Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

4892158 .. 4893231

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAGCCTCAACTCATCCGCCTCAAACTCAACTCTCTGCTTCACAAACGTAAAAAACACCTCGAAACTCGCGCTGCCCAGCTCCTCAGTGATCACTCCCTCCCACCATCGGCCGGCCATGAAAGCTTGAAGAGCTTGGTCTTGAATCTATCAAGAATTTGGCTCGATCAGCGGATGTGGATGAGGGTATCTTCTGAGTGGTCATTTAGAAACCCAGAAGCATCAGGGCTTCCGACCTGCGCCATTAAGATCATCGACAAAGAGAAGATCCTCAAGGGTCGTTTGATCGCCCACATCAAACGCAAAATCTCCATCTTCTGCCGCGTCCGCCACCCCAATATCGTCCAGCTCTTCGAAGTAATCGCCACCAAGGCCAAGATCTACTTCGTCATGGAGTACGTCCGCTGCGGCGAGCTCTTCAACAAGGTCGCCAAGGGCCAGCTCAAAGAGGAGGTTGCTAGAAAGTACTTCCAGCAATTAATCTCAGCCGTTGGATTCTTCCATGCCCGAGGAGTCTACCATCGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

177

Amino Acids

20.51

Weight (kDa)

10.4

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	79 - 175	8.5e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	80 - 175	1.5e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	3 cut(s)	72, 324, 525
AciI	CCGC	6 cut(s)	19, 172, 322, 328, 403, 408
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	2 cut(s)	111, 115
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	2 cut(s)	398, 467
AfiI	CCNNNNNNNGG	2 cut(s)	109, 113
AgsI	TTSAA	3 cut(s)	130, 145, 421
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	6 cut(s)	82, 126, 135, 349, 415, 442
AluI	AGCT	6 cut(s)	82, 126, 135, 349, 415, 442
Alw21I	GWGCWC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	4 cut(s)	111, 115, 372, 436
ApeKI	GCWGC	2 cut(s)	74, 405
ApoI	RAATTY	1 cut(s)	156
AseI	ATTAAT	1 cut(s)	479
AspLEI	GCGC	2 cut(s)	74, 242
AspS9I	GGNCC	1 cut(s)	436
AsuII	TTCGAA	1 cut(s)	354
AvaI	CYCGRG	1 cut(s)	507
BanII	GRGCYC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	61, 392
BccI	CCATC	3 cut(s)	115, 320, 528
BceAI	ACGGC	1 cut(s)	473
BclI	TGATCA	1 cut(s)	91
BfaI	CTAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	4 cut(s)	75, 322, 406, 409
BlsI	GCNGC	4 cut(s)	76, 323, 407, 410
BmcAI	AGTACT	1 cut(s)	467
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	436
BmsI	GCATC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	369, 432, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 113
Bse118I	RCCGGY	1 cut(s)	113
BseDI	CCNNGG	3 cut(s)	369, 432, 508
BseGI	GGATG	3 cut(s)	15, 180, 186
BseLI	CCNNNNNNNGG	2 cut(s)	109, 113
BseMII	CTCAG	3 cut(s)	100, 186, 498
BseRI	GAGGAG	3 cut(s)	74, 464, 525
BseX3I	CGGCCG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	61, 392
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	3 cut(s)	72, 324, 525
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	113, 117, 374, 438
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	109, 113
BsnI	GGCC	4 cut(s)	113, 117, 374, 438
BsoBI	CYCGRG	1 cut(s)	507
Bsp119I	TTCGAA	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	6 cut(s)	91, 166, 249, 267, 285, 378
BspACI	CCGC	6 cut(s)	19, 172, 322, 328, 403, 408
BspANI	GGCC	4 cut(s)	113, 117, 374, 438
BspCNI	CTCAG	3 cut(s)	99, 187, 497
BspFNI	CGCG	3 cut(s)	72, 324, 525
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	262
BspQI	GCTCTTC	3 cut(s)	125, 356, 422
BspT104I	TTCGAA	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	3 cut(s)	369, 432, 508
BssMI	GATC	6 cut(s)	91, 166, 249, 267, 285, 378
BssT1I	CCWWGG	2 cut(s)	369, 432
Bst6I	CTCTTC	3 cut(s)	125, 356, 422
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	115, 413, 440
BstDEI	CTNAG	3 cut(s)	86, 195, 484
BstF5I	GGATG	3 cut(s)	15, 180, 186
BstFNI	CGCG	3 cut(s)	72, 324, 525
BstHHI	GCGC	2 cut(s)	74, 242
BstKTI	GATC	6 cut(s)	94, 169, 252, 270, 288, 381
BstMBI	GATC	6 cut(s)	91, 166, 249, 267, 285, 378
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 132, 169, 327, 371
BstUI	CGCG	3 cut(s)	72, 324, 525
BstV1I	GCAGC	2 cut(s)	61, 392
BstX2I	RGATCY	2 cut(s)	267, 378
BstYI	RGATCY	2 cut(s)	267, 378
BstZI	CGGCCG	1 cut(s)	111
BsuRI	GGCC	4 cut(s)	113, 117, 374, 438
BtgZI	GCGATG	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	15, 180, 186
BtsIMutI	CAGTG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	3 cut(s)	115, 413, 440
CfoI	GCGC	2 cut(s)	74, 242
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	436
CseI	GACGC	2 cut(s)	313, 514
Csp6I	GTAC	2 cut(s)	397, 466
CviAII	CATG	3 cut(s)	119, 391, 503
CviQI	GTAC	2 cut(s)	397, 466
DdeI	CTNAG	3 cut(s)	86, 195, 484
DpnI	GATC	6 cut(s)	93, 168, 251, 269, 287, 380
DpnII	GATC	6 cut(s)	91, 166, 249, 267, 285, 378
EaeI	YGGCCR	2 cut(s)	111, 115
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	3 cut(s)	125, 356, 422
EarI	CTCTTC	3 cut(s)	125, 356, 422
EciI	GGCGGA	2 cut(s)	8, 317
Ecl136II	GAGCTC	1 cut(s)	415
EclXI	CGGCCG	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	369, 432
Eco24I	GRGCYC	1 cut(s)	417
Eco52I	CGGCCG	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	369, 432
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	2 cut(s)	369, 432
FaeI	CATG	3 cut(s)	122, 394, 506
FaiI	YATR	3 cut(s)	120, 392, 504
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	3 cut(s)	118, 390, 502
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	4 cut(s)	75, 322, 406, 409
FokI	GGATG	3 cut(s)	2, 187, 193
FriOI	GRGCYC	1 cut(s)	417
FseI	GGCCGGCC	1 cut(s)	117
Fsp4HI	GCNGC	4 cut(s)	75, 322, 406, 409
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	2 cut(s)	73, 241
GluI	GCNGC	4 cut(s)	75, 322, 406, 409
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	4 cut(s)	113, 117, 374, 438
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	2 cut(s)	313, 514
HhaI	GCGC	2 cut(s)	74, 242
Hin1II	CATG	3 cut(s)	122, 394, 506
Hin6I	GCGC	2 cut(s)	72, 240
HinP1I	GCGC	2 cut(s)	72, 240
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	3 cut(s)	145, 495, 513
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	3 cut(s)	196, 234, 530
Hpy188III	TCNNGA	2 cut(s)	142, 153
Hpy8I	GTNNAC	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	49, 399
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 132, 169, 327, 371
HpyF3I	CTNAG	3 cut(s)	86, 195, 484
HpySE526I	ACGT	2 cut(s)	49, 399
Hsp92II	CATG	3 cut(s)	122, 394, 506
HspAI	GCGC	2 cut(s)	72, 240
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	6 cut(s)	91, 166, 249, 267, 285, 378
LguI	GCTCTTC	3 cut(s)	125, 356, 422
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	8 cut(s)	92, 127, 210, 228, 250, 359, 452, 485
Lsp1109I	GCAGC	2 cut(s)	61, 392
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	2 cut(s)	49, 399
MalI	GATC	6 cut(s)	93, 168, 251, 269, 287, 380
MboI	GATC	6 cut(s)	91, 166, 249, 267, 285, 378
MboII	GAAGA	7 cut(s)	142, 183, 277, 307, 343, 409, 490
MflI	RGATCY	2 cut(s)	267, 378
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	2 cut(s)	156, 476
MlyI	GAGTC	1 cut(s)	522
MmeI	TCCRAC	2 cut(s)	257, 472
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	2 cut(s)	246, 479
MspA1I	CMGCKG	2 cut(s)	172, 405
MspI	CCGG	1 cut(s)	114
MvnI	CGCG	3 cut(s)	72, 324, 525
MwoI	GCNNNNNNNGC	5 cut(s)	123, 132, 169, 327, 371
NaeI	GCCGGC	1 cut(s)	115
NdeII	GATC	6 cut(s)	91, 166, 249, 267, 285, 378
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	3 cut(s)	122, 394, 506
NspV	TTCGAA	1 cut(s)	354
PciSI	GCTCTTC	3 cut(s)	125, 356, 422
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	145, 495
PkrI	GCNGC	4 cut(s)	76, 323, 407, 410
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
PshBI	ATTAAT	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	267, 378
RigI	GGCCGGCC	1 cut(s)	117
RsaI	GTAC	2 cut(s)	398, 467
RsaNI	GTAC	2 cut(s)	397, 466
SacI	GAGCTC	1 cut(s)	417
SapI	GCTCTTC	3 cut(s)	125, 356, 422
SaqAI	TTAA	2 cut(s)	246, 479
SatI	GCNGC	4 cut(s)	75, 322, 406, 409
Sau3AI	GATC	6 cut(s)	91, 166, 249, 267, 285, 378
Sau96I	GGNCC	1 cut(s)	436
ScaI	AGTACT	1 cut(s)	467
SchI	GAGTC	1 cut(s)	522
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	156, 476
SsiI	CCGC	6 cut(s)	19, 172, 322, 328, 403, 408
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	417
StyI	CCWWGG	2 cut(s)	369, 432
TaiI	ACGT	2 cut(s)	52, 402
TaqI	TCGA	4 cut(s)	63, 165, 255, 354
TasI	AATT	2 cut(s)	156, 476
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	2 cut(s)	324, 411
TfiI	GAWTC	2 cut(s)	145, 495
Tru1I	TTAA	2 cut(s)	246, 479
Tru9I	TTAA	2 cut(s)	246, 479
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	2 cut(s)	74, 405
TspDTI	ATGAA	2 cut(s)	17, 135
TspRI	CASTG	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	479
XapI	RAATTY	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.