Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

60805259 .. 60805657

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAATACGCGGAAGGCGGTGAGCTTTTTCACAAAATAGTAAAAGGAAAGCTGGAGGAGGAAGTCGCCAGGAACTACTTCCAACAGTTGATCATCACAGTTGACTTCTGCCACAGGAGAGATGAAAATGGAGTGTTGAAGGTATCGGATTTTGGGTTAAGTGCGCTTGCTGAATCGAAGAGGGAAGATGGTTTACTACCTAGAAGTTGTGGCACACCTTCTTATGTAGCTCCTGAAGTGTTGGGCAGGAAAGCCTATGATGGAGCCAAAGCCGATATATGGTCTTGTGGGGTGATCTTGTTTGCACTATTGGCCGGTCATGTTCCATTCCGTGATCCAAATATTACACTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

118

Amino Acids

13.07

Weight (kDa)

5.58

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 112	4.3e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 111	1.5e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	11, 18
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	25, 52, 230
AluI	AGCT	3 cut(s)	25, 52, 230
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	32, 304
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BauI	CACGAG	1 cut(s)	350
BccI	CCATC	2 cut(s)	182, 254
BciT130I	CCWGG	1 cut(s)	70
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	279
BsnI	GGCC	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	90, 294, 334
BspACI	CCGC	2 cut(s)	11, 18
BspANI	GGCC	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssMI	GATC	3 cut(s)	90, 294, 334
BssSI	CACGAG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	87, 100
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	93, 297, 337
BstMBI	GATC	3 cut(s)	90, 294, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstUI	CGCG	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	314
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	7 cut(s)	25, 52, 230, 254, 266, 272, 314
CviKI_1	RGCY	7 cut(s)	25, 52, 230, 254, 266, 272, 314
DpnI	GATC	3 cut(s)	92, 296, 336
DpnII	GATC	3 cut(s)	90, 294, 334
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	323
FaiI	YATR	5 cut(s)	225, 258, 278, 280, 321
FatI	CATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	90
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	315
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	32, 304
Hpy166II	GTNNAC	2 cut(s)	103, 194
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	2 cut(s)	103, 194
HpyAV	CCTTC	3 cut(s)	8, 133, 228
HpyCH4III	ACNGT	2 cut(s)	87, 100
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 294, 334
LmnI	GCTCC	2 cut(s)	235, 263
LpnPI	CCDG	7 cut(s)	38, 55, 82, 100, 232, 246, 328
MaeI	CTAG	1 cut(s)	201
MalI	GATC	3 cut(s)	92, 296, 336
MboI	GATC	3 cut(s)	90, 294, 334
MboII	GAAGA	2 cut(s)	190, 197
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	49, 52, 174
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	1 cut(s)	158
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	3 cut(s)	90, 294, 334
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	158
Sau3AI	GATC	3 cut(s)	90, 294, 334
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	6 cut(s)	27, 54, 144, 202, 220, 232
SsiI	CCGC	2 cut(s)	11, 18
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	87, 100
TaqI	TCGA	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.