Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

61272866 .. 61273874

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAGAGGAAGGGAAAAGTGTTGATTCAGAAGTACGAAGTTGATAAATTTTTAGTAATCGCCAGAGACAAGGTTGTAAAACATGGATTGGTTAATCAAACCAAAAGAGAGATAACTATCATGAGAATGCTTAAACACCCAAACATAGTGCAGCTACATGATGTCCTAGCCTCCAGAGACAAGATCTACCTTGTCATGGAATACGCGGAAGGCGGTGAGCTTTTTCACAAAATATTAAAAGGAAAGCTGGAGGAGGAAGTAGCCAGGAACGACTTCCAAGAGTTGATCACCACAGTTGACTTCTGCCACAGGAGAGGTGTTTACCACCACGATTTGAAGCCCGAAAACTTGCTGCTAGATGAAAATGGAGTGTTGAAGGTATCGGATTTTGGGTTAAGTGCGCTTGCTGAATCGAAGAGGGAAGATGGTTTACTACATACAAGTTGTGGCACACCTTCTTATGTAGCTCCTGAAGTGTTGGGCAGGAAAGCCTATGATGGAGCCAAAGCCGATATATGGTCTTGTGGAAAAATATGCGCAGCAAATTATAAATGCCCGAGGTGGTTTCCAGATGAAGTGAGGAGCCTCCTGTCTGGGATCCTCAACCCTGATCCAGATAAAAGGATTCTTATTTCAGAGATAATGGAAACTTGCTGGTTTAGAAAAGGCTCCAAATCCGTTACGACCATACCAGAAGTGGAAGACCCGGGTTTCTTGCTAGACCAACCCTCTTTGAACGCTTTTGATATCATATCTCTTTCAAGTGGATTAGATTTGTCTGGTTTGTTCAATATATGCCTGGTTCGACTTGTCAGCGTGTGTTCTTCGAAACTCCCAGCTACACTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

283

Amino Acids

31.81

Weight (kDa)

6.71

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	24 - 180	5.4e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	32 - 177	4.1e-23	Protein tyrosine and serine/threonine kinase
NAF	PF03822	244 - 275	5.2e-10	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc16I	TGCGCA	1 cut(s)	538
AccII	CGCG	1 cut(s)	206
AciI	CCGC	2 cut(s)	206, 213
AclWI	GGATC	3 cut(s)	592, 605, 605
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	196, 516
AgsI	TTSAA	5 cut(s)	337, 376, 736, 762, 790
AjnI	CCWGG	2 cut(s)	263, 798
AluBI	AGCT	5 cut(s)	154, 220, 247, 467, 839
AluI	AGCT	5 cut(s)	154, 220, 247, 467, 839
Alw26I	GTCTC	2 cut(s)	60, 171
AlwI	GGATC	3 cut(s)	592, 605, 605
Ama87I	CYCGRG	2 cut(s)	556, 706
ApeKI	GCWGC	3 cut(s)	151, 352, 539
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	403, 539
AsuC2I	CCSGG	2 cut(s)	707, 708
AsuHPI	GGTGA	2 cut(s)	227, 280
AsuII	TTCGAA	1 cut(s)	827
AvaI	CYCGRG	2 cut(s)	556, 706
BamHI	GGATCC	1 cut(s)	597
BarI	GAAGNNNNNNTAC	2 cut(s)	414, 446
BbsI	GAAGAC	1 cut(s)	708
BbvI	GCAGC	3 cut(s)	163, 339, 551
BccI	CCATC	2 cut(s)	419, 491
BciT130I	CCWGG	2 cut(s)	265, 800
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	2 cut(s)	707, 708
BcoDI	GTCTC	2 cut(s)	60, 171
BfaI	CTAG	3 cut(s)	167, 356, 719
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	3 cut(s)	152, 353, 540
BlsI	GCNGC	3 cut(s)	153, 354, 541
Bme1390I	CCNGG	4 cut(s)	265, 707, 708, 800
BmeT110I	CYCGRG	2 cut(s)	556, 706
BmiI	GGNNCC	4 cut(s)	502, 584, 599, 670
BmrFI	CCNGG	4 cut(s)	265, 707, 708, 800
BpiI	GAAGAC	1 cut(s)	708
BpmI	CTGGAG	2 cut(s)	157, 269
Bpu14I	TTCGAA	1 cut(s)	827
BpuMI	CCSGG	2 cut(s)	707, 708
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	557, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 516
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	265, 800
BseDI	CCNNGG	2 cut(s)	557, 706
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	196, 516
BseRI	GAGGAG	2 cut(s)	266, 595
BseXI	GCAGC	3 cut(s)	163, 339, 551
BseYI	CCCAGC	1 cut(s)	835
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	206
BsiHKCI	CYCGRG	2 cut(s)	556, 706
BsiSI	CCGG	1 cut(s)	707
BslI	CCNNNNNNNGG	2 cut(s)	196, 516
BsmAI	GTCTC	2 cut(s)	60, 171
BsmI	GAATGC	1 cut(s)	132
BsoBI	CYCGRG	2 cut(s)	556, 706
Bsp119I	TTCGAA	1 cut(s)	827
Bsp143I	GATC	4 cut(s)	183, 285, 597, 610
BspACI	CCGC	2 cut(s)	206, 213
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	2 cut(s)	120, 848
BspLI	GGNNCC	4 cut(s)	502, 584, 599, 670
BspPI	GGATC	3 cut(s)	592, 605, 605
BspT104I	TTCGAA	1 cut(s)	827
BssECI	CCNNGG	2 cut(s)	557, 706
BssMI	GATC	4 cut(s)	183, 285, 597, 610
Bst2UI	CCWGG	2 cut(s)	265, 800
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	827
BstC8I	GCNNGC	1 cut(s)	405
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	403, 539
BstKTI	GATC	4 cut(s)	186, 288, 600, 613
BstMAI	GTCTC	2 cut(s)	60, 171
BstMBI	GATC	4 cut(s)	183, 285, 597, 610
BstNI	CCWGG	2 cut(s)	265, 800
BstSCI	CCNGG	4 cut(s)	263, 705, 706, 798
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	3 cut(s)	163, 339, 551
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	2 cut(s)	183, 597
BstYI	RGATCY	2 cut(s)	183, 597
Cac8I	GCNNGC	1 cut(s)	405
CciI	TCATGA	2 cut(s)	120, 848
CfoI	GCGC	2 cut(s)	403, 539
Cfr9I	CCCGGG	1 cut(s)	706
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	5 cut(s)	83, 121, 158, 196, 849
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	4 cut(s)	185, 287, 599, 612
DpnII	GATC	4 cut(s)	183, 285, 597, 610
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco32I	GATATC	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	556, 706
EcoRII	CCWGG	2 cut(s)	263, 798
EcoRV	GATATC	1 cut(s)	748
FaeI	CATG	5 cut(s)	86, 124, 161, 199, 852
FatI	CATG	5 cut(s)	82, 120, 157, 195, 848
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	152, 353, 540
Fsp4HI	GCNGC	3 cut(s)	152, 353, 540
FspBI	CTAG	3 cut(s)	167, 356, 719
FspI	TGCGCA	1 cut(s)	538
GlaI	GCGC	2 cut(s)	402, 538
GluI	GCNGC	3 cut(s)	152, 353, 540
GsaI	CCCAGC	1 cut(s)	839
GsuI	CTGGAG	2 cut(s)	157, 269
HapII	CCGG	1 cut(s)	707
HhaI	GCGC	2 cut(s)	403, 539
Hin1II	CATG	5 cut(s)	86, 124, 161, 199, 852
Hin6I	GCGC	2 cut(s)	401, 537
HinP1I	GCGC	2 cut(s)	401, 537
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	3 cut(s)	25, 410, 625
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	2 cut(s)	227, 280
Hpy166II	GTNNAC	3 cut(s)	298, 322, 431
Hpy188I	TCNGA	3 cut(s)	30, 385, 637
Hpy188III	TCNNGA	6 cut(s)	121, 174, 470, 569, 614, 849
Hpy8I	GTNNAC	3 cut(s)	298, 322, 431
HpyAV	CCTTC	4 cut(s)	4, 203, 370, 465
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	151
Hsp92II	CATG	5 cut(s)	86, 124, 161, 199, 852
HspAI	GCGC	2 cut(s)	401, 537
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	183, 285, 597, 610
LmnI	GCTCC	4 cut(s)	472, 500, 582, 674
Lsp1109I	GCAGC	3 cut(s)	163, 339, 551
MaeI	CTAG	3 cut(s)	167, 356, 719
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	4 cut(s)	185, 287, 599, 612
MboI	GATC	4 cut(s)	183, 285, 597, 610
MboII	GAAGA	4 cut(s)	427, 434, 713, 816
MflI	RGATCY	2 cut(s)	183, 597
MluCI	AATT	2 cut(s)	47, 544
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	4 cut(s)	93, 132, 236, 395
MslI	CAYNNNNRTG	2 cut(s)	125, 847
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	4 cut(s)	265, 707, 708, 800
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	2 cut(s)	265, 800
MvnI	CGCG	1 cut(s)	206
NciI	CCSGG	2 cut(s)	707, 708
NdeII	GATC	4 cut(s)	183, 285, 597, 610
NlaIII	CATG	5 cut(s)	86, 124, 161, 199, 852
NlaIV	GGNNCC	4 cut(s)	502, 584, 599, 670
NsbI	TGCGCA	1 cut(s)	538
NspV	TTCGAA	1 cut(s)	827
PagI	TCATGA	2 cut(s)	120, 848
PctI	GAATGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	25, 410, 625
PkrI	GCNGC	3 cut(s)	153, 354, 541
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	263, 798
PspFI	CCCAGC	1 cut(s)	835
PspGI	CCWGG	2 cut(s)	263, 798
PspN4I	GGNNCC	4 cut(s)	502, 584, 599, 670
PsuI	RGATCY	2 cut(s)	183, 597
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	125, 847
SaqAI	TTAA	4 cut(s)	93, 132, 236, 395
SatI	GCNGC	3 cut(s)	152, 353, 540
Sau3AI	GATC	4 cut(s)	183, 285, 597, 610
ScrFI	CCNGG	4 cut(s)	265, 707, 708, 800
SfuI	TTCGAA	1 cut(s)	827
SmaI	CCCGGG	1 cut(s)	708
SmiMI	CAYNNNNRTG	2 cut(s)	125, 847
Sse9I	AATT	2 cut(s)	47, 544
SsiI	CCGC	2 cut(s)	206, 213
SspI	AATATT	1 cut(s)	234
SspMI	CTAG	3 cut(s)	167, 356, 719
StyD4I	CCNGG	4 cut(s)	263, 705, 706, 798
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	413, 805, 827
TasI	AATT	2 cut(s)	47, 544
TfiI	GAWTC	3 cut(s)	25, 410, 625
Tru1I	TTAA	4 cut(s)	93, 132, 236, 395
Tru9I	TTAA	4 cut(s)	93, 132, 236, 395
TseI	GCWGC	3 cut(s)	151, 352, 539
TspDTI	ATGAA	3 cut(s)	375, 588, 837
TspGWI	ACGGA	1 cut(s)	667
TspMI	CCCGGG	1 cut(s)	706
XapI	RAATTY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XmaI	CCCGGG	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	3 cut(s)	167, 356, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.