Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002002.1

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

95428 .. 97894

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002002.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgtgcttcgattcccagcgtctggaacttctgatgctatcttggcgtggcgcgtggcggcacgtcagcggtgatatgagggcgatccagggctcgggcggtagcccgcctagccgtgccttcgcaggtcactccattggtgggagtcagtacctctggcgtctcagcattgccaacaaactccatccgttcgtcgacaagactagaaatcacccctgcagctgccgcatgacaccactagtagccatagcagcaaacccgcgccgccgctgttggaaatcaatgtcttccggccctccaaatctcaccgtcactgtgaaaatgccaggacgcaatgcagttgccgtaaacgaaaacccaaaagcatcagagcttctgacttgcgccattaagatcatcaacaaagagaagatcctcaagtgtagtttgatcgcccacatcaaacgcgagatctccatcttccgccgcattcaccaccccaatatcatccagctcttcgaagtaatcgccaccaatgccaagatctacttcgtcatggagtacacccgcggcggcgagctcttcaacaaggtcaccaagggccagctcaaagaggagattgctagaaagtacttccagcaattaatctcagccgtcagattctgccatgcccgagggtgtatctgcaatttccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

225

Amino Acids

25.49

Weight (kDa)

10.25

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	4 cut(s)	53, 262, 447, 549
AclWI	GGATC	2 cut(s)	79, 406
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	3 cut(s)	152, 542, 611
AfiI	CCNNNNNNNGG	3 cut(s)	22, 94, 141
AgsI	TTSAA	1 cut(s)	565
AhlI	ACTAGT	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	87, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	5 cut(s)	222, 373, 493, 559, 586
AluI	AGCT	5 cut(s)	222, 373, 493, 559, 586
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	79, 406
AlwNI	CAGNNNCTG	2 cut(s)	22, 642
Ama87I	CYCGRG	2 cut(s)	94, 651
AoxI	GGCC	2 cut(s)	292, 580
ApeKI	GCWGC	3 cut(s)	219, 222, 251
AseI	ATTAAT	1 cut(s)	623
AspLEI	GCGC	3 cut(s)	53, 264, 386
AspS9I	GGNCC	2 cut(s)	293, 580
AsuHPI	GGTGA	5 cut(s)	83, 203, 298, 464, 565
AsuII	TTCGAA	1 cut(s)	498
AvaI	CYCGRG	2 cut(s)	94, 651
BanII	GRGCYC	2 cut(s)	95, 561
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	209, 231, 263
BccI	CCATC	2 cut(s)	192, 464
BceAI	ACGGC	3 cut(s)	99, 329, 617
BciT130I	CCWGG	2 cut(s)	89, 327
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	4 cut(s)	111, 204, 239, 603
BfmI	CTRYAG	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	116
BglII	AGATCT	2 cut(s)	450, 522
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	2 cut(s)	89, 327
BmeT110I	CYCGRG	2 cut(s)	94, 651
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	293, 580
BmrFI	CCNGG	2 cut(s)	89, 327
BmsI	GCATC	2 cut(s)	24, 374
BpiI	GAAGAC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	4 cut(s)	88, 547, 576, 652
BsaWI	WCCGGW	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 94, 141
Bse3DI	GCAATG	2 cut(s)	168, 340
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	89, 327
BseDI	CCNNGG	4 cut(s)	88, 547, 576, 652
BseGI	GGATG	2 cut(s)	184, 486
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	3 cut(s)	22, 94, 141
BseMI	GCAATG	2 cut(s)	168, 340
BseMII	CTCAG	2 cut(s)	178, 642
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	3 cut(s)	209, 231, 263
BseYI	CCCAGC	1 cut(s)	15
Bsh1236I	CGCG	4 cut(s)	53, 262, 447, 549
BshFI	GGCC	2 cut(s)	294, 582
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	2 cut(s)	94, 651
BsiSI	CCGG	2 cut(s)	291, 673
BslI	CCNNNNNNNGG	3 cut(s)	22, 94, 141
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	294, 582
BsoBI	CYCGRG	2 cut(s)	94, 651
Bsp119I	TTCGAA	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	95, 561
Bsp143I	GATC	6 cut(s)	84, 393, 411, 429, 450, 522
BspANI	GGCC	2 cut(s)	294, 582
BspCNI	CTCAG	2 cut(s)	177, 641
BspFNI	CGCG	4 cut(s)	53, 262, 447, 549
BspMAI	CTGCAG	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	79, 406
BspQI	GCTCTTC	2 cut(s)	500, 566
BspT104I	TTCGAA	1 cut(s)	498
BsrDI	GCAATG	2 cut(s)	168, 340
BssECI	CCNNGG	4 cut(s)	88, 547, 576, 652
BssMI	GATC	6 cut(s)	84, 393, 411, 429, 450, 522
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	2 cut(s)	89, 327
Bst4CI	ACNGT	2 cut(s)	310, 316
Bst6I	CTCTTC	2 cut(s)	500, 566
BstACI	GRCGYC	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	107, 557, 584
BstDEI	CTNAG	2 cut(s)	164, 628
BstDSI	CCRYGG	1 cut(s)	547
BstEII	GGTNACC	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	184, 486
BstFNI	CGCG	4 cut(s)	53, 262, 447, 549
BstHHI	GCGC	3 cut(s)	53, 264, 386
BstKTI	GATC	6 cut(s)	87, 396, 414, 432, 453, 525
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	6 cut(s)	84, 393, 411, 429, 450, 522
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 111, 225, 251, 515
BstNI	CCWGG	2 cut(s)	89, 327
BstPI	GGTNACC	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	87, 325
BstSFI	CTRYAG	1 cut(s)	217
BstUI	CGCG	4 cut(s)	53, 262, 447, 549
BstV1I	GCAGC	3 cut(s)	209, 231, 263
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	3 cut(s)	411, 450, 522
BstYI	RGATCY	3 cut(s)	411, 450, 522
BsuRI	GGCC	2 cut(s)	294, 582
BtgI	CCRYGG	1 cut(s)	547
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	184, 486
BtsIMutI	CAGTG	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	3 cut(s)	107, 557, 584
CaiI	CAGNNNCTG	2 cut(s)	22, 642
CfoI	GCGC	3 cut(s)	53, 264, 386
Cfr13I	GGNCC	2 cut(s)	293, 580
Cfr42I	CCGCGG	1 cut(s)	550
CseI	GACGC	3 cut(s)	8, 149, 339
Csp6I	GTAC	3 cut(s)	151, 541, 610
CviAII	CATG	3 cut(s)	229, 535, 647
CviQI	GTAC	3 cut(s)	151, 541, 610
DdeI	CTNAG	2 cut(s)	164, 628
DpnI	GATC	6 cut(s)	86, 395, 413, 431, 452, 524
DpnII	GATC	6 cut(s)	84, 393, 411, 429, 450, 522
Eam1104I	CTCTTC	2 cut(s)	500, 566
EarI	CTCTTC	2 cut(s)	500, 566
EciI	GGCGGA	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	2 cut(s)	95, 561
Eco53kI	GAGCTC	1 cut(s)	559
Eco88I	CYCGRG	2 cut(s)	94, 651
Eco91I	GGTNACC	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	559
EcoO65I	GGTNACC	1 cut(s)	571
EcoRII	CCWGG	2 cut(s)	87, 325
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	2 cut(s)	95, 561
ErhI	CCWWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	3 cut(s)	232, 538, 650
FaiI	YATR	5 cut(s)	77, 230, 248, 536, 648
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FatI	CATG	3 cut(s)	228, 534, 646
FauI	CCCGC	3 cut(s)	114, 267, 554
FblI	GTMKAC	1 cut(s)	195
FokI	GGATG	2 cut(s)	171, 473
FriOI	GRGCYC	2 cut(s)	95, 561
FspBI	CTAG	4 cut(s)	111, 204, 239, 603
GlaI	GCGC	3 cut(s)	52, 263, 385
GsaI	CCCAGC	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	294, 582
HapII	CCGG	2 cut(s)	291, 673
HgaI	GACGC	3 cut(s)	8, 149, 339
HhaI	GCGC	3 cut(s)	53, 264, 386
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	232, 538, 650
Hin6I	GCGC	3 cut(s)	51, 262, 384
HinP1I	GCGC	3 cut(s)	51, 262, 384
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	11, 145, 639
HpaII	CCGG	2 cut(s)	291, 673
HphI	GGTGA	5 cut(s)	83, 203, 298, 464, 565
Hpy166II	GTNNAC	3 cut(s)	196, 349, 543
Hpy188I	TCNGA	4 cut(s)	33, 370, 378, 638
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	3 cut(s)	196, 349, 543
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	310, 316
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	219, 338, 666
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 111, 225, 251, 515
HpyF3I	CTNAG	2 cut(s)	164, 628
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	232, 538, 650
HspAI	GCGC	3 cut(s)	51, 262, 384
KspI	CCGCGG	1 cut(s)	550
Kzo9I	GATC	6 cut(s)	84, 393, 411, 429, 450, 522
LguI	GCTCTTC	2 cut(s)	500, 566
Lsp1109I	GCAGC	3 cut(s)	209, 231, 263
LweI	GCATC	2 cut(s)	24, 374
MaeI	CTAG	4 cut(s)	111, 204, 239, 603
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	128, 310, 571
MalI	GATC	6 cut(s)	86, 395, 413, 431, 452, 524
MboI	GATC	6 cut(s)	84, 393, 411, 429, 450, 522
MboII	GAAGA	5 cut(s)	279, 421, 451, 487, 553
MflI	RGATCY	3 cut(s)	411, 450, 522
MhlI	GDGCHC	2 cut(s)	95, 561
MluCI	AATT	2 cut(s)	620, 667
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	6 cut(s)	72, 164, 306, 425, 586, 647
MseI	TTAA	2 cut(s)	390, 623
MspA1I	CMGCKG	4 cut(s)	69, 222, 270, 549
MspI	CCGG	2 cut(s)	291, 673
MspR9I	CCNGG	2 cut(s)	89, 327
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	89, 327
MvnI	CGCG	4 cut(s)	53, 262, 447, 549
MwoI	GCNNNNNNNGC	5 cut(s)	43, 111, 225, 251, 515
NdeII	GATC	6 cut(s)	84, 393, 411, 429, 450, 522
NlaIII	CATG	3 cut(s)	232, 538, 650
NmuCI	GTSAC	3 cut(s)	128, 310, 571
NspV	TTCGAA	1 cut(s)	498
PciSI	GCTCTTC	2 cut(s)	500, 566
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	11, 639
PflMI	CCANNNNNTGG	1 cut(s)	22
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	623
Psp124BI	GAGCTC	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	87, 325
PspEI	GGTNACC	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	87, 325
PspPI	GGNCC	2 cut(s)	293, 580
PstI	CTGCAG	1 cut(s)	221
PstNI	CAGNNNCTG	2 cut(s)	22, 642
PsuI	RGATCY	3 cut(s)	411, 450, 522
PvuII	CAGCTG	1 cut(s)	222
RsaI	GTAC	3 cut(s)	152, 542, 611
RsaNI	GTAC	3 cut(s)	151, 541, 610
SacI	GAGCTC	1 cut(s)	561
SacII	CCGCGG	1 cut(s)	550
SalI	GTCGAC	1 cut(s)	194
SapI	GCTCTTC	2 cut(s)	500, 566
SaqAI	TTAA	2 cut(s)	390, 623
Sau3AI	GATC	6 cut(s)	84, 393, 411, 429, 450, 522
Sau96I	GGNCC	2 cut(s)	293, 580
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	89, 327
SduI	GDGCHC	2 cut(s)	95, 561
SetI	ASST	9 cut(s)	66, 130, 156, 224, 375, 495, 561, 573, 588
SfaNI	GCATC	2 cut(s)	24, 374
SfcI	CTRYAG	1 cut(s)	217
Sfr303I	CCGCGG	1 cut(s)	550
SfuI	TTCGAA	1 cut(s)	498
SgrBI	CCGCGG	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	2 cut(s)	620, 667
SspMI	CTAG	4 cut(s)	111, 204, 239, 603
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	87, 325
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	310, 316
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	9, 195, 498
TasI	AATT	2 cut(s)	620, 667
TatI	WGTACW	2 cut(s)	540, 609
TauI	GCSGC	7 cut(s)	61, 228, 267, 270, 468, 552, 555
TfiI	GAWTC	2 cut(s)	11, 639
Tru1I	TTAA	2 cut(s)	390, 623
Tru9I	TTAA	2 cut(s)	390, 623
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	3 cut(s)	128, 310, 571
TseI	GCWGC	3 cut(s)	219, 222, 251
Tsp45I	GTSAC	3 cut(s)	128, 310, 571
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	22
VspI	ATTAAT	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	4 cut(s)	111, 204, 239, 603
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.