Rmu_co8308753.1_g000001

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8308753.1
OG0001409
Physical Location & Seq
Reverse (-)
2 .. 402
401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8308753.1_g000001.1.cds

Sequence Viewer

Length: 284 bp
atgtggacgctgaaggtttcagacggaggaagagatggtaacccatggctcacaagtatgaataatcacatcgggagacaattttgggagtttgacccaaatctcggaacaccggaagagcgagctcacgtggaaaaaacacgtcttgagtttcgtaacaatcgttttcaatccaaacatagttctgatctattaatgagacttcagtttgcaaaggagaaagaaagtgatcgaatggagctaccagctcaggtgaaaataaaaagtgaagaagaaattaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

94

Amino Acids

11.15

Weight (kDa)

6.29

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 32, 188
AcvI CACGTG 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 1 cut(s) 170
AjiI CACGTC 1 cut(s) 143
AluBI AGCT 3 cut(s) 125, 241, 248
AluI AGCT 3 cut(s) 125, 241, 248
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 70, 193
AseI ATTAAT 2 cut(s) 194, 279
AsuHPI GGTGA 1 cut(s) 265
BanII GRGCYC 1 cut(s) 127
BbrPI CACGTG 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 127
BccI CCATC 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 70, 193
BmgBI CACGTC 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 70, 193
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 187, 229
Bsp19I CCATGG 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 2 cut(s) 187, 229
BssT1I CCWWGG 1 cut(s) 44
Bst6I CTCTTC 2 cut(s) 25, 111
BstBAI YACGTR 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 44
BstEII GGTNACC 1 cut(s) 38
BstKTI GATC 2 cut(s) 190, 232
BstMAI GTCTC 2 cut(s) 70, 193
BstMBI GATC 2 cut(s) 187, 229
BstPI GGTNACC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 123
CseI GACGC 1 cut(s) 16
CviAII CATG 1 cut(s) 45
CviJI RGCY 4 cut(s) 49, 125, 241, 248
CviKI_1 RGCY 4 cut(s) 49, 125, 241, 248
DdeI CTNAG 1 cut(s) 249
DpnI GATC 2 cut(s) 189, 231
DpnII GATC 2 cut(s) 187, 229
Eam1104I CTCTTC 2 cut(s) 25, 111
EarI CTCTTC 2 cut(s) 25, 111
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 2 cut(s) 32, 188
Eco72I CACGTG 1 cut(s) 130
Eco91I GGTNACC 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 48
FaiI YATR 3 cut(s) 46, 59, 180
FatI CATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 127
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 48
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 22, 107, 187
Hpy188III TCNNGA 2 cut(s) 73, 146
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 7
HpyCH4IV ACGT 2 cut(s) 129, 142
HpyCH4V TGCA 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 2 cut(s) 129, 142
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 187, 229
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 3 cut(s) 126, 236, 258
MaeII ACGT 2 cut(s) 129, 142
MaeIII GTNAC 2 cut(s) 38, 155
MalI GATC 2 cut(s) 189, 231
MboI GATC 2 cut(s) 187, 229
MboII GAAGA 4 cut(s) 42, 128, 281, 284
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 80, 276
MnlI CCTC 1 cut(s) 20
MseI TTAA 2 cut(s) 194, 279
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 44
NdeII GATC 2 cut(s) 187, 229
NlaIII CATG 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 130
PshBI ATTAAT 2 cut(s) 194, 279
Psp124BI GAGCTC 1 cut(s) 127
PspCI CACGTG 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 194, 279
Sau3AI GATC 2 cut(s) 187, 229
SduI GDGCHC 1 cut(s) 127
SetI ASST 7 cut(s) 18, 127, 132, 145, 243, 250, 255
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 80, 276
SstI GAGCTC 1 cut(s) 127
StyI CCWWGG 1 cut(s) 44
TaiI ACGT 2 cut(s) 132, 145
TaqI TCGA 1 cut(s) 232
TasI AATT 2 cut(s) 80, 276
Tru1I TTAA 2 cut(s) 194, 279
Tru9I TTAA 2 cut(s) 194, 279
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 39
VspI ATTAAT 2 cut(s) 194, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.