Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

55272700 .. 55279133

Gene Structure 6434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTCGACCGGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGGACCAAGATTTATATAATATTGGAGTTCATTACGGGTGGTGAATTGTTTGATAAAATCGTTCATCATGGACGTCTTAGCGAAAGTGAAGCCGGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAAAGCCGGAAAATCTTTTGCTTCATTCTCTTGGAAATTTAAGAATTTCAGATTTCGGTCCGAGTGCATTGCCGAACAAGGAGTCGGCCTCCTTTGCACAACTTATGGGACCCCTAACTATGTTGCACCCGAGGTCCTCGATCACAAGGGTTATGATGGTGCCGTGGCAGATGTTTGGTCTGTGGGATGCCGGTCAAGGAAACAAAAGTCACCAGGCCACCAACAAAGAGAATCCCTTTTTCTTCCACTATCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

169

Amino Acids

19.48

Weight (kDa)

9.07

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 112	3.5e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 108	9.1e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	2 cut(s)	286, 294
AcyI	GRCGYC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	2 cut(s)	40, 199
AluI	AGCT	2 cut(s)	40, 199
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	2 cut(s)	336, 465
ApoI	RAATTY	2 cut(s)	286, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AspS9I	GGNCC	4 cut(s)	90, 308, 359, 384
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	140, 452
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	4 cut(s)	90, 308, 359, 384
BanI	GGYRCC	1 cut(s)	409
BauI	CACGAG	1 cut(s)	71
BccI	CCATC	2 cut(s)	200, 400
BceAI	ACGGC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	181
BfaI	CTAG	1 cut(s)	80
Bme1390I	CCNGG	2 cut(s)	181, 464
Bme18I	GGWCC	4 cut(s)	90, 308, 359, 384
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	4 cut(s)	90, 308, 359, 384
BmiI	GGNNCC	3 cut(s)	360, 361, 411
BmrFI	CCNGG	2 cut(s)	181, 464
BmsI	GCATC	2 cut(s)	58, 427
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuMI	CCSGG	1 cut(s)	181
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	380, 413
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	440
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	380, 413
BseGI	GGATG	2 cut(s)	49, 442
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	338, 467
BshNI	GGYRCC	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	4 cut(s)	10, 180, 257, 441
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	338, 467
BsoBI	CYCGRG	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	12, 390
BspANI	GGCC	2 cut(s)	338, 467
BspLI	GGNNCC	3 cut(s)	360, 361, 411
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	380, 413
BssMI	GATC	2 cut(s)	12, 390
BssNI	GRCGYC	1 cut(s)	160
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	49, 442
BstKTI	GATC	2 cut(s)	15, 393
BstMBI	GATC	2 cut(s)	12, 390
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 344
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	179, 462
BsuRI	GGCC	2 cut(s)	338, 467
BtgI	CCRYGG	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	49, 442
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	4 cut(s)	90, 308, 359, 384
CpoI	CGGWCCG	1 cut(s)	308
CspI	CGGWCCG	1 cut(s)	308
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	6 cut(s)	40, 179, 199, 256, 338, 467
CviKI_1	RGCY	6 cut(s)	40, 179, 199, 256, 338, 467
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	2 cut(s)	14, 392
DpnII	GATC	2 cut(s)	12, 390
DraI	TTTAAA	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	4 cut(s)	90, 308, 359, 384
Eco88I	CYCGRG	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	359, 384
EcoRII	CCWGG	1 cut(s)	462
EcoRV	GATATC	1 cut(s)	27
FaeI	CATG	1 cut(s)	158
FaiI	YATR	8 cut(s)	57, 102, 104, 156, 243, 356, 371, 404
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	6
FokI	GGATG	2 cut(s)	36, 449
FspBI	CTAG	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	338, 467
HapII	CCGG	4 cut(s)	10, 180, 257, 441
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	4 cut(s)	85, 186, 332, 481
HpaII	CCGG	4 cut(s)	10, 180, 257, 441
HphI	GGTGA	2 cut(s)	140, 452
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	90, 301, 312
Hpy188III	TCNNGA	2 cut(s)	16, 503
Hpy8I	GTNNAC	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	70, 317, 347, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 344
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	160
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	158
KflI	GGGWCCC	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	12, 390
LpnPI	CCDG	6 cut(s)	23, 193, 270, 449, 454, 476
LweI	GCATC	2 cut(s)	58, 427
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	2 cut(s)	14, 392
MboI	GATC	2 cut(s)	12, 390
MboII	GAAGA	2 cut(s)	181, 484
MluCI	AATT	3 cut(s)	131, 286, 294
MlyI	GAGTC	2 cut(s)	94, 341
MmeI	TCCRAC	2 cut(s)	68, 217
MnlI	CCTC	6 cut(s)	12, 39, 67, 349, 375, 397
MseI	TTAA	2 cut(s)	251, 290
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	4 cut(s)	10, 180, 257, 441
MspR9I	CCNGG	2 cut(s)	181, 464
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	46, 344
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	12, 390
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	3 cut(s)	360, 361, 411
NmuCI	GTSAC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	186, 481
PleI	GAGTC	2 cut(s)	93, 340
PpsI	GAGTC	2 cut(s)	93, 340
PpuMI	RGGWCCY	2 cut(s)	359, 384
Psp5II	RGGWCCY	2 cut(s)	359, 384
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	3 cut(s)	360, 361, 411
PspPI	GGNCC	4 cut(s)	90, 308, 359, 384
PspPPI	RGGWCCY	2 cut(s)	359, 384
RseI	CAYNNNNRTG	1 cut(s)	54
Rsr2I	CGGWCCG	1 cut(s)	308
RsrII	CGGWCCG	1 cut(s)	308
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	251, 290
Sau3AI	GATC	2 cut(s)	12, 390
Sau96I	GGNCC	4 cut(s)	90, 308, 359, 384
SchI	GAGTC	2 cut(s)	94, 341
ScrFI	CCNGG	2 cut(s)	181, 464
SetI	ASST	5 cut(s)	42, 78, 163, 201, 386
SfaNI	GCATC	2 cut(s)	58, 427
SinI	GGWCC	4 cut(s)	90, 308, 359, 384
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	3 cut(s)	131, 286, 294
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	179, 462
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	6, 389
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	3 cut(s)	131, 286, 294
TfiI	GAWTC	2 cut(s)	186, 481
Tru1I	TTAA	2 cut(s)	251, 290
Tru9I	TTAA	2 cut(s)	251, 290
TseFI	GTSAC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	4 cut(s)	50, 106, 140, 263
VpaK11BI	GGWCC	4 cut(s)	90, 308, 359, 384
XapI	RAATTY	2 cut(s)	286, 294
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	80
ZraI	GACGTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.