(s) 118, 119, 378, 379, 528, 1161, 1256
BmrFI CCNGG 6 cut(s) 341, 363, 396, 771, 1259, 1383
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 4 cut(s) 136, 463, 1195, 1549
BmuI ACTGGG 1 cut(s) 755
Bsa29I ATCGAT 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 85
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 362, 640
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 113, 1264
Bse118I RCCGGY 1 cut(s) 1027
Bse1I ACTGG 3 cut(s) 761, 862, 1010
Bse21I CCTNAGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 615
BseBI CCWGG 6 cut(s) 341, 363, 396, 771, 1259, 1383
BseCI ATCGAT 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 362, 640
BseGI GGATG 4 cut(s) 103, 766, 783, 1457
BseLI CCNNNNNNNGG 3 cut(s) 94, 113, 1264
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 3 cut(s) 50, 1182, 1376
BseNI ACTGG 3 cut(s) 761, 862, 1010
BseRI GAGGAG 2 cut(s) 76, 191
BseSI GKGCMC 1 cut(s) 530
BseXI GCAGC 2 cut(s) 1081, 1477
BsgI GTGCAG 2 cut(s) 534, 1453
BshFI GGCC 7 cut(s) 317, 361, 528, 1027, 1116, 1429, 1456
BshVI ATCGAT 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 1028
BslFI GGGAC 6 cut(s) 96, 130, 179, 253, 363, 875
BslI CCNNNNNNNGG 3 cut(s) 94, 113, 1264
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 6 cut(s) 96, 130, 179, 253, 363, 875
BsmI GAATGC 1 cut(s) 1175
BsnI GGCC 7 cut(s) 317, 361, 528, 1027, 1116, 1429, 1456
Bso31I GGTCTC 1 cut(s) 173
Bsp120I GGGCCC 1 cut(s) 526
Bsp1286I GDGCHC 2 cut(s) 430, 530
Bsp143I GATC 7 cut(s) 46, 196, 943, 1159, 1215, 1387, 1444
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 3 cut(s) 728, 1154, 1475
BspANI GGCC 7 cut(s) 317, 361, 528, 1027, 1116, 1429, 1456
BspCNI CTCAG 3 cut(s) 51, 1181, 1375
BspDI ATCGAT 1 cut(s) 172
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 7 cut(s) 118, 119, 378, 379, 528, 1161, 1256
BspPI GGATC 3 cut(s) 1154, 1167, 1223
BspQI GCTCTTC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 1027
BsrI ACTGG 3 cut(s) 761, 862, 1010
BssAI RCCGGY 1 cut(s) 1027
BssECI CCNNGG 2 cut(s) 362, 640
BssMI GATC 7 cut(s) 46, 196, 943, 1159, 1215, 1387, 1444
BssNI GRCGYC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 6 cut(s) 341, 363, 396, 771, 1259, 1383
Bst4CI ACNGT 4 cut(s) 31, 889, 1063, 1525
Bst6I CTCTTC 5 cut(s) 120, 270, 282, 824, 996
BstACI GRCGYC 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 1029, 1287
BstDEI CTNAG 4 cut(s) 59, 1168, 1362, 1369
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 4 cut(s) 103, 766, 783, 1457
BstKTI GATC 7 cut(s) 49, 199, 946, 1162, 1218, 1390, 1447
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 7 cut(s) 46, 196, 943, 1159, 1215, 1387, 1444
BstMWI GCNNNNNNNGC 2 cut(s) 434, 1286
BstNI CCWGG 6 cut(s) 341, 363, 396, 771, 1259, 1383
BstSCI CCNGG 6 cut(s) 339, 361, 394, 769, 1257, 1381
BstSLI GKGCMC 1 cut(s) 530
BstV1I GCAGC 2 cut(s) 1081, 1477
BstX2I RGATCY 2 cut(s) 943, 1159
BstXI CCANNNNNNTGG 1 cut(s) 738
BstYI RGATCY 2 cut(s) 943, 1159
Bsu15I ATCGAT 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 59
BsuI GTATCC 1 cut(s) 1261
BsuRI GGCC 7 cut(s) 317, 361, 528, 1027, 1116, 1429, 1456
BsuTUI ATCGAT 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 4 cut(s) 103, 766, 783, 1457
BtsIMutI CAGTG 1 cut(s) 1059
Cac8I GCNNGC 2 cut(s) 1029, 1287
CciI TCATGA 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 1027
Cfr13I GGNCC 8 cut(s) 117, 315, 377, 526, 527, 842, 1115, 1322
ClaI ATCGAT 1 cut(s) 172
CseI GACGC 1 cut(s) 93
Csp6I GTAC 5 cut(s) 100, 534, 546, 689, 1001
CviQI GTAC 5 cut(s) 100, 534, 546, 689, 1001
DdeI CTNAG 4 cut(s) 59, 1168, 1362, 1369
DpnI GATC 7 cut(s) 48, 198, 945, 1161, 1217, 1389, 1446
DpnII GATC 7 cut(s) 46, 196, 943, 1159, 1215, 1387, 1444
EaeI YGGCCR 2 cut(s) 1025, 1427
Eam1104I CTCTTC 5 cut(s) 120, 270, 282, 824, 996
EarI CTCTTC 5 cut(s) 120, 270, 282, 824, 996
EciI GGCGGA 2 cut(s) 1169, 1490
Ecl136II GAGCTC 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 640
Eco24I GRGCYC 2 cut(s) 430, 530
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 476
Eco47I GGWCC 4 cut(s) 117, 377, 842, 1322
Eco53kI GAGCTC 1 cut(s) 428
Eco57I CTGAAG 4 cut(s) 116, 144, 1242, 1505
Eco81I CCTNAGG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 428
EcoO109I RGGNCCY 3 cut(s) 117, 377, 526
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 6 cut(s) 339, 361, 394, 769, 1257, 1381
EcoRV GATATC 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 640
EcoT38I GRGCYC 2 cut(s) 430, 530
ErhI CCWWGG 1 cut(s) 640
FalI AAGNNNNNCTT 2 cut(s) 1478, 1510
FaqI GGGAC 6 cut(s) 96, 130, 179, 253, 363, 875
FauNDI CATATG 1 cut(s) 700
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 1070, 1491
FokI GGATG 4 cut(s) 90, 753, 790, 1464
FriOI GRGCYC 2 cut(s) 430, 530
Fsp4HI GCNGC 2 cut(s) 1070, 1491
GluI GCNGC 2 cut(s) 1070, 1491
HaeIII GGCC 7 cut(s) 317, 361, 528, 1027, 1116, 1429, 1456
HapII CCGG 1 cut(s) 1028
HgaI GACGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 85
HinfI GANTC 4 cut(s) 174, 834, 1358, 1532
HpaII CCGG 1 cut(s) 1028
HphI GGTGA 3 cut(s) 56, 292, 1397
Hpy166II GTNNAC 2 cut(s) 70, 515
Hpy188I TCNGA 4 cut(s) 196, 492, 1171, 1465
Hpy188III TCNNGA 6 cut(s) 107, 178, 205, 711, 971, 1581
Hpy8I GTNNAC 2 cut(s) 70, 515
HpyAV CCTTC 6 cut(s) 32, 578, 768, 1042, 1472, 1480
HpyCH4III ACNGT 4 cut(s) 31, 889, 1063, 1525
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 1286
HpyF3I CTNAG 4 cut(s) 59, 1168, 1362, 1369
Hsp92I GRCGYC 1 cut(s) 85
KflI GGGWCCC 2 cut(s) 117, 377
KroI GCCGGC 1 cut(s) 1027
KroNI GCCGGC 1 cut(s) 1029
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 7 cut(s) 46, 196, 943, 1159, 1215, 1387, 1444
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 3 cut(s) 425, 877, 1254
Lsp1109I GCAGC 2 cut(s) 1081, 1477
LweI GCATC 4 cut(s) 136, 463, 1195, 1549
MaeIII GTNAC 2 cut(s) 280, 1570
MalI GATC 7 cut(s) 48, 198, 945, 1161, 1217, 1389, 1446
MboI GATC 7 cut(s) 46, 196, 943, 1159, 1215, 1387, 1444
MflI RGATCY 2 cut(s) 943, 1159
MhlI GDGCHC 2 cut(s) 430, 530
MlsI TGGCCA 1 cut(s) 1429
MluCI AATT 7 cut(s) 15, 210, 322, 417, 556, 846, 1550
MluNI TGGCCA 1 cut(s) 1429
MmeI TCCRAC 2 cut(s) 820, 1538
MnlI CCTC 9 cut(s) 54, 212, 271, 283, 517, 564, 1035, 1150, 1165
Mox20I TGGCCA 1 cut(s) 1429
MroNI GCCGGC 1 cut(s) 1027
MroXI GAANNNNTTC 2 cut(s) 129, 833
MscI TGGCCA 1 cut(s) 1429
MseI TTAA 5 cut(s) 321, 1122, 1133, 1331, 1566
MslI CAYNNNNRTG 5 cut(s) 625, 645, 703, 1064, 1235
Msp20I TGGCCA 1 cut(s) 1429
MspI CCGG 1 cut(s) 1028
MspR9I CCNGG 6 cut(s) 341, 363, 396, 771, 1259, 1383
Mva1269I GAATGC 1 cut(s) 1175
MvaI CCWGG 6 cut(s) 341, 363, 396, 771, 1259, 1383
MwoI GCNNNNNNNGC 2 cut(s) 434, 1286
NaeI GCCGGC 1 cut(s) 1029
NcoI CCATGG 1 cut(s) 640
NdeI CATATG 1 cut(s) 700
NdeII GATC 7 cut(s) 46, 196, 943, 1159, 1215, 1387, 1444
NgoMIV GCCGGC 1 cut(s) 1027
NlaIV GGNNCC 7 cut(s) 118, 119, 378, 379, 528, 1161, 1256
NmuCI GTSAC 1 cut(s) 280
PagI TCATGA 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 1175
PdiI GCCGGC 1 cut(s) 1029
PdmI GAANNNNTTC 2 cut(s) 129, 833
PfeI GAWTC 4 cut(s) 174, 834, 1358, 1532
PflMI CCANNNNNTGG 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 769
PkrI GCNGC 2 cut(s) 1071, 1492
PpuMI RGGWCCY 2 cut(s) 117, 377
PshBI ATTAAT 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 430
Psp5II RGGWCCY 2 cut(s) 117, 377
Psp6I CCWGG 6 cut(s) 339, 361, 394, 769, 1257, 1381
PspGI CCWGG 6 cut(s) 339, 361, 394, 769, 1257, 1381
PspN4I GGNNCC 7 cut(s) 118, 119, 378, 379, 528, 1161, 1256
PspOMI GGGCCC 1 cut(s) 526
PspPI GGNCC 8 cut(s) 117, 315, 377, 526, 527, 842, 1115, 1322
PspPPI RGGWCCY 2 cut(s) 117, 377
PsuI RGATCY 2 cut(s) 943, 1159
RsaI GTAC 5 cut(s) 101, 535, 547, 690, 1002
RsaNI GTAC 5 cut(s) 100, 534, 546, 689, 1001
RseI CAYNNNNRTG 5 cut(s) 625, 645, 703, 1064, 1235
SacI GAGCTC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 5 cut(s) 321, 1122, 1133, 1331, 1566
SatI GCNGC 2 cut(s) 1070, 1491
Sau3AI GATC 7 cut(s) 46, 196, 943, 1159, 1215, 1387, 1444
Sau96I GGNCC 8 cut(s) 117, 315, 377, 526, 527, 842, 1115, 1322
ScaI AGTACT 1 cut(s) 690
ScrFI CCNGG 6 cut(s) 341, 363, 396, 771, 1259, 1383
SduI GDGCHC 2 cut(s) 430, 530
SfaNI GCATC 4 cut(s) 136, 463, 1195, 1549
SinI GGWCC 4 cut(s) 117, 377, 842, 1322
SmiMI CAYNNNNRTG 5 cut(s) 625, 645, 703, 1064, 1235
Sse9I AATT 7 cut(s) 15, 210, 322, 417, 556, 846, 1550
SsiI CCGC 3 cut(s) 728, 1154, 1475
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 6 cut(s) 339, 361, 394, 769, 1257, 1381
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 4 cut(s) 31, 889, 1063, 1525
TaqI TCGA 6 cut(s) 141, 151, 172, 177, 793, 1405
TasI AATT 7 cut(s) 15, 210, 322, 417, 556, 846, 1550
TatI WGTACW 2 cut(s) 688, 1000
TfiI GAWTC 4 cut(s) 174, 834, 1358, 1532
Tru1I TTAA 5 cut(s) 321, 1122, 1133, 1331, 1566
Tru9I TTAA 5 cut(s) 321, 1122, 1133, 1331, 1566
TscAI CASTG 1 cut(s) 1066
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 1069, 1490
Tsp45I GTSAC 1 cut(s) 280
TspRI CASTG 1 cut(s) 1066
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 4 cut(s) 117, 377, 842, 1322
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 3 cut(s) 110, 347, 777
XmiI GTMKAC 1 cut(s) 514
XmnI GAANNNNTTC 2 cut(s) 129, 833
ZrmI AGTACT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.