Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

19576415 .. 19577707

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGACAAGGAGGGGGAGGTGTTGCTGGGGAAGTACCAACTTGGGAAGCTCTTAGGGCAGGGGGGCTTTGCAAAGGTCTACCACGCAAGGAGCCTCAAAACCAACCAGATTGTAGCCATTAAGATCATCAGCAAAGAGAAGGTTTTTGAATTGGGACTCGTTGATCAGACCAAAAGAGAGATTTCTATTATGAGACTGCTTAAACACCCCAACATAGTGCAGCTATATGAAGTCATGGCCACCAAAAAGAAGATCTACCTTGTCATGGAATACGCAGAAGGCGGCGAGCTTTTTCAAAAGATAAATAAAAGGAGGCTCAAGGAGGAAGCAGCAAGGAGATTCTTCCAACAACTCATCACTGCTGTCGACTTCTGCCACAAGAGAGGTGTTTTCCATCGCGATTTGAAGCCCGAGAACTTGCTGCTAGATAAAGATGGAGTGCTGAAGGTGTCGGATTTTGGGTTGAGTGCGTTTTCTGAATCGAAGAGGAAACATGCTTTACTGCATACAACTTGTGGCACTCCTAATTATGTAGCTCCTGAAGTTATCCGGCTTGGAGCCTATGATGGAGCTAAAGCTGATATATGGTCTTGTGGGGTGATCTTGTTTCAACTATTGGCTGGTTATCGTCCCTTCGATGACTCAAATCTAAACAACATGTTTAGGAAAATATGTGCATCAGAATATCGATGTCCCCGGTGGTTTTCCGATGACATAAGAAAGCTCTTGTTTGGAATCCTCAACACAAATCCGAATGAAAGGTTTCTTGCTTCAGACATAATGAGAAGTAGCTGGTTTCAAGAAGGACTCAGCTCCAAGATTAAAACAGAAGTGGAAGATGTTGATGGGGAGTCTGATGACTGTGACAAAAGCGAGAACCAAGAGACTATTACACCCGCCACTTTGAGTGCTTTCGATATCATATCTCTCTCTAGTGGATTCGATCTTTCTGGCTTGATGATGCAGAAGGATGCAAAGAGATCAGCTGTGCAGTTCACATCCGCGCAATCTGCGACATCCATCATGACAAAGCTGAGGGATATTACTCGGAAACTGAAGCTGAAATCGAAGAAAGAAGGAGCATCATTGAAGTTAATGAAGGGGGCATTATCCATAGAAGCCGAAATTTTTGAGTTCACTCCATCCTTTCATTTAGTGGAGATGAAGAAATCTAATGGGGATACATTTGAGTTTAGGAAGATGGTAGACGAGGATATAAGGCCGGCTCTCAAAGACGTCGTCTGGACATGGCAGGGTGAGCGCAGTAACAACAATAGCAGCATCTGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

431

Amino Acids

48.84

Weight (kDa)

8.99

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 266	3e-76	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 261	2.1e-41	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	77 - 170	1.1e-07	ABC1 atypical kinase-like domain
NAF	PF03822	299 - 358	4.1e-16	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1239
AccI	GTMKAC	3 cut(s)	78, 366, 1206
AccII	CGCG	2 cut(s)	399, 1004
AciI	CCGC	3 cut(s)	282, 897, 1002
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	1125
AcuI	CTGAAG	4 cut(s)	464, 561, 756, 1076
AcyI	GRCGYC	1 cut(s)	1236
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	6 cut(s)	149, 296, 406, 611, 800, 1090
Alw26I	GTCTC	2 cut(s)	187, 878
AlwNI	CAGNNNCTG	1 cut(s)	1284
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	2 cut(s)	237, 1220
ApeKI	GCWGC	4 cut(s)	220, 329, 421, 1278
ApoI	RAATTY	1 cut(s)	1125
ArsI	GACNNNNNNTTYG	2 cut(s)	1224, 1256
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	2 cut(s)	1006, 1263
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	2 cut(s)	610, 1268
AvaI	CYCGRG	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	239
BbvCI	CCTCAGC	1 cut(s)	1034
BbvI	GCAGC	3 cut(s)	232, 341, 408
BccI	CCATC	7 cut(s)	402, 428, 560, 839, 1028, 1150, 1195
BciVI	GTATCC	1 cut(s)	1174
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	2 cut(s)	187, 878
BfaI	CTAG	2 cut(s)	425, 933
BfuI	GTATCC	1 cut(s)	1174
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	5 cut(s)	221, 283, 330, 422, 1279
BlsI	GCNGC	5 cut(s)	222, 284, 331, 423, 1280
Bme1390I	CCNGG	1 cut(s)	697
BmeT110I	CYCGRG	1 cut(s)	410
BmiI	GGNNCC	2 cut(s)	92, 559
BmrFI	CCNGG	1 cut(s)	697
BmsI	GCATC	4 cut(s)	686, 951, 961, 1091
Bpu10I	CCTNAGC	1 cut(s)	1034
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	697
Bsa29I	ATCGAT	1 cut(s)	688
BsaHI	GRCGYC	1 cut(s)	1236
BsaJI	CCNNGG	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	1 cut(s)	1222
BseCI	ATCGAT	1 cut(s)	688
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	4 cut(s)	976, 998, 1016, 1142
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	823, 1025
BseXI	GCAGC	3 cut(s)	232, 341, 408
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	2 cut(s)	239, 1010
Bsh1236I	CGCG	2 cut(s)	399, 1004
BshFI	GGCC	2 cut(s)	239, 1222
BshVI	ATCGAT	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	3 cut(s)	550, 697, 1223
BslFI	GGGAC	3 cut(s)	168, 615, 678
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	187, 878
BsmFI	GGGAC	3 cut(s)	168, 615, 678
BsnI	GGCC	2 cut(s)	239, 1222
BsoBI	CYCGRG	1 cut(s)	410
Bsp143I	GATC	6 cut(s)	123, 163, 252, 600, 943, 980
Bsp68I	TCGCGA	1 cut(s)	399
BspACI	CCGC	3 cut(s)	282, 897, 1002
BspANI	GGCC	2 cut(s)	239, 1222
BspCNI	CTCAG	2 cut(s)	822, 1026
BspDI	ATCGAT	1 cut(s)	688
BspFNI	CGCG	2 cut(s)	399, 1004
BspHI	TCATGA	1 cut(s)	1023
BspLI	GGNNCC	2 cut(s)	92, 559
BsrFI	RCCGGY	1 cut(s)	1222
BssAI	RCCGGY	1 cut(s)	1222
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	6 cut(s)	123, 163, 252, 600, 943, 980
BssNI	GRCGYC	1 cut(s)	1236
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	1 cut(s)	479
BstACI	GRCGYC	1 cut(s)	1236
BstAPI	GCANNNNNTGC	1 cut(s)	1284
BstC8I	GCNNGC	2 cut(s)	287, 1224
BstDEI	CTNAG	3 cut(s)	52, 809, 1034
BstF5I	GGATG	4 cut(s)	976, 998, 1016, 1142
BstFNI	CGCG	2 cut(s)	399, 1004
BstHHI	GCGC	2 cut(s)	1006, 1263
BstKTI	GATC	6 cut(s)	126, 166, 255, 603, 946, 983
BstMAI	GTCTC	2 cut(s)	187, 878
BstMBI	GATC	6 cut(s)	123, 163, 252, 600, 943, 980
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 1010, 1258, 1284
BstNSI	RCATGY	2 cut(s)	497, 661
BstSCI	CCNGG	1 cut(s)	695
BstUI	CGCG	2 cut(s)	399, 1004
BstV1I	GCAGC	3 cut(s)	232, 341, 408
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	1174
BsuRI	GGCC	2 cut(s)	239, 1222
BsuTUI	ATCGAT	1 cut(s)	688
BtgZI	GCGATG	1 cut(s)	380
BtsCI	GGATG	4 cut(s)	976, 998, 1016, 1142
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
BtuMI	TCGCGA	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	287, 1224
CaiI	CAGNNNCTG	1 cut(s)	1284
CciI	TCATGA	1 cut(s)	1023
CfoI	GCGC	2 cut(s)	1006, 1263
Cfr10I	RCCGGY	1 cut(s)	1222
ClaI	ATCGAT	1 cut(s)	688
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	6 cut(s)	235, 265, 494, 658, 1024, 1248
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	52, 809, 1034
DpnI	GATC	6 cut(s)	125, 165, 254, 602, 945, 982
DpnII	GATC	6 cut(s)	123, 163, 252, 600, 943, 980
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	919
Eco57I	CTGAAG	4 cut(s)	464, 561, 756, 1076
Eco88I	CYCGRG	1 cut(s)	410
EcoRV	GATATC	1 cut(s)	919
FaeI	CATG	6 cut(s)	238, 268, 497, 661, 1027, 1251
FaqI	GGGAC	3 cut(s)	168, 615, 678
FatI	CATG	6 cut(s)	234, 264, 493, 657, 1023, 1247
FauI	CCCGC	1 cut(s)	904
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	3 cut(s)	78, 366, 1206
Fnu4HI	GCNGC	5 cut(s)	221, 283, 330, 422, 1279
FokI	GGATG	4 cut(s)	983, 985, 1003, 1129
Fsp4HI	GCNGC	5 cut(s)	221, 283, 330, 422, 1279
FspBI	CTAG	2 cut(s)	425, 933
GlaI	GCGC	2 cut(s)	1005, 1262
GluI	GCNGC	5 cut(s)	221, 283, 330, 422, 1279
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	239, 1222
HapII	CCGG	3 cut(s)	550, 697, 1223
HhaI	GCGC	2 cut(s)	1006, 1263
Hin1I	GRCGYC	1 cut(s)	1236
Hin1II	CATG	6 cut(s)	238, 268, 497, 661, 1027, 1251
Hin6I	GCGC	2 cut(s)	1004, 1261
HinP1I	GCGC	2 cut(s)	1004, 1261
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	8 cut(s)	156, 339, 479, 641, 735, 807, 851, 939
HpaII	CCGG	3 cut(s)	550, 697, 1223
HphI	GGTGA	2 cut(s)	610, 1268
Hpy166II	GTNNAC	5 cut(s)	79, 367, 996, 1137, 1207
Hpy188I	TCNGA	9 cut(s)	168, 454, 478, 682, 709, 753, 775, 856, 1050
Hpy188III	TCNNGA	5 cut(s)	398, 539, 800, 1024, 1243
Hpy8I	GTNNAC	5 cut(s)	79, 367, 996, 1137, 1207
Hpy99I	CGWCG	1 cut(s)	1241
HpyAV	CCTTC	8 cut(s)	133, 272, 439, 643, 797, 961, 1070, 1093
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4IV	ACGT	1 cut(s)	1236
HpyCH4V	TGCA	7 cut(s)	71, 220, 505, 677, 964, 974, 991
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 1010, 1258, 1284
HpyF3I	CTNAG	3 cut(s)	52, 809, 1034
HpySE526I	ACGT	1 cut(s)	1236
Hsp92I	GRCGYC	1 cut(s)	1236
Hsp92II	CATG	6 cut(s)	238, 268, 497, 661, 1027, 1251
HspAI	GCGC	2 cut(s)	1004, 1261
KroI	GCCGGC	1 cut(s)	1222
KroNI	GCCGGC	1 cut(s)	1224
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	6 cut(s)	123, 163, 252, 600, 943, 980
LmnI	GCTCC	6 cut(s)	90, 541, 557, 569, 818, 1079
Lsp1109I	GCAGC	3 cut(s)	232, 341, 408
LweI	GCATC	4 cut(s)	686, 951, 961, 1091
MaeI	CTAG	2 cut(s)	425, 933
MaeII	ACGT	1 cut(s)	1236
MaeIII	GTNAC	2 cut(s)	863, 1265
MalI	GATC	6 cut(s)	125, 165, 254, 602, 945, 982
MboI	GATC	6 cut(s)	123, 163, 252, 600, 943, 980
MboII	GAAGA	7 cut(s)	262, 334, 496, 848, 1081, 1177, 1210
MflI	RGATCY	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	3 cut(s)	149, 526, 1125
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	4 cut(s)	150, 635, 801, 860
MmeI	TCCRAC	2 cut(s)	370, 432
Mox20I	TGGCCA	1 cut(s)	239
MroNI	GCCGGC	1 cut(s)	1222
MroXI	GAANNNNTTC	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	4 cut(s)	120, 201, 822, 1094
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	986
MspI	CCGG	3 cut(s)	550, 697, 1223
MspR9I	CCNGG	1 cut(s)	697
MvnI	CGCG	2 cut(s)	399, 1004
MwoI	GCNNNNNNNGC	4 cut(s)	55, 1010, 1258, 1284
NaeI	GCCGGC	1 cut(s)	1224
NciI	CCSGG	1 cut(s)	697
NdeII	GATC	6 cut(s)	123, 163, 252, 600, 943, 980
NgoMIV	GCCGGC	1 cut(s)	1222
NlaIII	CATG	6 cut(s)	238, 268, 497, 661, 1027, 1251
NlaIV	GGNNCC	2 cut(s)	92, 559
NmuCI	GTSAC	1 cut(s)	863
NruI	TCGCGA	1 cut(s)	399
NspI	RCATGY	2 cut(s)	497, 661
PagI	TCATGA	1 cut(s)	1023
PciI	ACATGT	1 cut(s)	657
PdiI	GCCGGC	1 cut(s)	1224
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	4 cut(s)	339, 479, 735, 939
PflFI	GACNNNGTC	1 cut(s)	1238
PkrI	GCNGC	5 cut(s)	222, 284, 331, 423, 1280
PleI	GAGTC	4 cut(s)	150, 635, 801, 859
PpsI	GAGTC	4 cut(s)	150, 635, 801, 859
PscI	ACATGT	1 cut(s)	657
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	92, 559
PstNI	CAGNNNCTG	1 cut(s)	1284
PsuI	RGATCY	1 cut(s)	252
PsyI	GACNNNGTC	1 cut(s)	1238
PvuII	CAGCTG	1 cut(s)	986
RruI	TCGCGA	1 cut(s)	399
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	120, 201, 822, 1094
SatI	GCNGC	5 cut(s)	221, 283, 330, 422, 1279
Sau3AI	GATC	6 cut(s)	123, 163, 252, 600, 943, 980
SchI	GAGTC	4 cut(s)	150, 635, 801, 860
ScrFI	CCNGG	1 cut(s)	697
SfaNI	GCATC	4 cut(s)	686, 951, 961, 1091
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	149, 526, 1125
SsiI	CCGC	3 cut(s)	282, 897, 1002
SspMI	CTAG	2 cut(s)	425, 933
StyD4I	CCNGG	1 cut(s)	695
TaaI	ACNGT	1 cut(s)	863
TaiI	ACGT	1 cut(s)	1239
TaqI	TCGA	7 cut(s)	366, 482, 636, 688, 915, 942, 1067
TasI	AATT	3 cut(s)	149, 526, 1125
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	4 cut(s)	339, 479, 735, 939
Tru1I	TTAA	4 cut(s)	120, 201, 822, 1094
Tru9I	TTAA	4 cut(s)	120, 201, 822, 1094
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	4 cut(s)	220, 329, 421, 1278
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	5 cut(s)	243, 771, 1112, 1139, 1178
TspRI	CASTG	1 cut(s)	364
Tth111I	GACNNNGTC	1 cut(s)	1238
XapI	RAATTY	1 cut(s)	1125
XceI	RCATGY	2 cut(s)	497, 661
XmiI	GTMKAC	3 cut(s)	78, 366, 1206
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	2 cut(s)	425, 933
ZraI	GACGTC	1 cut(s)	1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.