Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

4074773 .. 4076788

Gene Structure 2016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCAGGTTGGATCCCTCGAAAGAAATACGACCCTGGCTCCCTCGAAATGGCAGGTTGGATCCTCCCAGTTGGCTCTGCCACCGACCTAAACTCCACACTTCGTGTCCAACCCCTTCATGAGCCGACACCCAGCCCACCCCGTCCCCAGCACCAGAACCCTCGGCTTCTCGCCGGCCTTAGTAGGCCCCTAGCCGGAGCACAACGCCGGCGGTCGGGCCTCGGTGAAGTGGAAGAGCCAGGTTTGTTGAATGCTGATGGGGTGTGTGATGACTGTGACGGCGAGAACCAAGAGATTATTACACCCACCACTTTGACTGCTTTCGATTTCATATCTCTTGCAAGTGGATTTGATTTGTCTGGTTTGATGACGCAAAAGGATTCAAAGAAAGTAGTGCAGTTCACATCCGCGCAATCTGCCACATCCATCATGTCGAAGCTGAGGGAGATTACTCGGAAACTGAAGCTGAAAGTGAAGAAAGAAGGAGCATCACTGAAGTTGGTGAAATCCATGGATGGAAGGGCATTATCCATAGAAGCCGAAATTTTTGATTTCACTCCATCCTTTCATCTAGTGGAGATGAAGAAATCTAACGGAGATACATTCGAGTTTAGGAAGATGGTAGAAGAGGATATGAGGCCGGCTCTCAAAGACGTCGTATGGGCATGGCAGGGAAAGAAGAAAGCTCATGAGTCATTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

235

Amino Acids

25.93

Weight (kDa)

9.02

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAF	PF03822	102 - 160	1.1e-17	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	657
Acc36I	ACCTGC	1 cut(s)	44
AccII	CGCG	1 cut(s)	410
AciI	CCGC	2 cut(s)	211, 408
AclWI	GGATC	4 cut(s)	7, 20, 55, 68
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	2 cut(s)	482, 515
AcyI	GRCGYC	1 cut(s)	654
AdeI	CACNNNGTG	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	49, 194, 214
AgsI	TTSAA	2 cut(s)	250, 384
AjnI	CCWGG	2 cut(s)	34, 238
AluBI	AGCT	3 cut(s)	439, 466, 686
AluI	AGCT	3 cut(s)	439, 466, 686
Alw21I	GWGCWC	1 cut(s)	202
AlwI	GGATC	4 cut(s)	7, 20, 55, 68
AoxI	GGCC	4 cut(s)	175, 185, 217, 638
ApoI	RAATTY	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	186, 217
AsuHPI	GGTGA	2 cut(s)	236, 514
BamHI	GGATCC	2 cut(s)	12, 60
Bbv12I	GWGCWC	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	440
BccI	CCATC	5 cut(s)	251, 434, 509, 568, 613
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	2 cut(s)	36, 240
BfaI	CTAG	2 cut(s)	191, 572
BfuAI	ACCTGC	1 cut(s)	44
Bme1390I	CCNGG	2 cut(s)	36, 240
BmgT120I	GGNCC	2 cut(s)	186, 217
BmiI	GGNNCC	4 cut(s)	14, 40, 62, 188
BmrFI	CCNGG	2 cut(s)	36, 240
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	497
BmuI	ACTGGG	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
Bpu10I	CCTNAGC	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	654
BsaJI	CCNNGG	4 cut(s)	34, 161, 220, 510
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 77, 107
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 194, 214
Bse118I	RCCGGY	3 cut(s)	173, 207, 640
Bse1I	ACTGG	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	36, 240
BseDI	CCNNGG	4 cut(s)	34, 161, 220, 510
BseGI	GGATG	4 cut(s)	404, 422, 520, 560
BseLI	CCNNNNNNNGG	3 cut(s)	49, 194, 214
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	68
BseYI	CCCAGC	2 cut(s)	131, 147
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	410
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	4 cut(s)	177, 187, 219, 640
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	4 cut(s)	174, 195, 208, 641
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	3 cut(s)	49, 194, 214
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	4 cut(s)	177, 187, 219, 640
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	12, 60
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	2 cut(s)	211, 408
BspANI	GGCC	4 cut(s)	177, 187, 219, 640
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	410
BspHI	TCATGA	2 cut(s)	118, 688
BspLI	GGNNCC	4 cut(s)	14, 40, 62, 188
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	4 cut(s)	7, 20, 55, 68
BspQI	GCTCTTC	1 cut(s)	228
BsrFI	RCCGGY	3 cut(s)	173, 207, 640
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	3 cut(s)	173, 207, 640
BssECI	CCNNGG	4 cut(s)	34, 161, 220, 510
BssMI	GATC	2 cut(s)	12, 60
BssNI	GRCGYC	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	36, 240
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	2 cut(s)	228, 621
BstACI	GRCGYC	1 cut(s)	654
BstC8I	GCNNGC	3 cut(s)	175, 209, 642
BstDEI	CTNAG	2 cut(s)	179, 440
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	404, 422, 520, 560
BstFNI	CGCG	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	2 cut(s)	15, 63
BstMBI	GATC	2 cut(s)	12, 60
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	36, 240
BstSCI	CCNGG	2 cut(s)	34, 238
BstUI	CGCG	1 cut(s)	410
BstX2I	RGATCY	2 cut(s)	12, 60
BstYI	RGATCY	2 cut(s)	12, 60
BsuRI	GGCC	4 cut(s)	177, 187, 219, 640
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	4 cut(s)	404, 422, 520, 560
BtsIMutI	CAGTG	1 cut(s)	491
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	3 cut(s)	175, 209, 642
CciI	TCATGA	2 cut(s)	118, 688
CfoI	GCGC	1 cut(s)	412
Cfr10I	RCCGGY	3 cut(s)	173, 207, 640
Cfr13I	GGNCC	2 cut(s)	186, 217
CseI	GACGC	1 cut(s)	379
CviAII	CATG	5 cut(s)	119, 430, 511, 666, 689
DdeI	CTNAG	2 cut(s)	179, 440
DpnI	GATC	2 cut(s)	14, 62
DpnII	GATC	2 cut(s)	12, 60
DraIII	CACNNNGTG	1 cut(s)	104
Eam1104I	CTCTTC	2 cut(s)	228, 621
EarI	CTCTTC	2 cut(s)	228, 621
Eco130I	CCWWGG	1 cut(s)	510
Eco57I	CTGAAG	2 cut(s)	482, 515
EcoO109I	RGGNCCY	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	34, 238
EcoT14I	CCWWGG	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	5 cut(s)	122, 433, 514, 669, 692
FaiI	YATR	9 cut(s)	120, 332, 431, 512, 533, 635, 661, 667, 690
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	5 cut(s)	118, 429, 510, 665, 688
FokI	GGATG	4 cut(s)	391, 409, 527, 547
FspBI	CTAG	2 cut(s)	191, 572
GlaI	GCGC	1 cut(s)	411
GsaI	CCCAGC	2 cut(s)	135, 151
HaeIII	GGCC	4 cut(s)	177, 187, 219, 640
HapII	CCGG	4 cut(s)	174, 195, 208, 641
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	654
Hin1II	CATG	5 cut(s)	122, 433, 514, 669, 692
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HinfI	GANTC	2 cut(s)	380, 692
HpaII	CCGG	4 cut(s)	174, 195, 208, 641
HphI	GGTGA	2 cut(s)	236, 514
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	2 cut(s)	119, 689
Hpy8I	GTNNAC	1 cut(s)	402
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	3 cut(s)	125, 476, 513
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	2 cut(s)	341, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	2 cut(s)	179, 440
HpySE526I	ACGT	1 cut(s)	654
Hsp92I	GRCGYC	1 cut(s)	654
Hsp92II	CATG	5 cut(s)	122, 433, 514, 669, 692
HspAI	GCGC	1 cut(s)	410
KroI	GCCGGC	3 cut(s)	173, 207, 640
KroNI	GCCGGC	3 cut(s)	175, 209, 642
Kzo9I	GATC	2 cut(s)	12, 60
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	3 cut(s)	44, 197, 485
LweI	GCATC	1 cut(s)	497
MaeI	CTAG	2 cut(s)	191, 572
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	14, 62
MboI	GATC	2 cut(s)	12, 60
MboII	GAAGA	6 cut(s)	245, 487, 595, 628, 638, 691
MflI	RGATCY	2 cut(s)	12, 60
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	2 cut(s)	38, 133
MnlI	CCTC	9 cut(s)	27, 53, 74, 171, 230, 435, 622, 630, 693
MreI	CGCCGGCG	1 cut(s)	207
MroNI	GCCGGC	3 cut(s)	173, 207, 640
MslI	CAYNNNNRTG	1 cut(s)	700
MspI	CCGG	4 cut(s)	174, 195, 208, 641
MspR9I	CCNGG	2 cut(s)	36, 240
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	36, 240
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	416
NaeI	GCCGGC	3 cut(s)	175, 209, 642
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	12, 60
NgoMIV	GCCGGC	3 cut(s)	173, 207, 640
NlaIII	CATG	5 cut(s)	122, 433, 514, 669, 692
NlaIV	GGNNCC	4 cut(s)	14, 40, 62, 188
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	275
PagI	TCATGA	2 cut(s)	118, 688
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	1 cut(s)	256
PdiI	GCCGGC	3 cut(s)	175, 209, 642
PfeI	GAWTC	1 cut(s)	380
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
Psp6I	CCWGG	2 cut(s)	34, 238
PspFI	CCCAGC	2 cut(s)	131, 147
PspGI	CCWGG	2 cut(s)	34, 238
PspN4I	GGNNCC	4 cut(s)	14, 40, 62, 188
PspPI	GGNCC	2 cut(s)	186, 217
PsuI	RGATCY	2 cut(s)	12, 60
RseI	CAYNNNNRTG	1 cut(s)	700
SapI	GCTCTTC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	12, 60
Sau96I	GGNCC	2 cut(s)	186, 217
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	2 cut(s)	36, 240
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	9 cut(s)	10, 58, 90, 244, 441, 468, 657, 688, 704
SfaNI	GCATC	1 cut(s)	497
SgrAI	CRCCGGYG	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	700
Sse9I	AATT	1 cut(s)	543
SsiI	CCGC	2 cut(s)	211, 408
SspMI	CTAG	2 cut(s)	191, 572
StyD4I	CCNGG	2 cut(s)	34, 238
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	5 cut(s)	19, 45, 324, 434, 606
TasI	AATT	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	380
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	4 cut(s)	107, 319, 557, 596
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	1 cut(s)	498
XapI	RAATTY	1 cut(s)	543
XspI	CTAG	2 cut(s)	191, 572
ZraI	GACGTC	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.