Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

7128119 .. 7132504

Gene Structure 4386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026942

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGACAAGAAGTCGAAGGTGTTGATGCAGAAGTTCAAAGTTAAGAAACTTTTAGGGCAAGGTAACTTTGCAAAGGTCTATAGCGCAACGAACCTTGAAACCAATCAGAGTGTAGCCATCAAGGTAATCAGCAAAGACATGGTTGTCAAAACTGGACTGATTGATCAGACCAAAAGAGAGATTACTGCTATGAGATTGCTTAAACACCCAAACATAGTGCAGCTATATGAAGTCATTGCCTCCAAAGCCAAGATCTACCTCATCATGGAATACGCAAAAGGTGGTGAGCTTTTTCAAAAGATAAAGAAAGGAAGGCTCATGGAGGAAGTTGCATGGAATTACTTCCAACAGCTCATCACTGCTGTTGATTTCTGCCACAAAAGAGGTGTTTACCACCGCGATTTGAAGCCCGAGAACTTGCTGCTAGATGAAAATGGAGTGTTGAAGGTATCGGATTTTGGTTTGAGTGCACTTGCTGAGTCGAAGAGGGAAGATGGTTTACTACATACAAATTGTGGCACTCCTTCTTATGTGGCTCCTGAAGTTATCCGCTGTAGAGCCTATGATGGAGCTAAAGCTGATATATGGTCTTGTGGGGTGATCTTGTTTGCACTATTGGCTGCGAGAACCAAGAGATTATTACACCCACCACTTGTGACTGCTTTCGATTTCATATCTCTTGCAAGTGGACTTGATTTATCTGGCTTGATGATGCAAAAGGATTCAAAGAAAGCAGTGCTCTTCACATCAGCGCAATCTGCCACATCCATCATGTCGAAGCTGAGGGAGATCACTCGGAAACTGAAGCTGAAAGTGAAGAAAGAAGGAGCATCACTGAAGTTGGTGAAATCTATGGATGGAAGGACATTATCCATAGAAGCCGAAATTTTTGAGTTCACTCCATCCTTTCATCTAGTGGAGATGAAGAAATCTAACGGAGATACATTCGAGTTTAGGAAGATGGTAGAAGAGGATATAAGGCCGGCTCTCAAAGACGTCGTATATATGGGCATGGCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

341

Amino Acids

38.2

Weight (kDa)

9.55

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 209	3.1e-65	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 206	2.1e-36	Protein tyrosine and serine/threonine kinase
NAF	PF03822	218 - 274	2.4e-15	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	999
AccII	CGCG	1 cut(s)	399
AciI	CCGC	2 cut(s)	397, 550
AcsI	RAATTY	1 cut(s)	885
AcuI	CTGAAG	3 cut(s)	561, 824, 857
AcyI	GRCGYC	1 cut(s)	996
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	6 cut(s)	37, 98, 296, 406, 445, 726
AhdI	GACNNNNNGTC	1 cut(s)	10
AluBI	AGCT	7 cut(s)	223, 289, 352, 572, 578, 781, 808
AluI	AGCT	7 cut(s)	223, 289, 352, 572, 578, 781, 808
Alw21I	GWGCWC	2 cut(s)	472, 741
Alw44I	GTGCAC	1 cut(s)	468
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	1 cut(s)	980
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	220, 421, 620
ApoI	RAATTY	1 cut(s)	885
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	86, 754
AsuHPI	GGTGA	3 cut(s)	296, 610, 856
AvaI	CYCGRG	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
Bbv12I	GWGCWC	2 cut(s)	472, 741
BbvCI	CCTCAGC	1 cut(s)	782
BbvI	GCAGC	3 cut(s)	232, 408, 607
BccI	CCATC	7 cut(s)	125, 488, 560, 776, 851, 910, 955
BclI	TGATCA	1 cut(s)	163
BfaI	CTAG	2 cut(s)	425, 914
BfmI	CTRYAG	2 cut(s)	79, 553
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	3 cut(s)	221, 422, 621
BlsI	GCNGC	3 cut(s)	222, 423, 622
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	537
BmsI	GCATC	3 cut(s)	15, 702, 839
Bpu10I	CCTNAGC	1 cut(s)	782
BsaHI	GRCGYC	1 cut(s)	996
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	1 cut(s)	982
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	234
BseGI	GGATG	3 cut(s)	764, 862, 902
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	468, 773
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	232, 408, 607
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	982
BsiHKAI	GWGCWC	2 cut(s)	472, 741
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	983
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	982
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	472, 741
Bsp143I	GATC	4 cut(s)	163, 252, 600, 789
BspACI	CCGC	2 cut(s)	397, 550
BspANI	GGCC	1 cut(s)	982
BspCNI	CTCAG	2 cut(s)	469, 774
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	537
BspQI	GCTCTTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	982
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	982
BssMI	GATC	4 cut(s)	163, 252, 600, 789
BssNI	GRCGYC	1 cut(s)	996
Bst6I	CTCTTC	3 cut(s)	479, 746, 963
BstACI	GRCGYC	1 cut(s)	996
BstC8I	GCNNGC	1 cut(s)	984
BstDEI	CTNAG	2 cut(s)	477, 782
BstF5I	GGATG	3 cut(s)	764, 862, 902
BstFNI	CGCG	1 cut(s)	399
BstHHI	GCGC	2 cut(s)	86, 754
BstKTI	GATC	4 cut(s)	166, 255, 603, 792
BstMBI	GATC	4 cut(s)	163, 252, 600, 789
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 617, 758
BstSFI	CTRYAG	2 cut(s)	79, 553
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	232, 408, 607
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	982
BtsCI	GGATG	3 cut(s)	764, 862, 902
BtsI	GCAGTG	2 cut(s)	357, 741
BtsIMutI	CAGTG	3 cut(s)	357, 741, 833
Cac8I	GCNNGC	1 cut(s)	984
CfoI	GCGC	2 cut(s)	86, 754
Cfr10I	RCCGGY	1 cut(s)	982
CviAII	CATG	6 cut(s)	139, 265, 319, 333, 772, 1012
DdeI	CTNAG	2 cut(s)	477, 782
DpnI	GATC	4 cut(s)	165, 254, 602, 791
DpnII	GATC	4 cut(s)	163, 252, 600, 789
DrdI	GACNNNNNNGTC	1 cut(s)	143
DriI	GACNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	3 cut(s)	479, 746, 963
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	3 cut(s)	479, 746, 963
Eco57I	CTGAAG	3 cut(s)	561, 824, 857
Eco88I	CYCGRG	1 cut(s)	410
FaeI	CATG	6 cut(s)	142, 268, 322, 336, 775, 1015
FatI	CATG	6 cut(s)	138, 264, 318, 332, 771, 1011
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	221, 422, 621
FokI	GGATG	3 cut(s)	751, 869, 889
Fsp4HI	GCNGC	3 cut(s)	221, 422, 621
FspBI	CTAG	2 cut(s)	425, 914
GlaI	GCGC	2 cut(s)	85, 753
GluI	GCNGC	3 cut(s)	221, 422, 621
HaeIII	GGCC	1 cut(s)	982
HapII	CCGG	1 cut(s)	983
HhaI	GCGC	2 cut(s)	86, 754
Hin1I	GRCGYC	1 cut(s)	996
Hin1II	CATG	6 cut(s)	142, 268, 322, 336, 775, 1015
Hin6I	GCGC	2 cut(s)	84, 752
HinP1I	GCGC	2 cut(s)	84, 752
HinfI	GANTC	2 cut(s)	479, 722
HpaII	CCGG	1 cut(s)	983
HphI	GGTGA	3 cut(s)	296, 610, 856
Hpy166II	GTNNAC	5 cut(s)	391, 470, 500, 689, 897
Hpy188I	TCNGA	4 cut(s)	108, 168, 454, 798
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	5 cut(s)	391, 470, 500, 689, 897
Hpy99I	CGWCG	1 cut(s)	1001
HpyAV	CCTTC	6 cut(s)	10, 306, 439, 534, 818, 855
HpyCH4IV	ACGT	1 cut(s)	996
HpyCH4V	TGCA	8 cut(s)	28, 71, 220, 332, 470, 611, 683, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 617, 758
HpyF3I	CTNAG	2 cut(s)	477, 782
HpySE526I	ACGT	1 cut(s)	996
Hsp92I	GRCGYC	1 cut(s)	996
Hsp92II	CATG	6 cut(s)	142, 268, 322, 336, 775, 1015
HspAI	GCGC	2 cut(s)	84, 752
KroI	GCCGGC	1 cut(s)	982
KroNI	GCCGGC	1 cut(s)	984
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	163, 252, 600, 789
LguI	GCTCTTC	1 cut(s)	746
LmnI	GCTCC	3 cut(s)	541, 569, 827
LpnPI	CCDG	5 cut(s)	138, 552, 687, 996, 1002
Lsp1109I	GCAGC	3 cut(s)	232, 408, 607
LweI	GCATC	3 cut(s)	15, 702, 839
MaeI	CTAG	2 cut(s)	425, 914
MaeII	ACGT	1 cut(s)	996
MaeIII	GTNAC	2 cut(s)	62, 655
MalI	GATC	4 cut(s)	165, 254, 602, 791
MboI	GATC	4 cut(s)	163, 252, 600, 789
MboII	GAAGA	7 cut(s)	496, 503, 733, 829, 937, 970, 980
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	2 cut(s)	472, 741
MluCI	AATT	3 cut(s)	337, 511, 885
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	7 cut(s)	250, 269, 316, 377, 480, 777, 964
MroNI	GCCGGC	1 cut(s)	982
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	2 cut(s)	42, 201
MspA1I	CMGCKG	1 cut(s)	552
MspI	CCGG	1 cut(s)	983
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	3 cut(s)	245, 617, 758
NaeI	GCCGGC	1 cut(s)	984
NdeII	GATC	4 cut(s)	163, 252, 600, 789
NgoMIV	GCCGGC	1 cut(s)	982
NlaIII	CATG	6 cut(s)	142, 268, 322, 336, 775, 1015
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	746
PdiI	GCCGGC	1 cut(s)	984
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	722
PkrI	GCNGC	3 cut(s)	222, 423, 622
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	746
SaqAI	TTAA	2 cut(s)	42, 201
SatI	GCNGC	3 cut(s)	221, 422, 621
Sau3AI	GATC	4 cut(s)	163, 252, 600, 789
SchI	GAGTC	1 cut(s)	488
SduI	GDGCHC	2 cut(s)	472, 741
SfaNI	GCATC	3 cut(s)	15, 702, 839
SfcI	CTRYAG	2 cut(s)	79, 553
Sse9I	AATT	3 cut(s)	337, 511, 885
SsiI	CCGC	2 cut(s)	397, 550
SspMI	CTAG	2 cut(s)	425, 914
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	5 cut(s)	14, 482, 666, 776, 948
TasI	AATT	3 cut(s)	337, 511, 885
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	2 cut(s)	42, 201
Tru9I	TTAA	2 cut(s)	42, 201
TscAI	CASTG	3 cut(s)	364, 741, 840
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	3 cut(s)	220, 421, 620
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	5 cut(s)	243, 444, 661, 899, 938
TspGWI	ACGGA	1 cut(s)	951
TspRI	CASTG	3 cut(s)	364, 741, 840
VneI	GTGCAC	1 cut(s)	468
XapI	RAATTY	1 cut(s)	885
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	2 cut(s)	425, 914
ZraI	GACGTC	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.