Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

55300487 .. 55307653

Gene Structure 7167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGTCGACCGGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCAGACCAAGATTTATATAATATTGGAGTTCATTACAGGTGGTGAATTGTTTGATAAAATCGTTCATCATGGACGTCTTAGCGAAAGTGAAGCCAGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAAAGCCGGAAAATCTTTTGCTTCATTCTCTTGGAAATTTAAGAATTTCAGATTTCGGTCTAAGTGCATTGCCCGAACAAGGAGTCACCTCCTTCGCACAACTTATGGGACCCCTAACTATGTTGCACCCGAGGTCCTCGATCACAAGGGTTATGATGGTGCCGTGGCAGATGTTTGGTCCCGTGGGAGGCATATCTTTGGTTGCTACCCTCGATCAGAACTGCAGTCAATCTTGTAATTTCTTTGGGGACATCTTCATGATCTTTCATGTTTACAATTGCTTTAAAAGGGTCCGCTTCCTGCCCACTACTTCAAACTCTTCTCGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCCGTCGTGTCTCCACCGGGGTCGTCGCAGCAATTGGAAGACCCTACAAGACTATCGACCTTGACATTATCATATCTAGAGTTCCCGTTGGAAGTACCGATGATCAAGTACTATTGTCTCTTTCACATGATCAACCATGTAATAGCATTCAGCTCACACATCTCCTTGTTCATCAATTGTTCCATCATCAAGCGCAAGATGGTCGACCAGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGACCAAGATTTATATAATATTGGAGTTCATTACGGGTGGTGAATTGTTTGATAAAATCGTTCATCATGGACGTCTTAGCGAAAGTGAAGCCGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

351

Amino Acids

39.54

Weight (kDa)

6.46

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 112	5.4e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 107	1.5e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	163, 967
AccB1I	GGYRCC	1 cut(s)	409
AccI	GTMKAC	3 cut(s)	6, 811, 893
AciI	CCGC	1 cut(s)	544
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	2 cut(s)	286, 294
AcyI	GRCGYC	2 cut(s)	160, 964
AfaI	GTAC	2 cut(s)	703, 717
AfiI	CCNNNNNNNGG	4 cut(s)	229, 329, 437, 1032
AgsI	TTSAA	2 cut(s)	564, 597
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	5 cut(s)	40, 199, 760, 845, 1002
AluI	AGCT	5 cut(s)	40, 199, 760, 845, 1002
Alw26I	GTCTC	2 cut(s)	622, 729
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	286, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	4 cut(s)	359, 384, 428, 541
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	3 cut(s)	140, 328, 944
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	4 cut(s)	359, 384, 428, 541
BanI	GGYRCC	1 cut(s)	409
BauI	CACGAG	2 cut(s)	71, 876
BbsI	GAAGAC	1 cut(s)	652
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	5 cut(s)	200, 400, 798, 800, 1003
BceAI	ACGGC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	1 cut(s)	181
BclI	TGATCA	2 cut(s)	709, 736
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	622, 729
BfaI	CTAG	3 cut(s)	80, 684, 885
BfmI	CTRYAG	1 cut(s)	472
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	2 cut(s)	181, 625
Bme18I	GGWCC	4 cut(s)	359, 384, 428, 541
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	4 cut(s)	359, 384, 428, 541
BmiI	GGNNCC	5 cut(s)	360, 361, 411, 430, 542
BmrFI	CCNGG	2 cut(s)	181, 625
BmsI	GCATC	2 cut(s)	58, 863
BpiI	GAAGAC	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	625
BsaHI	GRCGYC	2 cut(s)	160, 964
BsaJI	CCNNGG	4 cut(s)	380, 413, 432, 624
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 329, 437, 1032
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	4 cut(s)	380, 413, 432, 624
BseGI	GGATG	3 cut(s)	49, 606, 854
BseLI	CCNNNNNNNGG	4 cut(s)	229, 329, 437, 1032
BseMI	GCAATG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	647
Bsh1285I	CGRYCG	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	4 cut(s)	10, 257, 624, 984
BslFI	GGGAC	3 cut(s)	372, 414, 512
BslI	CCNNNNNNNGG	4 cut(s)	229, 329, 437, 1032
BsmAI	GTCTC	2 cut(s)	622, 729
BsmFI	GGGAC	3 cut(s)	372, 414, 512
BsmI	GAATGC	1 cut(s)	753
BsoBI	CYCGRG	1 cut(s)	379
Bsp143I	GATC	7 cut(s)	12, 390, 463, 510, 709, 736, 817
BspACI	CCGC	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	5 cut(s)	360, 361, 411, 430, 542
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	317
BssECI	CCNNGG	4 cut(s)	380, 413, 432, 624
BssMI	GATC	7 cut(s)	12, 390, 463, 510, 709, 736, 817
BssNI	GRCGYC	2 cut(s)	160, 964
BssSI	CACGAG	2 cut(s)	71, 876
Bst2BI	CACGAG	2 cut(s)	71, 876
Bst2UI	CCWGG	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	574
BstACI	GRCGYC	2 cut(s)	160, 964
BstDEI	CTNAG	3 cut(s)	164, 311, 968
BstDSI	CCRYGG	2 cut(s)	413, 432
BstF5I	GGATG	3 cut(s)	49, 606, 854
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	7 cut(s)	15, 393, 466, 513, 712, 739, 820
BstMAI	GTCTC	2 cut(s)	622, 729
BstMBI	GATC	7 cut(s)	12, 390, 463, 510, 709, 736, 817
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 851
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	179, 623
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	647
BstV2I	GAAGAC	1 cut(s)	652
BtgI	CCRYGG	2 cut(s)	413, 432
BtsCI	GGATG	3 cut(s)	49, 606, 854
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	4 cut(s)	359, 384, 428, 541
Csp6I	GTAC	2 cut(s)	702, 716
CviAII	CATG	6 cut(s)	155, 508, 518, 734, 744, 959
CviJI	RGCY	8 cut(s)	40, 179, 199, 256, 760, 845, 983, 1002
CviKI_1	RGCY	8 cut(s)	40, 179, 199, 256, 760, 845, 983, 1002
CviQI	GTAC	2 cut(s)	702, 716
DdeI	CTNAG	3 cut(s)	164, 311, 968
DpnI	GATC	7 cut(s)	14, 392, 465, 512, 711, 738, 819
DpnII	GATC	7 cut(s)	12, 390, 463, 510, 709, 736, 817
DraI	TTTAAA	2 cut(s)	252, 535
Eam1104I	CTCTTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	574
Eco32I	GATATC	2 cut(s)	27, 832
Eco47I	GGWCC	4 cut(s)	359, 384, 428, 541
Eco88I	CYCGRG	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	359, 384
EcoRII	CCWGG	1 cut(s)	179
EcoRV	GATATC	2 cut(s)	27, 832
FaeI	CATG	6 cut(s)	158, 511, 521, 737, 747, 962
FaqI	GGGAC	3 cut(s)	372, 414, 512
FatI	CATG	6 cut(s)	154, 507, 517, 733, 743, 958
FbaI	TGATCA	2 cut(s)	709, 736
FblI	GTMKAC	3 cut(s)	6, 811, 893
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	3 cut(s)	36, 593, 841
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	3 cut(s)	80, 684, 885
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	1 cut(s)	636
HapII	CCGG	4 cut(s)	10, 257, 624, 984
HhaI	GCGC	1 cut(s)	802
Hin1I	GRCGYC	2 cut(s)	160, 964
Hin1II	CATG	6 cut(s)	158, 511, 521, 737, 747, 962
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	3 cut(s)	7, 812, 894
HindII	GTYRAC	3 cut(s)	7, 812, 894
HindIII	AAGCTT	2 cut(s)	38, 843
HinfI	GANTC	5 cut(s)	85, 186, 333, 890, 989
HpaII	CCGG	4 cut(s)	10, 257, 624, 984
HphI	GGTGA	3 cut(s)	140, 328, 944
Hpy166II	GTNNAC	4 cut(s)	7, 523, 812, 894
Hpy188I	TCNGA	3 cut(s)	90, 301, 468
Hpy188III	TCNNGA	4 cut(s)	16, 508, 684, 821
Hpy8I	GTNNAC	4 cut(s)	7, 523, 812, 894
Hpy99I	CGWCG	2 cut(s)	615, 635
HpyAV	CCTTC	1 cut(s)	352
HpyCH4IV	ACGT	2 cut(s)	160, 964
HpyCH4V	TGCA	5 cut(s)	70, 317, 376, 474, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 851
HpyF3I	CTNAG	3 cut(s)	164, 311, 968
HpySE526I	ACGT	2 cut(s)	160, 964
Hsp92I	GRCGYC	2 cut(s)	160, 964
Hsp92II	CATG	6 cut(s)	158, 511, 521, 737, 747, 962
HspAI	GCGC	1 cut(s)	800
KflI	GGGWCCC	1 cut(s)	359
Ksp22I	TGATCA	2 cut(s)	709, 736
Kzo9I	GATC	7 cut(s)	12, 390, 463, 510, 709, 736, 817
LpnPI	CCDG	9 cut(s)	23, 108, 166, 193, 270, 563, 637, 828, 997
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	2 cut(s)	58, 863
MaeI	CTAG	3 cut(s)	80, 684, 885
MaeII	ACGT	2 cut(s)	160, 964
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	7 cut(s)	14, 392, 465, 512, 711, 738, 819
MboI	GATC	7 cut(s)	12, 390, 463, 510, 709, 736, 817
MboII	GAAGA	5 cut(s)	181, 496, 561, 657, 984
MfeI	CAATTG	3 cut(s)	526, 639, 782
MluCI	AATT	8 cut(s)	131, 286, 294, 487, 526, 639, 782, 935
MlyI	GAGTC	3 cut(s)	94, 342, 899
MmeI	TCCRAC	3 cut(s)	217, 676, 1020
MseI	TTAA	4 cut(s)	251, 290, 534, 1054
MslI	CAYNNNNRTG	3 cut(s)	54, 506, 859
MspI	CCGG	4 cut(s)	10, 257, 624, 984
MspR9I	CCNGG	2 cut(s)	181, 625
MunI	CAATTG	3 cut(s)	526, 639, 782
Mva1269I	GAATGC	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	46, 851
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	7 cut(s)	12, 390, 463, 510, 709, 736, 817
NlaIII	CATG	6 cut(s)	158, 511, 521, 737, 747, 962
NlaIV	GGNNCC	5 cut(s)	360, 361, 411, 430, 542
NmuCI	GTSAC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	507
PctI	GAATGC	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	186, 989
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	3 cut(s)	93, 341, 898
PpsI	GAGTC	3 cut(s)	93, 341, 898
PpuMI	RGGWCCY	2 cut(s)	359, 384
Psp5II	RGGWCCY	2 cut(s)	359, 384
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	5 cut(s)	360, 361, 411, 430, 542
PspPI	GGNCC	4 cut(s)	359, 384, 428, 541
PspPPI	RGGWCCY	2 cut(s)	359, 384
PstI	CTGCAG	1 cut(s)	476
RsaI	GTAC	2 cut(s)	703, 717
RsaNI	GTAC	2 cut(s)	702, 716
RseI	CAYNNNNRTG	3 cut(s)	54, 506, 859
SalI	GTCGAC	3 cut(s)	5, 810, 892
SaqAI	TTAA	4 cut(s)	251, 290, 534, 1054
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	7 cut(s)	12, 390, 463, 510, 709, 736, 817
Sau96I	GGNCC	4 cut(s)	359, 384, 428, 541
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	3 cut(s)	94, 342, 899
ScrFI	CCNGG	2 cut(s)	181, 625
SfaNI	GCATC	2 cut(s)	58, 863
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	4 cut(s)	359, 384, 428, 541
SmiMI	CAYNNNNRTG	3 cut(s)	54, 506, 859
Sse9I	AATT	8 cut(s)	131, 286, 294, 487, 526, 639, 782, 935
SsiI	CCGC	1 cut(s)	544
SspI	AATATT	2 cut(s)	108, 912
SspMI	CTAG	3 cut(s)	80, 684, 885
StyD4I	CCNGG	2 cut(s)	179, 623
TaiI	ACGT	2 cut(s)	163, 967
TaqI	TCGA	6 cut(s)	6, 389, 462, 663, 811, 893
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	8 cut(s)	131, 286, 294, 487, 526, 639, 782, 935
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	2 cut(s)	186, 989
Tru1I	TTAA	4 cut(s)	251, 290, 534, 1054
Tru9I	TTAA	4 cut(s)	251, 290, 534, 1054
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	334
TspGWI	ACGGA	1 cut(s)	599
VpaK11BI	GGWCC	4 cut(s)	359, 384, 428, 541
XapI	RAATTY	2 cut(s)	286, 294
XbaI	TCTAGA	1 cut(s)	683
XmiI	GTMKAC	3 cut(s)	6, 811, 893
XspI	CTAG	3 cut(s)	80, 684, 885
ZraI	GACGTC	2 cut(s)	161, 965
ZrmI	AGTACT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.