Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

55265477 .. 55272200

Gene Structure 6724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTTACAATTGCTTTAAAAGGGTCCGCTTCCTGCCCACTACTTCAAACTCTTCTGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCTGCTGTGTCTCCACTTGGGGTCGTCGCAGCAATTGGAAGACCCTACAAGACTATCGGACCTTGACATTATCATATCTAGAGTTCTGTTGGAAGTACCGATGATCAAGTACTATTGTCTCTTTCACATGATCAACCATGTAATAGCATTCAGCTCACACATCTCCTTGTTCATCAATTGTTCCATCATCAAGCGCAAGATGGTCGACCGGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGGACCAAGATTTATATAATATTGGAGTTCATTACGGGTGGTGAATTGTTTGATAAAATCGTTCATCATGGACGTCTTAGCGAAAGTGAAGCCGGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAAAGCCGGAAAATCTTTTGCTTCATTCTCTTGGAAATTTAAGAATTTCAGATTTCGGTGCGAGTGCATTGCACGAACAAGGAGTCAGCCTCCTTTGCACAACTTATGGGACCCCTAACTATGTTGCACACGAGGTCCTCGGTCACAAGGGTTATGATGATGCCGTTCAAGGAAACAAAAGTCACCAGGCCACCAACAAAGAGAATCCCTTTTTCTTCCACTATCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

256

Amino Acids

29.14

Weight (kDa)

8.19

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	94 - 235	7.6e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	97 - 229	1.6e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	574, 582
AcyI	GRCGYC	1 cut(s)	448
AfaI	GTAC	2 cut(s)	186, 200
AfiI	CCNNNNNNNGG	1 cut(s)	517
AgsI	TTSAA	3 cut(s)	47, 79, 707
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	3 cut(s)	243, 328, 487
AluI	AGCT	3 cut(s)	243, 328, 487
Alw26I	GTCTC	2 cut(s)	104, 212
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	726
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	2 cut(s)	574, 582
ArsI	GACNNNNNNTTYG	2 cut(s)	606, 638
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	5 cut(s)	24, 148, 378, 648, 673
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	428, 713
AvaII	GGWCC	5 cut(s)	24, 148, 378, 648, 673
BauI	CACGAG	2 cut(s)	359, 668
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	281, 283, 488
BceAI	ACGGC	1 cut(s)	686
BcgI	CGANNNNNNTGC	4 cut(s)	274, 308, 589, 623
BciT130I	CCWGG	1 cut(s)	725
BclI	TGATCA	2 cut(s)	192, 219
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	104, 212
BfaI	CTAG	2 cut(s)	168, 368
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	469, 725
Bme18I	GGWCC	5 cut(s)	24, 148, 378, 648, 673
BmgT120I	GGNCC	5 cut(s)	24, 148, 378, 648, 673
BmiI	GGNNCC	3 cut(s)	25, 649, 650
BmrFI	CCNGG	2 cut(s)	469, 725
BmsI	GCATC	2 cut(s)	346, 688
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	612, 644
BpuMI	CCSGG	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	676
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	725
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMI	GCAATG	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	728
BsiEI	CGRYCG	1 cut(s)	298
BsiSI	CCGG	3 cut(s)	298, 468, 545
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	2 cut(s)	104, 212
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	728
Bsp143I	GATC	3 cut(s)	192, 219, 300
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	728
BspLI	GGNNCC	3 cut(s)	25, 649, 650
BspPI	GGATC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	605
BssECI	CCNNGG	1 cut(s)	676
BssMI	GATC	3 cut(s)	192, 219, 300
BssNI	GRCGYC	1 cut(s)	448
BssSI	CACGAG	2 cut(s)	359, 668
Bst2BI	CACGAG	2 cut(s)	359, 668
Bst2UI	CCWGG	1 cut(s)	725
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	3 cut(s)	195, 222, 303
BstMAI	GTCTC	2 cut(s)	104, 212
BstMBI	GATC	3 cut(s)	192, 219, 300
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 633
BstNI	CCWGG	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	467, 723
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	728
BtsCI	GGATG	1 cut(s)	337
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	5 cut(s)	24, 148, 378, 648, 673
Csp6I	GTAC	2 cut(s)	185, 199
CviAII	CATG	3 cut(s)	217, 227, 443
CviJI	RGCY	7 cut(s)	243, 328, 467, 487, 544, 627, 728
CviKI_1	RGCY	7 cut(s)	243, 328, 467, 487, 544, 627, 728
CviQI	GTAC	2 cut(s)	185, 199
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	3 cut(s)	194, 221, 302
DpnII	GATC	3 cut(s)	192, 219, 300
DraI	TTTAAA	2 cut(s)	18, 540
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	5 cut(s)	24, 148, 378, 648, 673
EcoO109I	RGGNCCY	2 cut(s)	648, 673
EcoRII	CCWGG	1 cut(s)	723
EcoRV	GATATC	1 cut(s)	315
FaeI	CATG	3 cut(s)	220, 230, 446
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	3 cut(s)	216, 226, 442
FbaI	TGATCA	2 cut(s)	192, 219
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	168, 368
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	728
HapII	CCGG	3 cut(s)	298, 468, 545
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	448
Hin1II	CATG	3 cut(s)	220, 230, 446
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	4 cut(s)	373, 474, 621, 742
HpaII	CCGG	3 cut(s)	298, 468, 545
HphI	GGTGA	2 cut(s)	428, 713
Hpy166II	GTNNAC	2 cut(s)	6, 295
Hpy188I	TCNGA	3 cut(s)	148, 378, 589
Hpy188III	TCNNGA	3 cut(s)	168, 304, 764
Hpy8I	GTNNAC	2 cut(s)	6, 295
Hpy99I	CGWCG	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	5 cut(s)	358, 605, 610, 636, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 633
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	1 cut(s)	448
Hsp92I	GRCGYC	1 cut(s)	448
Hsp92II	CATG	3 cut(s)	220, 230, 446
HspAI	GCGC	1 cut(s)	283
KflI	GGGWCCC	1 cut(s)	648
Ksp22I	TGATCA	2 cut(s)	192, 219
Kzo9I	GATC	3 cut(s)	192, 219, 300
LpnPI	CCDG	6 cut(s)	46, 311, 481, 558, 710, 737
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	2 cut(s)	346, 688
MaeI	CTAG	2 cut(s)	168, 368
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	680, 719
MalI	GATC	3 cut(s)	194, 221, 302
MboI	GATC	3 cut(s)	192, 219, 300
MboII	GAAGA	4 cut(s)	44, 140, 469, 745
MfeI	CAATTG	3 cut(s)	9, 122, 265
MluCI	AATT	6 cut(s)	9, 122, 265, 419, 574, 582
MlyI	GAGTC	2 cut(s)	382, 630
MmeI	TCCRAC	3 cut(s)	159, 356, 505
MnlI	CCTC	7 cut(s)	81, 300, 327, 355, 638, 664, 686
MseI	TTAA	3 cut(s)	17, 539, 578
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	3 cut(s)	298, 468, 545
MspR9I	CCNGG	2 cut(s)	469, 725
MunI	CAATTG	3 cut(s)	9, 122, 265
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	725
MwoI	GCNNNNNNNGC	2 cut(s)	334, 633
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	192, 219, 300
NlaIII	CATG	3 cut(s)	220, 230, 446
NlaIV	GGNNCC	3 cut(s)	25, 649, 650
NmuCI	GTSAC	2 cut(s)	680, 719
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	474, 742
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	381, 629
PpsI	GAGTC	2 cut(s)	381, 629
PpuMI	RGGWCCY	2 cut(s)	648, 673
Psp5II	RGGWCCY	2 cut(s)	648, 673
Psp6I	CCWGG	1 cut(s)	723
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	3 cut(s)	25, 649, 650
PspPI	GGNCC	5 cut(s)	24, 148, 378, 648, 673
PspPPI	RGGWCCY	2 cut(s)	648, 673
RsaI	GTAC	2 cut(s)	186, 200
RsaNI	GTAC	2 cut(s)	185, 199
RseI	CAYNNNNRTG	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	17, 539, 578
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	3 cut(s)	192, 219, 300
Sau96I	GGNCC	5 cut(s)	24, 148, 378, 648, 673
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	2 cut(s)	382, 630
ScrFI	CCNGG	2 cut(s)	469, 725
SetI	ASST	8 cut(s)	73, 153, 245, 330, 366, 451, 489, 675
SfaNI	GCATC	2 cut(s)	346, 688
SinI	GGWCC	5 cut(s)	24, 148, 378, 648, 673
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	6 cut(s)	9, 122, 265, 419, 574, 582
SsiI	CCGC	1 cut(s)	27
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	2 cut(s)	168, 368
StyD4I	CCNGG	2 cut(s)	467, 723
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	668
TasI	AATT	6 cut(s)	9, 122, 265, 419, 574, 582
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	474, 742
Tru1I	TTAA	3 cut(s)	17, 539, 578
Tru9I	TTAA	3 cut(s)	17, 539, 578
TseFI	GTSAC	2 cut(s)	680, 719
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	680, 719
TspDTI	ATGAA	5 cut(s)	250, 338, 394, 428, 551
VpaK11BI	GGWCC	5 cut(s)	24, 148, 378, 648, 673
XapI	RAATTY	2 cut(s)	574, 582
XbaI	TCTAGA	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	2 cut(s)	168, 368
ZraI	GACGTC	1 cut(s)	449
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.