Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Reverse (-)

12962195 .. 12972721

Gene Structure 10527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTGGAAGCTGAAGATTGCGGAGGGAGGGAATCCATGGCTGCGGACGCTCAACAACCACGTCGGCCGGCATGTCTGGGAGTTCGATCCCAAGCTCGGAACTCCGGCGGAGCTTGAGGAGGTCGAGAAGGCTCGCGAGCACTACCATAACCACCGCTTCGTGCACAAGCACAGCTCCGATCGGCTCATGCGCATTCAGGAGTACACAAATCTCAAGGGGGATAGGTCTCATGTGGTAAACACTGGATGGGCTATGTTAACTCTTATTGATGCCGGGCAGATTACAGAGCGGTTCGATAAATTGGGAGGAACCGGCTCAGTCCTCAGTTTTAGGATTTTTGGCACCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009555 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010685 GO:0010686 GO:0016043 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0016871 GO:0019742 GO:0019745 GO:0031559 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110

Pfam Domains

Protein Families

Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

116

Amino Acids

13.44

Weight (kDa)

8.14

Isoelectric Point (pI)

23.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	341
AccBSI	CCGCTC	1 cut(s)	289
AccII	CGCG	1 cut(s)	135
AciI	CCGC	5 cut(s)	20, 43, 107, 154, 289
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	4 cut(s)	10, 94, 112, 174
AluI	AGCT	4 cut(s)	10, 94, 112, 174
Alw21I	GWGCWC	2 cut(s)	141, 165
Alw26I	GTCTC	1 cut(s)	231
Alw44I	GTGCAC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	341
Bbv12I	GWGCWC	2 cut(s)	141, 165
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	310, 343
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	259
BpuEI	CTTGAG	2 cut(s)	134, 197
BpuMI	CCSGG	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	2 cut(s)	66, 311
Bse1I	ACTGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	330, 337
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	165
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	2 cut(s)	67, 181
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	2 cut(s)	67, 181
BsiHKAI	GWGCWC	2 cut(s)	141, 165
BsiSI	CCGG	4 cut(s)	67, 104, 273, 312
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	141, 165
Bsp143I	GATC	2 cut(s)	85, 178
Bsp19I	CCATGG	1 cut(s)	35
Bsp68I	TCGCGA	1 cut(s)	135
BspACI	CCGC	5 cut(s)	20, 43, 107, 154, 289
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	329, 336
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	310, 343
BspPI	GGATC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	289
BsrFI	RCCGGY	2 cut(s)	66, 311
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	2 cut(s)	66, 311
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	85, 178
BssT1I	CCWWGG	1 cut(s)	35
BstC8I	GCNNGC	3 cut(s)	68, 133, 137
BstDEI	CTNAG	2 cut(s)	316, 323
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	88, 181
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	2 cut(s)	85, 178
BstMCI	CGRYCG	2 cut(s)	67, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	165
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	27
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	35
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	240
BtuMI	TCGCGA	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	68, 133, 137
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	2 cut(s)	66, 311
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	36, 71, 187, 230
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	316, 323
DpnI	GATC	2 cut(s)	87, 180
DpnII	GATC	2 cut(s)	85, 178
EaeI	YGGCCR	1 cut(s)	64
EagI	CGGCCG	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	122
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	231
Eco52I	CGGCCG	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	4 cut(s)	39, 74, 190, 233
FaiI	YATR	6 cut(s)	37, 72, 147, 188, 231, 254
FatI	CATG	4 cut(s)	35, 70, 186, 229
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	41
FspAI	RTGCGCAY	1 cut(s)	191
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	4 cut(s)	67, 104, 273, 312
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	39, 74, 190, 233
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	31
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	4 cut(s)	67, 104, 273, 312
Hpy166II	GTNNAC	4 cut(s)	163, 204, 238, 258
Hpy188I	TCNGA	2 cut(s)	98, 178
Hpy188III	TCNNGA	3 cut(s)	124, 134, 197
Hpy8I	GTNNAC	4 cut(s)	163, 204, 238, 258
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	2 cut(s)	316, 323
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	39, 74, 190, 233
HspAI	GCGC	1 cut(s)	190
KroI	GCCGGC	1 cut(s)	66
KroNI	GCCGGC	1 cut(s)	68
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	85, 178
LmnI	GCTCC	2 cut(s)	109, 179
LpnPI	CCDG	7 cut(s)	61, 80, 117, 182, 228, 286, 325
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	60
MalI	GATC	2 cut(s)	87, 180
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	2 cut(s)	85, 178
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	141, 165
MluCI	AATT	1 cut(s)	299
MnlI	CCTC	6 cut(s)	16, 20, 109, 112, 299, 332
MroNI	GCCGGC	1 cut(s)	66
MseI	TTAA	1 cut(s)	257
MspI	CCGG	4 cut(s)	67, 104, 273, 312
MspR9I	CCNGG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	192
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	46
NaeI	GCCGGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	274
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	85, 178
NgoMIV	GCCGGC	1 cut(s)	66
NlaIII	CATG	4 cut(s)	39, 74, 190, 233
NlaIV	GGNNCC	2 cut(s)	310, 343
NruI	TCGCGA	1 cut(s)	135
NsbI	TGCGCA	1 cut(s)	191
NspI	RCATGY	1 cut(s)	74
PctI	GAATGC	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	42
Ple19I	CGATCG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	310, 343
PvuI	CGATCG	1 cut(s)	181
RruI	TCGCGA	1 cut(s)	135
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	85, 178
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	141, 165
SetI	ASST	7 cut(s)	12, 63, 96, 114, 123, 176, 227
SfaNI	GCATC	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	113, 212
SmoI	CTYRAG	2 cut(s)	113, 212
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	5 cut(s)	20, 43, 107, 154, 289
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	35
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	84, 123, 294
TasI	AATT	1 cut(s)	299
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	40
TspRI	CASTG	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.