Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Forward (+)

10622894 .. 10629431

Gene Structure 6538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG071700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTGGAGGCTGAAGGTTTCAGAAGGAGGAAGAGATGGTAACCCATGGCTCACAAGTGTGAATAATCACATCGGGAGACAATTCTGGGAGTTCGACCCCAATCTCGGAACACCGGAAGAGCGAGCTCAGGTGGAAAAAACACGTCTTGAGTTTCGTAACAATCGTTTTCAATCCAAACATAGTTCTGATCTATTAATGAGACTTCAGTTTGCAAAGGAGAAAGAAAGTGATCAAATGGAGCTACCAGCTCAGGTGAAAATAAAAAGTGAAGAAGAAATTAATGAAGAAGTAGTAGCAACCACATTGAGGAGGGGGTTGAGATTTTACTCGACTCTTCAGGCTAAGGATGGTTTCTGGCCTGGTGACTATGGCGGTCCTTTGTTTCTTCTACCTGGCTTGGTTATTGGATTATCTGTAACAGGGGCCCTTGATGCAATCTTGCCACACGAGCATTCAAAGGAGATCCGCCGCTATCTTTATAACCATCAGGAGGATTTGTATTACCCACATCCCATTTTACAGGACGTGCTGTGGGGGTGTCTTCATAAGGTTGGGGAACCTCTTCTAATGAGATGGCCATTGTCTAAGCTCAGGCAAAAAGCTCTCACCACCGTAATGGACCACATACACTATGAGGATGAAAACACTCAGTATATCTGCATTGGACCTGTCAATAAGGGATATAATGGATCCCAATGCTGGGATGTTGCTTTGGCTGTTCAAGCAATCCTTTCTACCAACCTTGTGACTGAATATGGTTCCGTGCTTAAGAAGGCGCACTATTTCATCAAAAATACACAAGTACTGTACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

271

Amino Acids

31.3

Weight (kDa)

6.56

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AciI	CCGC	3 cut(s)	372, 466, 469
AclWI	GGATC	3 cut(s)	457, 684, 697
AcoI	YGGCCR	1 cut(s)	575
AcuI	CTGAAG	3 cut(s)	32, 188, 320
AfaI	GTAC	2 cut(s)	804, 809
AfiI	CCNNNNNNNGG	5 cut(s)	104, 306, 490, 699, 700
AflII	CTTAAG	1 cut(s)	767
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	170, 456, 722
AjiI	CACGTC	2 cut(s)	143, 526
AjnI	CCWGG	2 cut(s)	358, 391
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	5 cut(s)	125, 241, 248, 589, 602
AluI	AGCT	5 cut(s)	125, 241, 248, 589, 602
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	70, 193
AlwI	GGATC	3 cut(s)	457, 684, 697
AoxI	GGCC	3 cut(s)	356, 423, 575
ApaI	GGGCCC	1 cut(s)	427
AseI	ATTAAT	2 cut(s)	194, 279
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	5 cut(s)	374, 423, 424, 619, 665
AsuHPI	GGTGA	3 cut(s)	265, 374, 598
AvaII	GGWCC	3 cut(s)	374, 619, 665
BaeGI	GKGCMC	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	577
BamHI	GGATCC	1 cut(s)	689
BanII	GRGCYC	2 cut(s)	127, 427
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	4 cut(s)	29, 341, 492, 567
BciT130I	CCWGG	2 cut(s)	360, 393
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	70, 193
BfrI	CTTAAG	1 cut(s)	767
BisI	GCNGC	1 cut(s)	469
BlsI	GCNGC	1 cut(s)	470
BmcAI	AGTACT	1 cut(s)	804
Bme1390I	CCNGG	2 cut(s)	360, 393
Bme18I	GGWCC	3 cut(s)	374, 619, 665
BmgBI	CACGTC	2 cut(s)	143, 526
BmgT120I	GGNCC	5 cut(s)	374, 423, 424, 619, 665
BmiI	GGNNCC	5 cut(s)	424, 425, 558, 691, 760
BmrFI	CCNGG	2 cut(s)	360, 393
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	533
Bpu10I	CCTNAGC	4 cut(s)	126, 249, 342, 590
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	5 cut(s)	104, 306, 490, 699, 700
BseBI	CCWGG	2 cut(s)	360, 393
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	4 cut(s)	352, 508, 643, 709
BseLI	CCNNNNNNNGG	5 cut(s)	104, 306, 490, 699, 700
BseMII	CTCAG	4 cut(s)	140, 263, 604, 662
BseRI	GAGGAG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	699
BshFI	GGCC	3 cut(s)	358, 425, 577
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	5 cut(s)	104, 306, 490, 699, 700
BsmAI	GTCTC	2 cut(s)	70, 193
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	3 cut(s)	358, 425, 577
Bsp120I	GGGCCC	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	127, 427
Bsp143I	GATC	4 cut(s)	187, 229, 462, 689
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	3 cut(s)	372, 466, 469
BspANI	GGCC	3 cut(s)	358, 425, 577
BspCNI	CTCAG	4 cut(s)	139, 262, 603, 661
BspLI	GGNNCC	5 cut(s)	424, 425, 558, 691, 760
BspPI	GGATC	3 cut(s)	457, 684, 697
BspQI	GCTCTTC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	767
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	4 cut(s)	187, 229, 462, 689
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	2 cut(s)	360, 393
Bst4CI	ACNGT	2 cut(s)	613, 807
Bst6I	CTCTTC	4 cut(s)	25, 111, 339, 567
BstAFI	CTTAAG	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	6 cut(s)	126, 249, 342, 585, 590, 648
BstDSI	CCRYGG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	38
BstF5I	GGATG	4 cut(s)	352, 508, 643, 709
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	4 cut(s)	190, 232, 465, 692
BstMAI	GTCTC	2 cut(s)	70, 193
BstMBI	GATC	4 cut(s)	187, 229, 462, 689
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 448, 722
BstNI	CCWGG	2 cut(s)	360, 393
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	358, 391
BstSLI	GKGCMC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	2 cut(s)	462, 689
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	2 cut(s)	462, 689
BsuRI	GGCC	3 cut(s)	358, 425, 577
BtgI	CCRYGG	1 cut(s)	44
BtrI	CACGTC	2 cut(s)	143, 526
BtsCI	GGATG	4 cut(s)	352, 508, 643, 709
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	778
Cfr13I	GGNCC	5 cut(s)	374, 423, 424, 619, 665
Csp6I	GTAC	2 cut(s)	803, 808
CviAII	CATG	1 cut(s)	45
CviQI	GTAC	2 cut(s)	803, 808
DdeI	CTNAG	6 cut(s)	126, 249, 342, 585, 590, 648
DpnI	GATC	4 cut(s)	189, 231, 464, 691
DpnII	GATC	4 cut(s)	187, 229, 462, 689
EaeI	YGGCCR	1 cut(s)	575
Eam1104I	CTCTTC	4 cut(s)	25, 111, 339, 567
EarI	CTCTTC	4 cut(s)	25, 111, 339, 567
EciI	GGCGGA	1 cut(s)	455
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	2 cut(s)	127, 427
Eco47I	GGWCC	3 cut(s)	374, 619, 665
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	3 cut(s)	32, 188, 320
Eco91I	GGTNACC	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	423, 424
EcoO65I	GGTNACC	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	358, 391
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	2 cut(s)	127, 427
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	48
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FatI	CATG	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	469
FokI	GGATG	4 cut(s)	359, 495, 650, 716
FriOI	GRGCYC	2 cut(s)	127, 427
Fsp4HI	GCNGC	1 cut(s)	469
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	1 cut(s)	469
GsaI	CCCAGC	1 cut(s)	703
HaeIII	GGCC	3 cut(s)	358, 425, 577
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	3 cut(s)	265, 374, 598
Hpy188I	TCNGA	3 cut(s)	22, 107, 187
Hpy188III	TCNNGA	3 cut(s)	73, 146, 488
HpyAV	CCTTC	3 cut(s)	7, 17, 766
HpyCH4III	ACNGT	2 cut(s)	613, 807
HpyCH4IV	ACGT	2 cut(s)	142, 525
HpyCH4V	TGCA	3 cut(s)	212, 434, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 448, 722
HpyF3I	CTNAG	6 cut(s)	126, 249, 342, 585, 590, 648
HpySE526I	ACGT	2 cut(s)	142, 525
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	187, 229, 462, 689
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	238
LweI	GCATC	1 cut(s)	421
MaeII	ACGT	2 cut(s)	142, 525
MaeIII	GTNAC	5 cut(s)	38, 155, 362, 415, 745
MalI	GATC	4 cut(s)	189, 231, 464, 691
MboI	GATC	4 cut(s)	187, 229, 462, 689
MboII	GAAGA	9 cut(s)	42, 128, 281, 284, 296, 326, 377, 533, 554
MflI	RGATCY	2 cut(s)	462, 689
MhlI	GDGCHC	2 cut(s)	127, 427
MlsI	TGGCCA	1 cut(s)	577
MluCI	AATT	2 cut(s)	80, 276
MluNI	TGGCCA	1 cut(s)	577
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	6 cut(s)	20, 300, 303, 484, 570, 628
Mox20I	TGGCCA	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	577
MseI	TTAA	3 cut(s)	194, 279, 768
MslI	CAYNNNNRTG	2 cut(s)	56, 614
Msp20I	TGGCCA	1 cut(s)	577
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	360, 393
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	2 cut(s)	360, 393
MwoI	GCNNNNNNNGC	3 cut(s)	431, 448, 722
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	4 cut(s)	187, 229, 462, 689
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	5 cut(s)	424, 425, 558, 691, 760
NmuCI	GTSAC	2 cut(s)	362, 745
OliI	CACNNNNGTG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	561
PkrI	GCNGC	1 cut(s)	470
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PshBI	ATTAAT	2 cut(s)	194, 279
PsiI	TTATAA	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	358, 391
PspEI	GGTNACC	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	699
PspGI	CCWGG	2 cut(s)	358, 391
PspN4I	GGNNCC	5 cut(s)	424, 425, 558, 691, 760
PspOMI	GGGCCC	1 cut(s)	423
PspPI	GGNCC	5 cut(s)	374, 423, 424, 619, 665
PsuI	RGATCY	2 cut(s)	462, 689
RsaI	GTAC	2 cut(s)	804, 809
RsaNI	GTAC	2 cut(s)	803, 808
RseI	CAYNNNNRTG	2 cut(s)	56, 614
SacI	GAGCTC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	194, 279, 768
SatI	GCNGC	1 cut(s)	469
Sau3AI	GATC	4 cut(s)	187, 229, 462, 689
Sau96I	GGNCC	5 cut(s)	374, 423, 424, 619, 665
ScaI	AGTACT	1 cut(s)	804
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	360, 393
SduI	GDGCHC	2 cut(s)	127, 427
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	3 cut(s)	374, 619, 665
SmiMI	CAYNNNNRTG	2 cut(s)	56, 614
SmlI	CTYRAG	2 cut(s)	146, 767
SmoI	CTYRAG	2 cut(s)	146, 767
Sse9I	AATT	2 cut(s)	80, 276
SsiI	CCGC	3 cut(s)	372, 466, 469
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	358, 391
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	613, 807
TaiI	ACGT	2 cut(s)	145, 528
TaqI	TCGA	2 cut(s)	93, 329
TasI	AATT	2 cut(s)	80, 276
TatI	WGTACW	2 cut(s)	802, 807
TauI	GCSGC	1 cut(s)	471
Tru1I	TTAA	3 cut(s)	194, 279, 768
Tru9I	TTAA	3 cut(s)	194, 279, 768
TseFI	GTSAC	2 cut(s)	362, 745
Tsp45I	GTSAC	2 cut(s)	362, 745
TspDTI	ATGAA	4 cut(s)	297, 533, 654, 775
TspGWI	ACGGA	1 cut(s)	751
Vha464I	CTTAAG	1 cut(s)	767
VpaK11BI	GGWCC	3 cut(s)	374, 619, 665
VspI	ATTAAT	2 cut(s)	194, 279
XmnI	GAANNNNTTC	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.