Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

47408384 .. 47409325

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG339800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGAGGAAGGGAAAAGTGTTGATTCAGAAGTACGAAGTTGATAAATTTTTAGGTCAAGGAACCTTTGCAAAGGTTTATAGAGCAAGGAACCTAGAAACTAATAAGAGTGTGGCTATTAAAGTAATCGCCAGAGACAAGGTTGTAAAAGATGGATTGGTTAATCAAACCAAAAGAGAGATAACTATCATGAGAATGCTTAAACACCCAAACATAGTGCAGCTATATGATGTCATAGCCTCCAGAGACAAGATCTACCTTGTCATGGAATACGCGGAAGGCGGTGAGCTTTTTCACAAAATAGTAAAAGGAAAGCTGGAGGAGGAAGTAGCCAGGAACTACTTCCAACAGTTGATCACCACAGTTGACTTCTGCCACAGGAGAGGTGTTTACCACCACGATTTGAAGCCCGAAAACTTGCTGCTAGATGAAAATGGAGTGTTGAAGGTATCGGATTTTGGGTTAAGTGCGCTTGCTGAATCGCAGAGGGAAGATGGTTTACTACATACAAGTTGTGGCACACCTTCTTATGTAGCTCCTGAAGTGTTAGGCAGGAAAGCCTATGATGGAGCCAAAGCCGATATATGGTCTTATTATAAATGGCCGAGGTGGTTTCCAGATGAAGTGAGGAGCCTCCTGTCTGGGATCCTCAACCCTGATCCAGATAAAAGGATTCTTATTTCAGAGATAATGGAAACTTGCCGGTTTCGAAAAGGCTCCAAATCCGTTACGACCATACCAGAAGTGGAAGACCCGGGTTTGTTGGGCGCTGATGCAGGGTTTGATGATCGTGACAACAGTGAGAAACAACAGCTTGCTAGACCAACCCTCTTTGAACGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

281

Amino Acids

32.18

Weight (kDa)

8.26

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 198	1.3e-61	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	14 - 198	6.7e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccII	CGCG	1 cut(s)	275
AciI	CCGC	2 cut(s)	275, 282
AclWI	GGATC	3 cut(s)	640, 653, 653
AcoI	YGGCCR	1 cut(s)	602
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	265, 585
AgsI	TTSAA	3 cut(s)	406, 445, 836
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	5 cut(s)	223, 289, 316, 536, 814
AluI	AGCT	5 cut(s)	223, 289, 316, 536, 814
Alw26I	GTCTC	2 cut(s)	129, 240
AlwI	GGATC	3 cut(s)	640, 653, 653
Ama87I	CYCGRG	1 cut(s)	754
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	2 cut(s)	220, 421
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	472, 770
AsuC2I	CCSGG	2 cut(s)	755, 756
AsuHPI	GGTGA	2 cut(s)	296, 349
AsuII	TTCGAA	1 cut(s)	709
AvaI	CYCGRG	1 cut(s)	754
BamHI	GGATCC	1 cut(s)	645
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
BbsI	GAAGAC	1 cut(s)	756
BbvI	GCAGC	2 cut(s)	232, 408
BccI	CCATC	3 cut(s)	146, 488, 560
BciT130I	CCWGG	1 cut(s)	334
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	2 cut(s)	755, 756
BcoDI	GTCTC	2 cut(s)	129, 240
BfaI	CTAG	3 cut(s)	95, 425, 819
BfoI	RGCGCY	1 cut(s)	771
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	2 cut(s)	221, 422
BlsI	GCNGC	2 cut(s)	222, 423
Bme1390I	CCNGG	3 cut(s)	334, 755, 756
BmeT110I	CYCGRG	1 cut(s)	754
BmiI	GGNNCC	6 cut(s)	64, 92, 571, 632, 647, 718
BmrFI	CCNGG	3 cut(s)	334, 755, 756
BmsI	GCATC	1 cut(s)	763
BpiI	GAAGAC	1 cut(s)	756
BpmI	CTGGAG	2 cut(s)	226, 338
Bpu14I	TTCGAA	1 cut(s)	709
BpuMI	CCSGG	2 cut(s)	755, 756
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	605, 754
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 585
Bse118I	RCCGGY	1 cut(s)	702
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	605, 754
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	265, 585
BseRI	GAGGAG	2 cut(s)	335, 643
BseXI	GCAGC	2 cut(s)	232, 408
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	754
BsiSI	CCGG	2 cut(s)	703, 755
BslI	CCNNNNNNNGG	2 cut(s)	265, 585
BsmAI	GTCTC	2 cut(s)	129, 240
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	754
Bsp119I	TTCGAA	1 cut(s)	709
Bsp143I	GATC	5 cut(s)	252, 354, 645, 658, 787
BspACI	CCGC	2 cut(s)	275, 282
BspANI	GGCC	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	6 cut(s)	64, 92, 571, 632, 647, 718
BspPI	GGATC	3 cut(s)	640, 653, 653
BspT104I	TTCGAA	1 cut(s)	709
BsrFI	RCCGGY	1 cut(s)	702
BssAI	RCCGGY	1 cut(s)	702
BssECI	CCNNGG	2 cut(s)	605, 754
BssMI	GATC	5 cut(s)	252, 354, 645, 658, 787
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	3 cut(s)	351, 364, 800
BstBI	TTCGAA	1 cut(s)	709
BstC8I	GCNNGC	2 cut(s)	474, 816
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	771
BstHHI	GCGC	2 cut(s)	472, 770
BstKTI	GATC	5 cut(s)	255, 357, 648, 661, 790
BstMAI	GTCTC	2 cut(s)	129, 240
BstMBI	GATC	5 cut(s)	252, 354, 645, 658, 787
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	3 cut(s)	332, 753, 754
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	232, 408
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	2 cut(s)	252, 645
BstYI	RGATCY	2 cut(s)	252, 645
BsuRI	GGCC	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	805
Cac8I	GCNNGC	2 cut(s)	474, 816
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	2 cut(s)	472, 770
Cfr10I	RCCGGY	1 cut(s)	702
Cfr9I	CCCGGG	1 cut(s)	754
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	190, 265
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	5 cut(s)	254, 356, 647, 660, 789
DpnII	GATC	5 cut(s)	252, 354, 645, 658, 787
EaeI	YGGCCR	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	332
FaeI	CATG	2 cut(s)	193, 268
FatI	CATG	2 cut(s)	189, 264
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	221, 422
Fsp4HI	GCNGC	2 cut(s)	221, 422
FspBI	CTAG	3 cut(s)	95, 425, 819
GlaI	GCGC	2 cut(s)	471, 769
GluI	GCNGC	2 cut(s)	221, 422
GsuI	CTGGAG	2 cut(s)	226, 338
HaeII	RGCGCY	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	2 cut(s)	703, 755
HhaI	GCGC	2 cut(s)	472, 770
Hin1II	CATG	2 cut(s)	193, 268
Hin6I	GCGC	2 cut(s)	470, 768
HinP1I	GCGC	2 cut(s)	470, 768
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	3 cut(s)	25, 479, 673
HpaII	CCGG	2 cut(s)	703, 755
HphI	GGTGA	2 cut(s)	296, 349
Hpy166II	GTNNAC	3 cut(s)	367, 391, 500
Hpy188I	TCNGA	3 cut(s)	30, 454, 685
Hpy188III	TCNNGA	6 cut(s)	190, 243, 539, 617, 662, 791
Hpy8I	GTNNAC	3 cut(s)	367, 391, 500
HpyAV	CCTTC	4 cut(s)	4, 272, 439, 534
HpyCH4III	ACNGT	3 cut(s)	351, 364, 800
HpyCH4V	TGCA	3 cut(s)	71, 220, 776
Hsp92II	CATG	2 cut(s)	193, 268
HspAI	GCGC	2 cut(s)	470, 768
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	5 cut(s)	252, 354, 645, 658, 787
LmnI	GCTCC	4 cut(s)	541, 569, 630, 722
Lsp1109I	GCAGC	2 cut(s)	232, 408
LweI	GCATC	1 cut(s)	763
MaeI	CTAG	3 cut(s)	95, 425, 819
MaeIII	GTNAC	2 cut(s)	727, 791
MalI	GATC	5 cut(s)	254, 356, 647, 660, 789
MboI	GATC	5 cut(s)	252, 354, 645, 658, 787
MboII	GAAGA	2 cut(s)	503, 761
MflI	RGATCY	2 cut(s)	252, 645
MluCI	AATT	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	4 cut(s)	120, 162, 201, 464
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	2 cut(s)	703, 755
MspR9I	CCNGG	3 cut(s)	334, 755, 756
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	334
MvnI	CGCG	1 cut(s)	275
NciI	CCSGG	2 cut(s)	755, 756
NdeII	GATC	5 cut(s)	252, 354, 645, 658, 787
NlaIII	CATG	2 cut(s)	193, 268
NlaIV	GGNNCC	6 cut(s)	64, 92, 571, 632, 647, 718
NmeAIII	GCCGAG	1 cut(s)	630
NmuCI	GTSAC	1 cut(s)	791
NspV	TTCGAA	1 cut(s)	709
PagI	TCATGA	1 cut(s)	189
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	25, 479, 673
PkrI	GCNGC	2 cut(s)	222, 423
PsiI	TTATAA	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	6 cut(s)	64, 92, 571, 632, 647, 718
PsuI	RGATCY	2 cut(s)	252, 645
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	4 cut(s)	120, 162, 201, 464
SatI	GCNGC	2 cut(s)	221, 422
Sau3AI	GATC	5 cut(s)	252, 354, 645, 658, 787
ScrFI	CCNGG	3 cut(s)	334, 755, 756
SfaNI	GCATC	1 cut(s)	763
SfuI	TTCGAA	1 cut(s)	709
SmaI	CCCGGG	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	275, 282
SspMI	CTAG	3 cut(s)	95, 425, 819
StyD4I	CCNGG	3 cut(s)	332, 753, 754
TaaI	ACNGT	3 cut(s)	351, 364, 800
TaqI	TCGA	1 cut(s)	709
TasI	AATT	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	25, 479, 673
Tru1I	TTAA	4 cut(s)	120, 162, 201, 464
Tru9I	TTAA	4 cut(s)	120, 162, 201, 464
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	1 cut(s)	791
TseI	GCWGC	2 cut(s)	220, 421
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	2 cut(s)	444, 636
TspGWI	ACGGA	1 cut(s)	715
TspMI	CCCGGG	1 cut(s)	754
TspRI	CASTG	1 cut(s)	805
XapI	RAATTY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XmaI	CCCGGG	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	3 cut(s)	95, 425, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.