Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

55286256 .. 55293154

Gene Structure 6899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGATCTTTCATGTTTACAATTGCTTTAAAAGGGTCCGCTTCCTGCCCACTACTTCAAACTCTTCTCGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCCGCCGTGTCTCCACCGGGGTCGTCGCAGCAATTGGAAGACCCTACAAGACTATCGACCTTGACATTATCATATCTAGAGTTCTGTTGGAAGTACCGTTGGAAGTACCGATGATCAAGTACTATTGTCTCTTTCACATGATCAACCATGTAATAGCATTCAGCTCACACATCTCCTTGTTCATCAATTGTTCCATCATCAAGCGCAAGATGGTCGACCGGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAAAGCCGGAAAATCTTTTGCTTCATTCTCTTGGAAATTTAAGAATTTCAGATTTCGGTCTAAGTGCATTGCTCGAACAAGGAGTCACCTCCTTCGCACAACTTATGGGACCCCTAACTATGTTGCACCCGAGGTCCTCGGTCACAAGGGTTATGATGGTGCCGTGGCAGTATGTTTGGTCCCGTGGGGTCATCCTTTATGTTCTCATGGCTGGATATCTTCCATTTGATGAGCTTGACCTGACCACACTATATATAATGGTTGTTGAGATGCCGGTCAAGGAAACAAAAGTCACAGTGCCACCAACAAAGAGAATCCCTTTTTCTTCCACTATCTTGAGTGACGCCAAAGGAAGAAAAAGATTCTCCCATTTTCTGCTTCACTCTCACTCTCTCTTCCGTCTTCATCCTCTTCGAAACACAGCTTGTTCAGTGTCTCTTCTCCTCTCGGGCCTTGTTTGCCGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

301

Amino Acids

34.64

Weight (kDa)

9.93

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	127 - 255	8.5e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	129 - 242	2.2e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	37, 103
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	2 cut(s)	472, 480
AcyI	GRCGYC	1 cut(s)	780
AfaI	GTAC	3 cut(s)	195, 207, 221
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	57, 90
AluBI	AGCT	5 cut(s)	264, 349, 385, 670, 860
AluI	AGCT	5 cut(s)	264, 349, 385, 670, 860
Alw26I	GTCTC	3 cut(s)	115, 233, 876
AlwI	GGATC	1 cut(s)	329
Ama87I	CYCGRG	2 cut(s)	565, 883
AoxI	GGCC	1 cut(s)	886
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	472, 480
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	5 cut(s)	34, 545, 570, 615, 886
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	514
AsuII	TTCGAA	1 cut(s)	850
AvaI	CYCGRG	2 cut(s)	565, 883
AvaII	GGWCC	4 cut(s)	34, 545, 570, 615
BanI	GGYRCC	1 cut(s)	595
BauI	CACGAG	1 cut(s)	380
BbsI	GAAGAC	2 cut(s)	145, 830
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	4 cut(s)	302, 304, 386, 586
BceAI	ACGGC	3 cut(s)	90, 583, 882
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BclI	TGATCA	2 cut(s)	213, 240
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	3 cut(s)	115, 233, 876
BfaI	CTAG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	4 cut(s)	34, 545, 570, 615
BmeT110I	CYCGRG	2 cut(s)	565, 883
BmgT120I	GGNCC	5 cut(s)	34, 545, 570, 615, 886
BmiI	GGNNCC	5 cut(s)	35, 546, 547, 597, 617
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	367, 696
BpiI	GAAGAC	2 cut(s)	145, 830
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	1 cut(s)	793
BpuMI	CCSGG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	780
BsaJI	CCNNGG	5 cut(s)	117, 566, 573, 599, 619
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse118I	RCCGGY	1 cut(s)	709
Bse3DI	GCAATG	1 cut(s)	503
BseDI	CCNNGG	5 cut(s)	117, 566, 573, 599, 619
BseGI	GGATG	4 cut(s)	99, 358, 627, 841
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	503
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	1 cut(s)	888
BshNI	GGYRCC	1 cut(s)	595
BsiEI	CGRYCG	1 cut(s)	319
BsiHKCI	CYCGRG	2 cut(s)	565, 883
BsiSI	CCGG	4 cut(s)	117, 319, 443, 710
BslFI	GGGAC	2 cut(s)	558, 601
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	3 cut(s)	115, 233, 876
BsmFI	GGGAC	2 cut(s)	558, 601
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	888
BsoBI	CYCGRG	2 cut(s)	565, 883
Bsp119I	TTCGAA	1 cut(s)	850
Bsp143I	GATC	4 cut(s)	3, 213, 240, 321
BspACI	CCGC	2 cut(s)	37, 103
BspANI	GGCC	1 cut(s)	888
BspLI	GGNNCC	5 cut(s)	35, 546, 547, 597, 617
BspPI	GGATC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	850
BspT107I	GGYRCC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	709
BssAI	RCCGGY	1 cut(s)	709
BssECI	CCNNGG	5 cut(s)	117, 566, 573, 599, 619
BssMI	GATC	4 cut(s)	3, 213, 240, 321
BssNI	GRCGYC	1 cut(s)	780
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	198, 733
Bst6I	CTCTTC	4 cut(s)	67, 836, 852, 879
BstACI	GRCGYC	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	850
BstDEI	CTNAG	1 cut(s)	497
BstDSI	CCRYGG	2 cut(s)	599, 619
BstF5I	GGATG	4 cut(s)	99, 358, 627, 841
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	4 cut(s)	6, 216, 243, 324
BstMAI	GTCTC	3 cut(s)	115, 233, 876
BstMBI	GATC	4 cut(s)	3, 213, 240, 321
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 894
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	2 cut(s)	145, 830
BsuRI	GGCC	1 cut(s)	888
BtgI	CCRYGG	2 cut(s)	599, 619
BtsCI	GGATG	4 cut(s)	99, 358, 627, 841
BtsIMutI	CAGTG	2 cut(s)	738, 873
CfoI	GCGC	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	709
Cfr13I	GGNCC	5 cut(s)	34, 545, 570, 615, 886
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	3 cut(s)	194, 206, 220
CviAII	CATG	4 cut(s)	11, 238, 248, 643
CviJI	RGCY	8 cut(s)	264, 349, 385, 442, 647, 670, 860, 888
CviKI_1	RGCY	8 cut(s)	264, 349, 385, 442, 647, 670, 860, 888
CviQI	GTAC	3 cut(s)	194, 206, 220
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	4 cut(s)	5, 215, 242, 323
DpnII	GATC	4 cut(s)	3, 213, 240, 321
DraI	TTTAAA	2 cut(s)	28, 438
Eam1104I	CTCTTC	4 cut(s)	67, 836, 852, 879
EarI	CTCTTC	4 cut(s)	67, 836, 852, 879
EciI	GGCGGA	1 cut(s)	92
Eco32I	GATATC	2 cut(s)	336, 653
Eco47I	GGWCC	4 cut(s)	34, 545, 570, 615
Eco88I	CYCGRG	2 cut(s)	565, 883
EcoO109I	RGGNCCY	2 cut(s)	545, 570
EcoRV	GATATC	2 cut(s)	336, 653
FaeI	CATG	4 cut(s)	14, 241, 251, 646
FaqI	GGGAC	2 cut(s)	558, 601
FatI	CATG	4 cut(s)	10, 237, 247, 642
FbaI	TGATCA	2 cut(s)	213, 240
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	4 cut(s)	86, 345, 614, 828
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	888
HapII	CCGG	4 cut(s)	117, 319, 443, 710
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	780
Hin1II	CATG	4 cut(s)	14, 241, 251, 646
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	519, 750, 798
HpaII	CCGG	4 cut(s)	117, 319, 443, 710
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	16, 316
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	3 cut(s)	177, 325, 772
Hpy8I	GTNNAC	2 cut(s)	16, 316
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	2 cut(s)	198, 733
HpyCH4V	TGCA	3 cut(s)	379, 503, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 894
HpyF3I	CTNAG	1 cut(s)	497
Hsp92I	GRCGYC	1 cut(s)	780
Hsp92II	CATG	4 cut(s)	14, 241, 251, 646
HspAI	GCGC	1 cut(s)	304
KflI	GGGWCCC	1 cut(s)	545
Ksp22I	TGATCA	2 cut(s)	213, 240
Kzo9I	GATC	4 cut(s)	3, 213, 240, 321
LpnPI	CCDG	7 cut(s)	56, 130, 332, 456, 633, 689, 723
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	2 cut(s)	367, 696
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	4 cut(s)	520, 577, 727, 776
MalI	GATC	4 cut(s)	5, 215, 242, 323
MboI	GATC	4 cut(s)	3, 213, 240, 321
MboII	GAAGA	9 cut(s)	54, 150, 647, 753, 801, 823, 830, 839, 866
MfeI	CAATTG	3 cut(s)	19, 132, 286
MluCI	AATT	5 cut(s)	19, 132, 286, 472, 480
MlyI	GAGTC	1 cut(s)	528
MmeI	TCCRAC	2 cut(s)	168, 180
MnlI	CCTC	8 cut(s)	92, 321, 348, 535, 561, 583, 855, 890
MseI	TTAA	3 cut(s)	27, 437, 476
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	4 cut(s)	117, 319, 443, 710
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	3 cut(s)	19, 132, 286
Mva1269I	GAATGC	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	355, 894
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	4 cut(s)	3, 213, 240, 321
NlaIII	CATG	4 cut(s)	14, 241, 251, 646
NlaIV	GGNNCC	5 cut(s)	35, 546, 547, 597, 617
NmuCI	GTSAC	4 cut(s)	520, 577, 727, 776
NspV	TTCGAA	1 cut(s)	850
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	750, 798
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
PpuMI	RGGWCCY	2 cut(s)	545, 570
Psp5II	RGGWCCY	2 cut(s)	545, 570
PspN4I	GGNNCC	5 cut(s)	35, 546, 547, 597, 617
PspPI	GGNCC	5 cut(s)	34, 545, 570, 615, 886
PspPPI	RGGWCCY	2 cut(s)	545, 570
RsaI	GTAC	3 cut(s)	195, 207, 221
RsaNI	GTAC	3 cut(s)	194, 206, 220
RseI	CAYNNNNRTG	1 cut(s)	363
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	27, 437, 476
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	4 cut(s)	3, 213, 240, 321
Sau96I	GGNCC	5 cut(s)	34, 545, 570, 615, 886
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	1 cut(s)	118
SfaNI	GCATC	2 cut(s)	367, 696
SfuI	TTCGAA	1 cut(s)	850
SinI	GGWCC	4 cut(s)	34, 545, 570, 615
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
Sse9I	AATT	5 cut(s)	19, 132, 286, 472, 480
SsiI	CCGC	2 cut(s)	37, 103
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	198, 733
TaqI	TCGA	4 cut(s)	156, 315, 510, 850
TaqII	GACCGA	2 cut(s)	482, 565
TasI	AATT	5 cut(s)	19, 132, 286, 472, 480
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	750, 798
Tru1I	TTAA	3 cut(s)	27, 437, 476
Tru9I	TTAA	3 cut(s)	27, 437, 476
TscAI	CASTG	2 cut(s)	738, 873
TseFI	GTSAC	4 cut(s)	520, 577, 727, 776
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	4 cut(s)	520, 577, 727, 776
TspDTI	ATGAA	4 cut(s)	271, 359, 449, 830
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	2 cut(s)	738, 873
VpaK11BI	GGWCC	4 cut(s)	34, 545, 570, 615
XapI	RAATTY	2 cut(s)	472, 480
XbaI	TCTAGA	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.