Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

32342156 .. 32344760

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018596

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATCATCCCCTCAATTTAATTCTGCCTCTGTACTCTGTAGACAGCCTTGAACTTAAGCCTTCTGCATCTGATTCCACCACAACCTCATCTAACCTCTATCTTATCATAATTGCCCTTATCTCGGCCTCCACCATTGCACTCGAGCGGCATAACAAGCAGCCACTACAATTTACAAACCTAGAAGCATCAGGGCTTCCGACCTGCGCCATTAAGATCATCGACAAAGAGAAGATCCTCAAGGGCGGTTTCATAGCCCACATCAAACGCGAGATCTCCATCTTCCGCCTCGTCCGCCACCCCAATATTGTCCAGCTCTTCGAAGTAATCGCCACCAAGGCCAAGATCTGCTTCGTCATGGAGTACGTCCGCGGCGGCGAGCTCTTCAACAAGGTCGCCCAGGGCCAGCTTAAAGAGGAGGTTGCTAGAAAGTACTTCCAGCAATTAATCTCAGCCGTCAGATTCTACCATGCCCGAGGAGTCTACCACCGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

166

Amino Acids

18.69

Weight (kDa)

9.52

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	68 - 165	3.3e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	68 - 165	8.1e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	148
AccI	GTMKAC	2 cut(s)	42, 483
AccII	CGCG	3 cut(s)	270, 372, 492
AciI	CCGC	8 cut(s)	148, 246, 286, 295, 370, 372, 375, 490
AclWI	GGATC	1 cut(s)	229
AfaI	GTAC	3 cut(s)	35, 365, 434
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	53, 388
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	3 cut(s)	316, 382, 409
AluI	AGCT	3 cut(s)	316, 382, 409
Alw21I	GWGCWC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	229
Ama87I	CYCGRG	2 cut(s)	143, 474
AoxI	GGCC	3 cut(s)	126, 339, 403
ApeKI	GCWGC	1 cut(s)	160
AseI	ATTAAT	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	403
AsuII	TTCGAA	1 cut(s)	321
AvaI	CYCGRG	2 cut(s)	143, 474
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	401
BfaI	CTAG	2 cut(s)	182, 426
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	212
BglI	GCCNNNNNGGC	1 cut(s)	338
BglII	AGATCT	2 cut(s)	273, 345
BisI	GCNGC	4 cut(s)	149, 161, 373, 376
BlsI	GCNGC	4 cut(s)	150, 162, 374, 377
BmcAI	AGTACT	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	401
BmeT110I	CYCGRG	2 cut(s)	143, 474
BmgT120I	GGNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	2 cut(s)	77, 197
Bpu14I	TTCGAA	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	5 cut(s)	336, 370, 399, 400, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	5 cut(s)	336, 370, 399, 400, 475
BseGI	GGATG	1 cut(s)	7
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	465
BseRI	GAGGAG	2 cut(s)	431, 492
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	3 cut(s)	270, 372, 492
BshFI	GGCC	3 cut(s)	128, 341, 405
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	2 cut(s)	143, 474
BslI	CCNNNNNNNGG	1 cut(s)	124
BsnI	GGCC	3 cut(s)	128, 341, 405
BsoBI	CYCGRG	2 cut(s)	143, 474
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	216, 234, 273, 345
BspACI	CCGC	8 cut(s)	148, 246, 286, 295, 370, 372, 375, 490
BspANI	GGCC	3 cut(s)	128, 341, 405
BspCNI	CTCAG	1 cut(s)	464
BspFNI	CGCG	3 cut(s)	270, 372, 492
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	2 cut(s)	323, 389
BspT104I	TTCGAA	1 cut(s)	321
BspTI	CTTAAG	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	5 cut(s)	336, 370, 399, 400, 475
BssMI	GATC	4 cut(s)	216, 234, 273, 345
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	401
Bst6I	CTCTTC	2 cut(s)	323, 389
BstAFI	CTTAAG	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	380, 407
BstDEI	CTNAG	1 cut(s)	451
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	1 cut(s)	7
BstFNI	CGCG	3 cut(s)	270, 372, 492
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	4 cut(s)	219, 237, 276, 348
BstMBI	GATC	4 cut(s)	216, 234, 273, 345
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 294, 338
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	39
BstUI	CGCG	3 cut(s)	270, 372, 492
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	3 cut(s)	234, 273, 345
BstYI	RGATCY	3 cut(s)	234, 273, 345
BsuRI	GGCC	3 cut(s)	128, 341, 405
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	7
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	380, 407
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	403
Cfr42I	CCGCGG	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	34, 364, 433
CspCI	CAANNNNNGTGG	1 cut(s)	476
CviAII	CATG	2 cut(s)	358, 470
CviQI	GTAC	3 cut(s)	34, 364, 433
DdeI	CTNAG	1 cut(s)	451
DpnI	GATC	4 cut(s)	218, 236, 275, 347
DpnII	GATC	4 cut(s)	216, 234, 273, 345
Eam1104I	CTCTTC	2 cut(s)	323, 389
EarI	CTCTTC	2 cut(s)	323, 389
EciI	GGCGGA	2 cut(s)	275, 284
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	382
Eco88I	CYCGRG	2 cut(s)	143, 474
EcoICRI	GAGCTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	361, 473
FaiI	YATR	5 cut(s)	110, 153, 254, 359, 471
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	2 cut(s)	357, 469
FblI	GTMKAC	2 cut(s)	42, 483
Fnu4HI	GCNGC	4 cut(s)	149, 161, 373, 376
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	4 cut(s)	149, 161, 373, 376
FspBI	CTAG	2 cut(s)	182, 426
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	4 cut(s)	149, 161, 373, 376
HaeIII	GGCC	3 cut(s)	128, 341, 405
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	361, 473
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	4 cut(s)	4, 74, 462, 480
Hpy166II	GTNNAC	2 cut(s)	43, 484
Hpy188I	TCNGA	3 cut(s)	73, 201, 461
Hpy8I	GTNNAC	2 cut(s)	43, 484
HpyAV	CCTTC	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	2 cut(s)	68, 140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 294, 338
HpyF3I	CTNAG	1 cut(s)	451
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	361, 473
HspAI	GCGC	1 cut(s)	207
KspI	CCGCGG	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	216, 234, 273, 345
LguI	GCTCTTC	2 cut(s)	323, 389
LpnPI	CCDG	7 cut(s)	177, 217, 326, 386, 413, 419, 452
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	77, 197
MaeI	CTAG	2 cut(s)	182, 426
MaeII	ACGT	1 cut(s)	366
MalI	GATC	4 cut(s)	218, 236, 275, 347
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	4 cut(s)	216, 234, 273, 345
MboII	GAAGA	4 cut(s)	244, 274, 310, 376
MflI	RGATCY	3 cut(s)	234, 273, 345
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	5 cut(s)	16, 21, 111, 170, 443
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	1 cut(s)	224
MseI	TTAA	5 cut(s)	20, 57, 213, 411, 446
MspA1I	CMGCKG	1 cut(s)	372
MspCI	CTTAAG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	3 cut(s)	270, 372, 492
MwoI	GCNNNNNNNGC	3 cut(s)	157, 294, 338
NdeII	GATC	4 cut(s)	216, 234, 273, 345
NlaIII	CATG	2 cut(s)	361, 473
NmeAIII	GCCGAG	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	321
PaeR7I	CTCGAG	1 cut(s)	143
PasI	CCCWGGG	1 cut(s)	400
PciSI	GCTCTTC	2 cut(s)	323, 389
PfeI	GAWTC	3 cut(s)	4, 74, 462
PkrI	GCNGC	4 cut(s)	150, 162, 374, 377
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PshBI	ATTAAT	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	403
PspXI	VCTCGAGB	1 cut(s)	143
PsuI	RGATCY	3 cut(s)	234, 273, 345
RsaI	GTAC	3 cut(s)	35, 365, 434
RsaNI	GTAC	3 cut(s)	34, 364, 433
SacI	GAGCTC	1 cut(s)	384
SacII	CCGCGG	1 cut(s)	373
SapI	GCTCTTC	2 cut(s)	323, 389
SaqAI	TTAA	5 cut(s)	20, 57, 213, 411, 446
SatI	GCNGC	4 cut(s)	149, 161, 373, 376
Sau3AI	GATC	4 cut(s)	216, 234, 273, 345
Sau96I	GGNCC	1 cut(s)	403
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	77, 197
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	143
Sfr303I	CCGCGG	1 cut(s)	373
SfuI	TTCGAA	1 cut(s)	321
SgrBI	CCGCGG	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	3 cut(s)	56, 143, 239
SmoI	CTYRAG	3 cut(s)	56, 143, 239
Sse9I	AATT	5 cut(s)	16, 21, 111, 170, 443
SsiI	CCGC	8 cut(s)	148, 246, 286, 295, 370, 372, 375, 490
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	2 cut(s)	182, 426
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	336
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	3 cut(s)	144, 222, 321
TasI	AATT	5 cut(s)	16, 21, 111, 170, 443
TatI	WGTACW	2 cut(s)	33, 432
TauI	GCSGC	3 cut(s)	151, 375, 378
TfiI	GAWTC	3 cut(s)	4, 74, 462
Tru1I	TTAA	5 cut(s)	20, 57, 213, 411, 446
Tru9I	TTAA	5 cut(s)	20, 57, 213, 411, 446
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	17, 241
Vha464I	CTTAAG	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	446
XhoI	CTCGAG	1 cut(s)	143
XmiI	GTMKAC	2 cut(s)	42, 483
XspI	CTAG	2 cut(s)	182, 426
ZrmI	AGTACT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.