Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

55293241 .. 55300352

Gene Structure 7112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTTACAATTGCTTTAAAAGGGTCCGCTTCCTGCCCACTACTTCAAACTCTTCTCGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCCGCTCGTGTCTCCACCGGGGTCGTCGCAGCAATTGGAAGACCCTACAAGACTATCGACCTTGACATTATCATATCTAGAGTTCCTGTTGGAAGTACCGATGATCAACATTCAGCTCACACATCTCCTTGTTCATCAATTGTTCCATCATCAAGCGCAAGATGGTCGACCGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGACCAAGATTTATATAATATTGGAGTTCATTACAGGTGGTGAATTGTTTGATAAAATCGTTCATCATGGACGTCTTAGCGAAAGTGAAGCCGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTTAATGGTTGTTGAGATGCCGGTCAAGGAAACAAAAGTCACCAGGCCACCAACAAAGAGAATCCCTTTTTCTTCCACTATCTTGAGTGACGCCAAAGGAAGAAAAAGATTCTCCCATTTTCTGCTTCACTCTCACTCTCTCTTCCGTCTTCATCCTCTTCGAAACACAGTTGTTCGAGTCTCTTCTCCTCTCTGGGCCTTGTTTGCCGTGTGTGAGTTGAGAGGCATATCTTTGGTTGCTACCCTCGATCGGAACTGCAGTCAATCTTGTAATTTCTTTGGGGACATCTTCATGATCTTTCATGTTTACAATTGCTTTAAAAGGGTCCGCTTCCCTGCCCACTACTTCAAACTCTTCTCGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCCGCCGTGTCTCCACCGGGGTCGTCGCAGCAATTGGAAGACCCTACAAGACTATCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

312

Amino Acids

34.89

Weight (kDa)

9.24

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	412
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	2 cut(s)	257, 338
AciI	CCGC	4 cut(s)	27, 93, 811, 878
AcyI	GRCGYC	2 cut(s)	409, 573
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	2 cut(s)	477, 732
AgsI	TTSAA	4 cut(s)	47, 80, 832, 865
AjnI	CCWGG	1 cut(s)	524
AluBI	AGCT	3 cut(s)	206, 290, 447
AluI	AGCT	3 cut(s)	206, 290, 447
Alw26I	GTCTC	3 cut(s)	106, 667, 890
AoxI	GGCC	2 cut(s)	527, 678
ApeKI	GCWGC	2 cut(s)	119, 903
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	24, 678, 808
AsuC2I	CCSGG	2 cut(s)	109, 893
AsuHPI	GGTGA	2 cut(s)	389, 514
AsuII	TTCGAA	1 cut(s)	643
AvaII	GGWCC	2 cut(s)	24, 808
BauI	CACGAG	2 cut(s)	96, 321
BbsI	GAAGAC	3 cut(s)	136, 623, 920
BbvI	GCAGC	2 cut(s)	131, 915
BccI	CCATC	3 cut(s)	244, 246, 448
BceAI	ACGGC	2 cut(s)	674, 865
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	1 cut(s)	526
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	2 cut(s)	109, 893
BcoDI	GTCTC	3 cut(s)	106, 667, 890
BfaI	CTAG	2 cut(s)	168, 330
BfmI	CTRYAG	1 cut(s)	739
BisI	GCNGC	2 cut(s)	120, 904
BlsI	GCNGC	2 cut(s)	121, 905
Bme1390I	CCNGG	3 cut(s)	109, 526, 893
Bme18I	GGWCC	2 cut(s)	24, 808
BmgT120I	GGNCC	3 cut(s)	24, 678, 808
BmiI	GGNNCC	2 cut(s)	25, 809
BmrFI	CCNGG	3 cut(s)	109, 526, 893
BmsI	GCATC	2 cut(s)	308, 489
BpiI	GAAGAC	3 cut(s)	136, 623, 920
Bpu14I	TTCGAA	1 cut(s)	643
BpuEI	CTTGAG	1 cut(s)	586
BpuMI	CCSGG	2 cut(s)	109, 893
BsaHI	GRCGYC	2 cut(s)	409, 573
BsaJI	CCNNGG	2 cut(s)	108, 892
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 732
Bse118I	RCCGGY	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	2 cut(s)	108, 892
BseGI	GGATG	4 cut(s)	89, 299, 634, 874
BseLI	CCNNNNNNNGG	2 cut(s)	477, 732
BseRI	GAGGAG	1 cut(s)	660
BseXI	GCAGC	2 cut(s)	131, 915
Bsh1285I	CGRYCG	2 cut(s)	261, 733
BshFI	GGCC	2 cut(s)	529, 680
BsiEI	CGRYCG	2 cut(s)	261, 733
BsiSI	CCGG	4 cut(s)	108, 429, 503, 892
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	2 cut(s)	477, 732
BsmAI	GTCTC	3 cut(s)	106, 667, 890
BsmFI	GGGAC	1 cut(s)	779
BsnI	GGCC	2 cut(s)	529, 680
Bsp119I	TTCGAA	1 cut(s)	643
Bsp143I	GATC	4 cut(s)	193, 262, 730, 777
BspACI	CCGC	4 cut(s)	27, 93, 811, 878
BspANI	GGCC	2 cut(s)	529, 680
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	2 cut(s)	25, 809
BspMAI	CTGCAG	1 cut(s)	743
BspT104I	TTCGAA	1 cut(s)	643
BsrBI	CCGCTC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	502
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	108, 892
BssMI	GATC	4 cut(s)	193, 262, 730, 777
BssNI	GRCGYC	2 cut(s)	409, 573
BssSI	CACGAG	2 cut(s)	96, 321
Bst2BI	CACGAG	2 cut(s)	96, 321
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	5 cut(s)	57, 629, 645, 670, 842
BstACI	GRCGYC	2 cut(s)	409, 573
BstBI	TTCGAA	1 cut(s)	643
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	4 cut(s)	89, 299, 634, 874
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	4 cut(s)	196, 265, 733, 780
BstMAI	GTCTC	3 cut(s)	106, 667, 890
BstMBI	GATC	4 cut(s)	193, 262, 730, 777
BstMCI	CGRYCG	2 cut(s)	261, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 686
BstNI	CCWGG	1 cut(s)	526
BstSCI	CCNGG	3 cut(s)	107, 524, 891
BstSFI	CTRYAG	1 cut(s)	739
BstV1I	GCAGC	2 cut(s)	131, 915
BstV2I	GAAGAC	3 cut(s)	136, 623, 920
BsuRI	GGCC	2 cut(s)	529, 680
BtsCI	GGATG	4 cut(s)	89, 299, 634, 874
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	3 cut(s)	24, 678, 808
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	3 cut(s)	404, 775, 785
CviJI	RGCY	6 cut(s)	206, 290, 428, 447, 529, 680
CviKI_1	RGCY	6 cut(s)	206, 290, 428, 447, 529, 680
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	4 cut(s)	195, 264, 732, 779
DpnII	GATC	4 cut(s)	193, 262, 730, 777
DraI	TTTAAA	2 cut(s)	18, 802
Eam1104I	CTCTTC	5 cut(s)	57, 629, 645, 670, 842
EarI	CTCTTC	5 cut(s)	57, 629, 645, 670, 842
EciI	GGCGGA	1 cut(s)	867
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	24, 808
EcoRII	CCWGG	1 cut(s)	524
EcoRV	GATATC	1 cut(s)	277
FaeI	CATG	3 cut(s)	407, 778, 788
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	3 cut(s)	403, 774, 784
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	2 cut(s)	257, 338
Fnu4HI	GCNGC	2 cut(s)	120, 904
FokI	GGATG	4 cut(s)	76, 286, 621, 861
Fsp4HI	GCNGC	2 cut(s)	120, 904
FspBI	CTAG	2 cut(s)	168, 330
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	120, 904
HaeIII	GGCC	2 cut(s)	529, 680
HapII	CCGG	4 cut(s)	108, 429, 503, 892
HgaI	GACGC	1 cut(s)	581
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	2 cut(s)	409, 573
Hin1II	CATG	3 cut(s)	407, 778, 788
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	2 cut(s)	258, 339
HindII	GTYRAC	2 cut(s)	258, 339
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	5 cut(s)	335, 434, 543, 591, 660
HpaII	CCGG	4 cut(s)	108, 429, 503, 892
HphI	GGTGA	2 cut(s)	389, 514
Hpy166II	GTNNAC	4 cut(s)	6, 258, 339, 790
Hpy188I	TCNGA	1 cut(s)	735
Hpy188III	TCNNGA	4 cut(s)	168, 266, 565, 775
Hpy8I	GTNNAC	4 cut(s)	6, 258, 339, 790
Hpy99I	CGWCG	2 cut(s)	119, 903
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	320, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 686
HpyF3I	CTNAG	1 cut(s)	413
HpySE526I	ACGT	1 cut(s)	409
Hsp92I	GRCGYC	2 cut(s)	409, 573
Hsp92II	CATG	3 cut(s)	407, 778, 788
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	193, 262, 730, 777
Lsp1109I	GCAGC	2 cut(s)	131, 915
LweI	GCATC	2 cut(s)	308, 489
MaeI	CTAG	2 cut(s)	168, 330
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	520, 569
MalI	GATC	4 cut(s)	195, 264, 732, 779
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	4 cut(s)	193, 262, 730, 777
MfeI	CAATTG	5 cut(s)	9, 123, 228, 793, 907
MluCI	AATT	7 cut(s)	9, 123, 228, 380, 754, 793, 907
MlyI	GAGTC	2 cut(s)	344, 669
MmeI	TCCRAC	2 cut(s)	160, 465
MnlI	CCTC	9 cut(s)	82, 262, 289, 317, 648, 681, 698, 737, 867
MseI	TTAA	3 cut(s)	17, 485, 801
MslI	CAYNNNNRTG	2 cut(s)	304, 773
MspI	CCGG	4 cut(s)	108, 429, 503, 892
MspR9I	CCNGG	3 cut(s)	109, 526, 893
MunI	CAATTG	5 cut(s)	9, 123, 228, 793, 907
MvaI	CCWGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	2 cut(s)	296, 686
NciI	CCSGG	2 cut(s)	109, 893
NdeII	GATC	4 cut(s)	193, 262, 730, 777
NlaIII	CATG	3 cut(s)	407, 778, 788
NlaIV	GGNNCC	2 cut(s)	25, 809
NmuCI	GTSAC	2 cut(s)	520, 569
NspV	TTCGAA	1 cut(s)	643
PagI	TCATGA	1 cut(s)	774
PfeI	GAWTC	3 cut(s)	434, 543, 591
PkrI	GCNGC	2 cut(s)	121, 905
Ple19I	CGATCG	1 cut(s)	733
PleI	GAGTC	2 cut(s)	343, 668
PpsI	GAGTC	2 cut(s)	343, 668
Psp6I	CCWGG	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	2 cut(s)	25, 809
PspPI	GGNCC	3 cut(s)	24, 678, 808
PstI	CTGCAG	1 cut(s)	743
PvuI	CGATCG	1 cut(s)	733
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
RseI	CAYNNNNRTG	2 cut(s)	304, 773
SalI	GTCGAC	2 cut(s)	256, 337
SaqAI	TTAA	3 cut(s)	17, 485, 801
SatI	GCNGC	2 cut(s)	120, 904
Sau3AI	GATC	4 cut(s)	193, 262, 730, 777
Sau96I	GGNCC	3 cut(s)	24, 678, 808
SchI	GAGTC	2 cut(s)	344, 669
ScrFI	CCNGG	3 cut(s)	109, 526, 893
SfaNI	GCATC	2 cut(s)	308, 489
SfcI	CTRYAG	1 cut(s)	739
SfuI	TTCGAA	1 cut(s)	643
SinI	GGWCC	2 cut(s)	24, 808
SmiMI	CAYNNNNRTG	2 cut(s)	304, 773
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	7 cut(s)	9, 123, 228, 380, 754, 793, 907
SsiI	CCGC	4 cut(s)	27, 93, 811, 878
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	2 cut(s)	168, 330
StyD4I	CCNGG	3 cut(s)	107, 524, 891
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	7 cut(s)	147, 257, 338, 643, 658, 729, 931
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	7 cut(s)	9, 123, 228, 380, 754, 793, 907
TfiI	GAWTC	3 cut(s)	434, 543, 591
Tru1I	TTAA	3 cut(s)	17, 485, 801
Tru9I	TTAA	3 cut(s)	17, 485, 801
TseFI	GTSAC	2 cut(s)	520, 569
TseI	GCWGC	2 cut(s)	119, 903
Tsp45I	GTSAC	2 cut(s)	520, 569
TspDTI	ATGAA	7 cut(s)	213, 300, 355, 389, 623, 763, 773
TspGWI	ACGGA	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	24, 808
XbaI	TCTAGA	1 cut(s)	167
XmiI	GTMKAC	2 cut(s)	257, 338
XspI	CTAG	2 cut(s)	168, 330
ZraI	GACGTC	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.