Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8015556.1

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 467

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8015556.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 251 bp

ctgaacgcaatcttatcagatgaacataggaaggagatctgtcgatacctttacaatcatcagaatgaagatggtgggtggggtttacacatagagggccccagtaccatgtttggtagtgtcttgacttatgttaccttaaggttgcttggcgaaggggctaaagatggaaaaggagcgatggagacagggcgtaaatggattttggaccatgggagtgccacagcaattacatcatggggcaaaatgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009555 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010685 GO:0010686 GO:0016043 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0016871 GO:0019742 GO:0019745 GO:0031559 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110

Pfam Domains

Protein Families

Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

83

Amino Acids

9.19

Weight (kDa)

6.45

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	106
AflII	CTTAAG	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	97
ApaI	GGGCCC	1 cut(s)	101
AspS9I	GGNCC	3 cut(s)	97, 98, 208
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	101
BccI	CCATC	3 cut(s)	65, 161, 175
BcoDI	GTCTC	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	139
BglII	AGATCT	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	97, 98, 208
BmiI	GGNNCC	2 cut(s)	99, 100
BmrI	ACTGGG	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	99
Bsp120I	GGGCCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	211
BspANI	GGCC	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	99, 100
BspTI	CTTAAG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	211
BstAFI	CTTAAG	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	97, 98, 208
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	3 cut(s)	109, 212, 237
CviJI	RGCY	2 cut(s)	99, 161
CviKI_1	RGCY	2 cut(s)	99, 161
CviQI	GTAC	1 cut(s)	105
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	208
EcoO109I	RGGNCCY	2 cut(s)	97, 98
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	3 cut(s)	112, 215, 240
FaiI	YATR	6 cut(s)	27, 92, 110, 132, 213, 238
FatI	CATG	3 cut(s)	108, 211, 236
FriOI	GRGCYC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	112, 215, 240
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	19, 63
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	25, 149
Hsp92II	CATG	3 cut(s)	112, 215, 240
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	2 cut(s)	115, 174
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	1 cut(s)	228
MnlI	CCTC	1 cut(s)	88
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	2 cut(s)	63, 216
MspCI	CTTAAG	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	3 cut(s)	112, 215, 240
NlaIV	GGNNCC	2 cut(s)	99, 100
PspN4I	GGNNCC	2 cut(s)	99, 100
PspOMI	GGGCCC	1 cut(s)	97
PspPI	GGNCC	3 cut(s)	97, 98, 208
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	2 cut(s)	63, 216
SaqAI	TTAA	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	3 cut(s)	97, 98, 208
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	3 cut(s)	51, 140, 146
SgeI	CNNG	6 cut(s)	114, 121, 136, 161, 201, 224
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	63, 216
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	211
TaqI	TCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	36, 81
Vha464I	CTTAAG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.