Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

27062570 .. 27065556

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G261600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGAAAATAAGGGTAAGGTGTTGATGCAAAAGTATGAGATTGGGAGATTGTTAGGCCAAGGAAACTTTGCTAAGGTTTATCATGCAAGGCACCTCCAAACTGGCCAGAATGTAGCCATTAAGGTAATTAACAAAGAGAAGGTTACGAAAGTTGGCCTAACTGATCAAACTAAAAGAGAGATATCTGTTATGAGATTGGTTAAACACCCAAACATAGTGCAGCTTTATGAGGTCATGGCTACCAAAACCAAGATCTACTTTGTTTTGGAATATGTCAAAGGTGGTGAGCTTTTTCACAAGGTATCAAAAGGAAGGCTCAAGGAGGACATGGCAAGGATGTATTTTCAGCAGCTGATCAGTGCTGTTGATTTTTGCCACAGCAGAGGTGTTTATCACCGTGATTTGAAGCCGGAGAACTTGCTGTTAGATGAAAATGGAACATTAAAGATATCAGATTTTGGGTTGAGTGCCCTTGCTGAATCTAAGAGGCAAGATGGCCTATTGCACACAACTTGCGGAACTCCTGCCTATGTAGCTCCTGAAGTTGTAGGTAGAAAAGCCTATGATGGTGAAAAAGCTGACATTTGGTCTTGTGGGGTGATCTTATATGTACTATTGGCTGGTTGCCTGCCATTCCATGATACAAATCTTATACAAATGTATAAGAAAATAGGCAAAGCCGAGTATAAATGCCCCAGTTGGTTTTCAGTTGAAGTGCGCAAGCTTCTGTCAAGAATCCTCAACCCCAACCCAAATAAAAGGATTCTCATTTCAAACGTAATGGAAAGTCCTTGGTTTAGAAAAGGGTTCAGCTCCAAATCCATTACAACTATAACAGAAGTCGAAAAACGGGCTTTGGTGGATGTTGATGCAGCATTTGATAATTGTGACAGCAGTGATCATAATACTGAGGCAAAGCAAGAGTTGGCCAGACCTACCAATTTGAATGCTTTTGATATCATCTCTCTTTCAAGTGGATTTGATTTGTCTGGTTTGTTTATGGGAAAAGATACAAAGAAAGAAGCACAGTTCACATCTGTGCAGTCTGCCTCATCAATTATATCTAAGCTGGAGGACATTGCCCAGCAGCTGAGGCTGAAAGTAAACAAGGATGGAGGGTTATTGAAATTGGAGAAATCCAAGGATGGCAGGAAGGGGGCATTGTCCATAGAGACTGAAATTTTTGAGTTCACTCCATCCTTCTATCTAGTTGAGATGAAGAAATCCAATGGTGATACATTGGAATTTAAGAAGATACTGAAGGAGGATATAAGACCAGCTCTCAAAGATATTGTGTGGGCATGGCAAGGTGAGGAGAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

442

Amino Acids

49.87

Weight (kDa)

9.15

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	719
AccB1I	GGYRCC	1 cut(s)	90
AciI	CCGC	1 cut(s)	516
AcoI	YGGCCR	2 cut(s)	103, 927
AcsI	RAATTY	2 cut(s)	1179, 1244
AcuI	CTGAAG	2 cut(s)	561, 1280
AfaI	GTAC	1 cut(s)	612
AgsI	TTSAA	6 cut(s)	406, 713, 774, 946, 972, 1126
AhdI	GACNNNNNGTC	1 cut(s)	586
AleI	CACNNNNGTG	1 cut(s)	1037
Alw26I	GTCTC	1 cut(s)	1166
AlwNI	CAGNNNCTG	2 cut(s)	352, 1090
AoxI	GGCC	5 cut(s)	55, 103, 154, 496, 927
ApeKI	GCWGC	4 cut(s)	220, 349, 872, 1087
ApoI	RAATTY	2 cut(s)	1179, 1244
AspLEI	GCGC	1 cut(s)	720
AsuHPI	GGTGA	6 cut(s)	296, 386, 581, 610, 1244, 1322
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	2 cut(s)	105, 929
BanI	GGYRCC	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	1091
BbvI	GCAGC	4 cut(s)	232, 361, 884, 1099
BccI	CCATC	5 cut(s)	488, 560, 1106, 1139, 1204
BclI	TGATCA	3 cut(s)	163, 354, 898
BcoDI	GTCTC	1 cut(s)	1166
BfaI	CTAG	1 cut(s)	1208
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	4 cut(s)	221, 350, 873, 1088
BlsI	GCNGC	4 cut(s)	222, 351, 874, 1089
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	690
BmsI	GCATC	2 cut(s)	15, 859
BmuI	ACTGGG	1 cut(s)	690
BpmI	CTGGAG	1 cut(s)	1091
Bpu10I	CCTNAGC	2 cut(s)	72, 1091
BpuEI	CTTGAG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	3 cut(s)	58, 791, 1140
BsaXI	ACNNNNNCTCC	1 cut(s)	1307
Bse1I	ACTGG	2 cut(s)	106, 696
Bse3DI	GCAATG	1 cut(s)	1077
Bse8I	GATNNNNATC	1 cut(s)	645
BseDI	CCNNGG	3 cut(s)	58, 791, 1140
BseGI	GGATG	5 cut(s)	342, 868, 1117, 1150, 1196
BseJI	GATNNNNATC	1 cut(s)	645
BseMI	GCAATG	1 cut(s)	1077
BseMII	CTCAG	2 cut(s)	900, 1082
BseNI	ACTGG	2 cut(s)	106, 696
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	232, 361, 884, 1099
BseYI	CCCAGC	1 cut(s)	1083
BsgI	GTGCAG	2 cut(s)	239, 1061
BshFI	GGCC	5 cut(s)	57, 105, 156, 498, 929
BshNI	GGYRCC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	1166
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	5 cut(s)	57, 105, 156, 498, 929
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	5 cut(s)	163, 252, 354, 600, 898
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	5 cut(s)	57, 105, 156, 498, 929
BspCNI	CTCAG	2 cut(s)	901, 1083
BspLI	GGNNCC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	1077
BsrI	ACTGG	2 cut(s)	106, 696
BssECI	CCNNGG	3 cut(s)	58, 791, 1140
BssMI	GATC	5 cut(s)	163, 252, 354, 600, 898
BssT1I	CCWWGG	3 cut(s)	58, 791, 1140
Bst4CI	ACNGT	3 cut(s)	398, 1029, 1323
BstC8I	GCNNGC	2 cut(s)	629, 722
BstDEI	CTNAG	5 cut(s)	72, 483, 909, 1065, 1091
BstF5I	GGATG	5 cut(s)	342, 868, 1117, 1150, 1196
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	5 cut(s)	166, 255, 357, 603, 901
BstMAI	GTCTC	1 cut(s)	1166
BstMBI	GATC	5 cut(s)	163, 252, 354, 600, 898
BstMWI	GCNNNNNNNGC	2 cut(s)	533, 1093
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	4 cut(s)	232, 361, 884, 1099
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	5 cut(s)	57, 105, 156, 498, 929
BtsCI	GGATG	5 cut(s)	342, 868, 1117, 1150, 1196
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	2 cut(s)	364, 901
Cac8I	GCNNGC	2 cut(s)	629, 722
CaiI	CAGNNNCTG	2 cut(s)	352, 1090
CfoI	GCGC	1 cut(s)	720
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	5 cut(s)	83, 235, 328, 638, 1302
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	5 cut(s)	72, 483, 909, 1065, 1091
DpnI	GATC	5 cut(s)	165, 254, 356, 602, 900
DpnII	GATC	5 cut(s)	163, 252, 354, 600, 898
DriI	GACNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	103, 927
Eam1105I	GACNNNNNGTC	1 cut(s)	586
Eco130I	CCWWGG	3 cut(s)	58, 791, 1140
Eco32I	GATATC	3 cut(s)	183, 450, 958
Eco57I	CTGAAG	2 cut(s)	561, 1280
EcoRV	GATATC	3 cut(s)	183, 450, 958
EcoT14I	CCWWGG	3 cut(s)	58, 791, 1140
ErhI	CCWWGG	3 cut(s)	58, 791, 1140
FaeI	CATG	5 cut(s)	86, 238, 331, 641, 1305
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	5 cut(s)	82, 234, 327, 637, 1301
FbaI	TGATCA	3 cut(s)	163, 354, 898
Fnu4HI	GCNGC	4 cut(s)	221, 350, 873, 1088
FokI	GGATG	5 cut(s)	349, 875, 1124, 1157, 1183
Fsp4HI	GCNGC	4 cut(s)	221, 350, 873, 1088
FspBI	CTAG	1 cut(s)	1208
FspI	TGCGCA	1 cut(s)	719
GlaI	GCGC	1 cut(s)	719
GluI	GCNGC	4 cut(s)	221, 350, 873, 1088
GsaI	CCCAGC	1 cut(s)	1087
GsuI	CTGGAG	1 cut(s)	1091
HaeIII	GGCC	5 cut(s)	57, 105, 156, 498, 929
HapII	CCGG	1 cut(s)	410
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	5 cut(s)	86, 238, 331, 641, 1305
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	3 cut(s)	479, 735, 763
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	6 cut(s)	296, 386, 581, 610, 1244, 1322
Hpy166II	GTNNAC	3 cut(s)	1032, 1105, 1191
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	2 cut(s)	539, 732
Hpy8I	GTNNAC	3 cut(s)	1032, 1105, 1191
HpyAV	CCTTC	5 cut(s)	133, 306, 1147, 1210, 1255
HpyCH4III	ACNGT	3 cut(s)	398, 1029, 1323
HpyCH4IV	ACGT	1 cut(s)	777
HpyCH4V	TGCA	6 cut(s)	28, 86, 220, 505, 872, 1042
HpyF10VI	GCNNNNNNNGC	2 cut(s)	533, 1093
HpyF3I	CTNAG	5 cut(s)	72, 483, 909, 1065, 1091
HpySE526I	ACGT	1 cut(s)	777
Hsp92II	CATG	5 cut(s)	86, 238, 331, 641, 1305
HspAI	GCGC	1 cut(s)	718
Ksp22I	TGATCA	3 cut(s)	163, 354, 898
Kzo9I	GATC	5 cut(s)	163, 252, 354, 600, 898
LmnI	GCTCC	2 cut(s)	541, 818
Lsp1109I	GCAGC	4 cut(s)	232, 361, 884, 1099
LweI	GCATC	2 cut(s)	15, 859
MaeI	CTAG	1 cut(s)	1208
MaeII	ACGT	1 cut(s)	777
MaeIII	GTNAC	2 cut(s)	142, 887
MalI	GATC	5 cut(s)	165, 254, 356, 602, 900
MboI	GATC	5 cut(s)	163, 252, 354, 600, 898
MboII	GAAGA	2 cut(s)	1231, 1264
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	472
MlsI	TGGCCA	2 cut(s)	105, 929
MluCI	AATT	7 cut(s)	126, 883, 940, 1056, 1127, 1179, 1244
MluNI	TGGCCA	2 cut(s)	105, 929
Mox20I	TGGCCA	2 cut(s)	105, 929
MscI	TGGCCA	2 cut(s)	105, 929
MseI	TTAA	5 cut(s)	120, 129, 201, 443, 1248
MslI	CAYNNNNRTG	1 cut(s)	1037
Msp20I	TGGCCA	2 cut(s)	105, 929
MspA1I	CMGCKG	2 cut(s)	352, 1090
MspI	CCGG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	952
MwoI	GCNNNNNNNGC	2 cut(s)	533, 1093
NdeII	GATC	5 cut(s)	163, 252, 354, 600, 898
NlaIII	CATG	5 cut(s)	86, 238, 331, 641, 1305
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	887
NsbI	TGCGCA	1 cut(s)	719
OliI	CACNNNNGTG	1 cut(s)	1037
PctI	GAATGC	1 cut(s)	952
PfeI	GAWTC	3 cut(s)	479, 735, 763
PkrI	GCNGC	4 cut(s)	222, 351, 874, 1089
PspFI	CCCAGC	1 cut(s)	1083
PspN4I	GGNNCC	1 cut(s)	92
PstNI	CAGNNNCTG	2 cut(s)	352, 1090
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	2 cut(s)	352, 1090
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
RseI	CAYNNNNRTG	1 cut(s)	1037
SaqAI	TTAA	5 cut(s)	120, 129, 201, 443, 1248
SatI	GCNGC	4 cut(s)	221, 350, 873, 1088
Sau3AI	GATC	5 cut(s)	163, 252, 354, 600, 898
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	15, 859
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	7 cut(s)	126, 883, 940, 1056, 1127, 1179, 1244
SsiI	CCGC	1 cut(s)	516
SspMI	CTAG	1 cut(s)	1208
StyI	CCWWGG	3 cut(s)	58, 791, 1140
TaaI	ACNGT	3 cut(s)	398, 1029, 1323
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	1 cut(s)	843
TasI	AATT	7 cut(s)	126, 883, 940, 1056, 1127, 1179, 1244
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	3 cut(s)	479, 735, 763
Tru1I	TTAA	5 cut(s)	120, 129, 201, 443, 1248
Tru9I	TTAA	5 cut(s)	120, 129, 201, 443, 1248
TscAI	CASTG	2 cut(s)	364, 901
TseFI	GTSAC	1 cut(s)	887
TseI	GCWGC	4 cut(s)	220, 349, 872, 1087
Tsp45I	GTSAC	1 cut(s)	887
TspDTI	ATGAA	2 cut(s)	444, 1232
TspRI	CASTG	2 cut(s)	364, 901
XapI	RAATTY	2 cut(s)	1179, 1244
XspI	CTAG	1 cut(s)	1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.